Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0001089

Physical Location & Seq

Genomic Coordinates Forward (+)

22034256 .. 22035017

Gene Structure 762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1151300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCTTCGTCGTTTTTGATGGAGATTCAAATACCAAGGCATGCAAAAAGTGAGGGCTCAGCCATGGTTCACTTACTTCCCGTTTCACACAACCCTTATTCAAAATCCCATATTGCGACAAGGTCTACCAATGTCTCCACTACACCAACCATTGCCAAATTCACCTTCCTTATTTTTCTTTCCTTGGTCACTCTTGCCATTATCGTATTTCTACCGTTCATACGCAAGGAGCTCACTCGAGGCCCCCAAGCCCCCATTGTCCAACTTACCGCCTTATCTGTGCACAAATTCAACGTCTCCGACAAAAACCTAACTGCCGAATGGGACGTCAAACTGAAAATTGCTAACCCTAATCTTGTCTCTTACATTTGGTTCAACCGGCTCGAAGGTTTTGTTCTGTATGAGGACAGACCGCTTGTCGTCAAGCCAGAGAAGCCATTCGGTCTGCCCATGAAGACAAAAACCGAACTGCATCTCAGGCTTAGAATGGCGAATTGGGAAGGGGATCAACCAGCGCTTAAGCAACTGTTGTTGGAGAAGATGAAGAAAGATAGAGAATTGGGGGGTGTGAGATTTAGTGTTCAAATGGCCATCTGGGCGACGTATAGGAGTGGTTGGTGGTGGTCGGCGCAACATGTGATTATGAATCTTCAATGTTTAGATTTGCAGATTGGGTTTAAGCCAGGCGCCACGGCTATAGGTTTTGGGATTTTGATGGGTGACGTACCCAGGACGTGCTATGTTCCCATGCTAGCTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

254

Amino Acids

28.7

Weight (kDa)

9.69

Isoelectric Point (pI)

31.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52460
fragaria_vesca	FvH4_3g40821 FvH4_5g22901 FvH4_6g24970
malus_domestica	MD07G1151300.v1.1 MD12G1039100.v1.1 MD12G1087900.v1.1 MD14G1037800.v1.1 MD14G1037900.v1.1
prunus_persica	Prupe.7G048100_v2.0.a1 Prupe.7G096300_v2.0.a1 Prupe.7G096500_v2.0.a1 Prupe.7G096700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0124701 RchiOBHm_Chr3g0475771 RchiOBHm_Chr5g0073621 RchiOBHm_Chr7g0211331 RchiOBHm_Chr7g0211341
rosa_laevigata	RLG00000003008 RLG00000003009 RLG00000018813 RLG00000023818 RLG00000036394
rosa_multiflora	Rmu_sc0000539.1_g000081 Rmu_sc0001226.1_g000003 Rmu_ssc0000242.1_g000009 Rmu_ssc0000242.1_g000017
rosa_roxburghii	Rroxscaffold_2G00119740 Rroxscaffold_3G00247920
rosa_rugosa	Rorug02G0251900 Rorug04G0403500.1 Rorug05G0424700 Rorug05G0425600 Rorug05G0425600 Rorug07G0125100 Rorug07G0125200 Rorug07G0170100
rosa_samantha	Rh2AG310900 Rh2CG298300 Rh2DG334900 Rh3AG201100 Rh3CG226100 Rh3DG226700 Rh5CG526300 Rh5CG526600 Rh5DG029800 Rh5DG515500 Rh5DG515600 Rh7AG257500 Rh7AG257600 Rh7BG251600 Rh7BG251700 Rh7DG264200 Rh7DG264300 Rh7DG309500
rosa_wichuraiana	Rw2G025150 Rw3G018290 Rw5G044820 Rw7G022010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	330
AccB1I	GGYRCC	1 cut(s)	686
AccI	GTMKAC	1 cut(s)	125
AciI	CCGC	2 cut(s)	270, 413
AclWI	GGATC	1 cut(s)	513
AcoI	YGGCCR	1 cut(s)	588
AcsI	RAATTY	2 cut(s)	158, 287
AcyI	GRCGYC	2 cut(s)	327, 687
AfaI	GTAC	1 cut(s)	726
AfeI	AGCGCT	1 cut(s)	516
AflII	CTTAAG	1 cut(s)	518
AflIII	ACRYGT	1 cut(s)	634
AgsI	TTSAA	6 cut(s)	29, 102, 292, 376, 584, 653
AhdI	GACNNNNNGTC	1 cut(s)	416
AjiI	CACGTC	1 cut(s)	735
AjnI	CCWGG	2 cut(s)	682, 728
AjuI	GAANNNNNNNTTGG	4 cut(s)	149, 181, 478, 510
AluBI	AGCT	2 cut(s)	232, 755
AluI	AGCT	2 cut(s)	232, 755
Alw21I	GWGCWC	2 cut(s)	234, 285
Alw26I	GTCTC	3 cut(s)	139, 301, 364
Alw44I	GTGCAC	1 cut(s)	281
AlwI	GGATC	1 cut(s)	513
Ama87I	CYCGRG	1 cut(s)	237
Aor51HI	AGCGCT	1 cut(s)	516
AoxI	GGCC	2 cut(s)	241, 588
ApaLI	GTGCAC	1 cut(s)	281
ApoI	RAATTY	2 cut(s)	158, 287
ArsI	GACNNNNNNTTYG	4 cut(s)	279, 311, 312, 344
Asp700I	GAANNNNTTC	1 cut(s)	437
AspLEI	GCGC	3 cut(s)	517, 631, 689
AspS9I	GGNCC	1 cut(s)	242
AsuHPI	GGTGA	2 cut(s)	154, 731
AsuNHI	GCTAGC	1 cut(s)	751
AvaI	CYCGRG	1 cut(s)	237
BaeGI	GKGCMC	1 cut(s)	285
BalI	TGGCCA	1 cut(s)	590
BanI	GGYRCC	1 cut(s)	686
BanII	GRGCYC	2 cut(s)	59, 234
BbsI	GAAGAC	1 cut(s)	461
Bbv12I	GWGCWC	2 cut(s)	234, 285
BccI	CCATC	3 cut(s)	13, 599, 709
BceAI	ACGGC	1 cut(s)	708
BciT130I	CCWGG	2 cut(s)	684, 730
BcoDI	GTCTC	3 cut(s)	139, 301, 364
BfaI	CTAG	1 cut(s)	752
BfmI	CTRYAG	1 cut(s)	696
BfoI	RGCGCY	2 cut(s)	518, 690
BfrI	CTTAAG	1 cut(s)	518
BglI	GCCNNNNNGGC	1 cut(s)	596
BlpI	GCTNAGC	1 cut(s)	58
Bme1390I	CCNGG	2 cut(s)	684, 730
BmeRI	GACNNNNNGTC	1 cut(s)	416
BmeT110I	CYCGRG	1 cut(s)	237
BmgBI	CACGTC	1 cut(s)	735
BmgT120I	GGNCC	1 cut(s)	242
BmiI	GGNNCC	2 cut(s)	244, 688
BmrFI	CCNGG	2 cut(s)	684, 730
BmsI	GCATC	1 cut(s)	481
BmtI	GCTAGC	1 cut(s)	755
BpiI	GAAGAC	1 cut(s)	461
Bpu1102I	GCTNAGC	1 cut(s)	58
BsaHI	GRCGYC	2 cut(s)	327, 687
BsaJI	CCNNGG	5 cut(s)	35, 63, 183, 690, 728
Bse118I	RCCGGY	1 cut(s)	378
Bse3DI	GCAATG	1 cut(s)	150
BseBI	CCWGG	2 cut(s)	684, 730
BseDI	CCNNGG	5 cut(s)	35, 63, 183, 690, 728
BseMI	GCAATG	1 cut(s)	150
BseMII	CTCAG	3 cut(s)	72, 490, 747
BseSI	GKGCMC	1 cut(s)	285
BshFI	GGCC	2 cut(s)	243, 590
BshNI	GGYRCC	1 cut(s)	686
BsiHKAI	GWGCWC	2 cut(s)	234, 285
BsiHKCI	CYCGRG	1 cut(s)	237
BsiSI	CCGG	1 cut(s)	379
BslFI	GGGAC	1 cut(s)	338
BsmAI	GTCTC	3 cut(s)	139, 301, 364
BsmBI	CGTCTC	1 cut(s)	301
BsmFI	GGGAC	1 cut(s)	338
BsnI	GGCC	2 cut(s)	243, 590
BsoBI	CYCGRG	1 cut(s)	237
Bsp1286I	GDGCHC	3 cut(s)	59, 234, 285
Bsp143I	GATC	1 cut(s)	505
Bsp1720I	GCTNAGC	1 cut(s)	58
Bsp19I	CCATGG	1 cut(s)	63
BspACI	CCGC	2 cut(s)	270, 413
BspANI	GGCC	2 cut(s)	243, 590
BspCNI	CTCAG	3 cut(s)	71, 489, 748
BspLI	GGNNCC	2 cut(s)	244, 688
BspOI	GCTAGC	1 cut(s)	755
BspPI	GGATC	1 cut(s)	513
BspT107I	GGYRCC	1 cut(s)	686
BspTI	CTTAAG	1 cut(s)	518
BsrDI	GCAATG	1 cut(s)	150
BsrFI	RCCGGY	1 cut(s)	378
BssAI	RCCGGY	1 cut(s)	378
BssECI	CCNNGG	5 cut(s)	35, 63, 183, 690, 728
BssMI	GATC	1 cut(s)	505
BssNI	GRCGYC	2 cut(s)	327, 687
BssT1I	CCWWGG	3 cut(s)	35, 63, 183
Bst2UI	CCWGG	2 cut(s)	684, 730
Bst4CI	ACNGT	2 cut(s)	216, 528
BstACI	GRCGYC	2 cut(s)	327, 687
BstAFI	CTTAAG	1 cut(s)	518
BstC8I	GCNNGC	2 cut(s)	42, 753
BstDEI	CTNAG	4 cut(s)	58, 476, 482, 756
BstDSI	CCRYGG	2 cut(s)	63, 690
BstH2I	RGCGCY	2 cut(s)	518, 690
BstHHI	GCGC	3 cut(s)	517, 631, 689
BstKTI	GATC	1 cut(s)	508
BstMAI	GTCTC	3 cut(s)	139, 301, 364
BstMBI	GATC	1 cut(s)	505
BstMWI	GCNNNNNNNGC	3 cut(s)	433, 478, 596
BstNI	CCWGG	2 cut(s)	684, 730
BstNSI	RCATGY	2 cut(s)	44, 638
BstSCI	CCNGG	2 cut(s)	682, 728
BstSFI	CTRYAG	1 cut(s)	696
BstSLI	GKGCMC	1 cut(s)	285
BstV2I	GAAGAC	1 cut(s)	461
BsuRI	GGCC	2 cut(s)	243, 590
BtgI	CCRYGG	2 cut(s)	63, 690
BtrI	CACGTC	1 cut(s)	735
Cac8I	GCNNGC	2 cut(s)	42, 753
CfoI	GCGC	3 cut(s)	517, 631, 689
Cfr10I	RCCGGY	1 cut(s)	378
Cfr13I	GGNCC	1 cut(s)	242
Csp6I	GTAC	1 cut(s)	725
CviAII	CATG	5 cut(s)	41, 64, 451, 635, 748
CviQI	GTAC	1 cut(s)	725
DdeI	CTNAG	4 cut(s)	58, 476, 482, 756
DinI	GGCGCC	1 cut(s)	688
DpnI	GATC	1 cut(s)	507
DpnII	GATC	1 cut(s)	505
DriI	GACNNNNNGTC	1 cut(s)	416
EaeI	YGGCCR	1 cut(s)	588
Eam1105I	GACNNNNNGTC	1 cut(s)	416
Ecl136II	GAGCTC	1 cut(s)	232
Eco130I	CCWWGG	3 cut(s)	35, 63, 183
Eco24I	GRGCYC	2 cut(s)	59, 234
Eco47III	AGCGCT	1 cut(s)	516
Eco53kI	GAGCTC	1 cut(s)	232
Eco88I	CYCGRG	1 cut(s)	237
EcoICRI	GAGCTC	1 cut(s)	232
EcoO109I	RGGNCCY	1 cut(s)	242
EcoRII	CCWGG	2 cut(s)	682, 728
EcoT14I	CCWWGG	3 cut(s)	35, 63, 183
EcoT38I	GRGCYC	2 cut(s)	59, 234
EgeI	GGCGCC	1 cut(s)	688
EheI	GGCGCC	1 cut(s)	688
ErhI	CCWWGG	3 cut(s)	35, 63, 183
Esp3I	CGTCTC	1 cut(s)	301
FaeI	CATG	5 cut(s)	44, 67, 454, 638, 751
FaqI	GGGAC	1 cut(s)	338
FatI	CATG	5 cut(s)	40, 63, 450, 634, 747
FblI	GTMKAC	1 cut(s)	125
FriOI	GRGCYC	2 cut(s)	59, 234
FspBI	CTAG	1 cut(s)	752
GlaI	GCGC	3 cut(s)	516, 630, 688
HaeII	RGCGCY	2 cut(s)	518, 690
HaeIII	GGCC	2 cut(s)	243, 590
HapII	CCGG	1 cut(s)	379
HhaI	GCGC	3 cut(s)	517, 631, 689
Hin1I	GRCGYC	2 cut(s)	327, 687
Hin1II	CATG	5 cut(s)	44, 67, 454, 638, 751
Hin6I	GCGC	3 cut(s)	515, 629, 687
HinP1I	GCGC	3 cut(s)	515, 629, 687
HinfI	GANTC	2 cut(s)	25, 646
HpaII	CCGG	1 cut(s)	379
HphI	GGTGA	2 cut(s)	154, 731
Hpy166II	GTNNAC	3 cut(s)	70, 126, 283
Hpy188I	TCNGA	1 cut(s)	301
Hpy8I	GTNNAC	3 cut(s)	70, 126, 283
Hpy99I	CGWCG	2 cut(s)	13, 604
HpyAV	CCTTC	3 cut(s)	175, 380, 494
HpyCH4III	ACNGT	2 cut(s)	216, 528
HpyCH4IV	ACGT	5 cut(s)	294, 327, 602, 723, 734
HpyCH4V	TGCA	4 cut(s)	44, 283, 472, 667
HpyF10VI	GCNNNNNNNGC	3 cut(s)	433, 478, 596
HpyF3I	CTNAG	4 cut(s)	58, 476, 482, 756
HpySE526I	ACGT	5 cut(s)	294, 327, 602, 723, 734
Hsp92I	GRCGYC	2 cut(s)	327, 687
Hsp92II	CATG	5 cut(s)	44, 67, 454, 638, 751
HspAI	GCGC	3 cut(s)	515, 629, 687
KasI	GGCGCC	1 cut(s)	686
Kzo9I	GATC	1 cut(s)	505
LmnI	GCTCC	1 cut(s)	229
LpnPI	CCDG	9 cut(s)	392, 441, 463, 525, 580, 669, 696, 715, 742
LweI	GCATC	1 cut(s)	481
MaeI	CTAG	1 cut(s)	752
MaeII	ACGT	5 cut(s)	294, 327, 602, 723, 734
MaeIII	GTNAC	2 cut(s)	187, 719
MalI	GATC	1 cut(s)	507
MboI	GATC	1 cut(s)	505
MboII	GAAGA	4 cut(s)	466, 550, 556, 641
MhlI	GDGCHC	3 cut(s)	59, 234, 285
MlsI	TGGCCA	1 cut(s)	590
MluCI	AATT	5 cut(s)	158, 287, 339, 493, 557
MluNI	TGGCCA	1 cut(s)	590
Mly113I	GGCGCC	1 cut(s)	687
MmeI	TCCRAC	3 cut(s)	286, 324, 513
MnlI	CCTC	3 cut(s)	46, 233, 397
Mox20I	TGGCCA	1 cut(s)	590
MroXI	GAANNNNTTC	1 cut(s)	437
MscI	TGGCCA	1 cut(s)	590
MseI	TTAA	2 cut(s)	519, 678
Msp20I	TGGCCA	1 cut(s)	590
MspCI	CTTAAG	1 cut(s)	518
MspI	CCGG	1 cut(s)	379
MspR9I	CCNGG	2 cut(s)	684, 730
MvaI	CCWGG	2 cut(s)	684, 730
MwoI	GCNNNNNNNGC	3 cut(s)	433, 478, 596
NarI	GGCGCC	1 cut(s)	687
NcoI	CCATGG	1 cut(s)	63
NdeII	GATC	1 cut(s)	505
NheI	GCTAGC	1 cut(s)	751
NlaIII	CATG	5 cut(s)	44, 67, 454, 638, 751
NlaIV	GGNNCC	2 cut(s)	244, 688
NmuCI	GTSAC	2 cut(s)	187, 719
NspI	RCATGY	2 cut(s)	44, 638
PaeI	GCATGC	1 cut(s)	44
PaeR7I	CTCGAG	1 cut(s)	237
PciI	ACATGT	1 cut(s)	634
PdmI	GAANNNNTTC	1 cut(s)	437
PfeI	GAWTC	2 cut(s)	25, 646
PflFI	GACNNNGTC	1 cut(s)	121
PluTI	GGCGCC	1 cut(s)	690
PscI	ACATGT	1 cut(s)	634
Psp124BI	GAGCTC	1 cut(s)	234
Psp6I	CCWGG	2 cut(s)	682, 728
PspGI	CCWGG	2 cut(s)	682, 728
PspN4I	GGNNCC	2 cut(s)	244, 688
PspPI	GGNCC	1 cut(s)	242
PspXI	VCTCGAGB	1 cut(s)	237
PsyI	GACNNNGTC	1 cut(s)	121
RsaI	GTAC	1 cut(s)	726
RsaNI	GTAC	1 cut(s)	725
SacI	GAGCTC	1 cut(s)	234
SaqAI	TTAA	2 cut(s)	519, 678
Sau3AI	GATC	1 cut(s)	505
Sau96I	GGNCC	1 cut(s)	242
ScrFI	CCNGG	2 cut(s)	684, 730
SduI	GDGCHC	3 cut(s)	59, 234, 285
SfaNI	GCATC	1 cut(s)	481
SfcI	CTRYAG	1 cut(s)	696
SfoI	GGCGCC	1 cut(s)	688
Sfr274I	CTCGAG	1 cut(s)	237
SlaI	CTCGAG	1 cut(s)	237
SmlI	CTYRAG	2 cut(s)	237, 518
SmoI	CTYRAG	2 cut(s)	237, 518
SphI	GCATGC	1 cut(s)	44
Sse9I	AATT	5 cut(s)	158, 287, 339, 493, 557
SsiI	CCGC	2 cut(s)	270, 413
SspDI	GGCGCC	1 cut(s)	686
SspMI	CTAG	1 cut(s)	752
SstI	GAGCTC	1 cut(s)	234
StyD4I	CCNGG	2 cut(s)	682, 728
StyI	CCWWGG	3 cut(s)	35, 63, 183
TaaI	ACNGT	2 cut(s)	216, 528
TaiI	ACGT	5 cut(s)	297, 330, 605, 726, 737
TaqI	TCGA	2 cut(s)	238, 384
TaqII	GACCGA	1 cut(s)	431
TasI	AATT	5 cut(s)	158, 287, 339, 493, 557
TfiI	GAWTC	2 cut(s)	25, 646
Tru1I	TTAA	2 cut(s)	519, 678
Tru9I	TTAA	2 cut(s)	519, 678
TseFI	GTSAC	2 cut(s)	187, 719
Tsp45I	GTSAC	2 cut(s)	187, 719
TspDTI	ATGAA	4 cut(s)	208, 467, 557, 659
Tth111I	GACNNNGTC	1 cut(s)	121
Vha464I	CTTAAG	1 cut(s)	518
VneI	GTGCAC	1 cut(s)	281
XapI	RAATTY	2 cut(s)	158, 287
XceI	RCATGY	2 cut(s)	44, 638
XhoI	CTCGAG	1 cut(s)	237
XmiI	GTMKAC	1 cut(s)	125
XmnI	GAANNNNTTC	1 cut(s)	437
XspI	CTAG	1 cut(s)	752
ZraI	GACGTC	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.