FvH4_3g40821

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0001089
Physical Location & Seq
Forward (+)
34390093 .. 34390983
891 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g40821.t1

Sequence Viewer

Length: 705 bp
ATGGAAACTAATCTTAAAGCACTGGAATGCCCAGAGAACACACCACTACTTCCAGTTTCATGTAACCCTAAATCAAATTCTTCTGTTCCGTCTGTGAAATCACATTACATTTCCAGAGTCACCATCTTCCATCGCATAGTTCTAATGGTTAAATTCGGAACATTCTTGTCCTTGATTTATTATTTCACCTCCATGTCCTTGGTTCCCAAAGCTCCAAATTTCCAACTCGACTCTCTGTTTATTTCTAACTTTAACATCTCAAACACAACCGTCATGGCTGACTGGGATATGACCCTTAAAATAGAGAACCCTAACTTGGTCTCGACGGTTCACTTTAACAGCATAAGAGGATCGATTTCGTGCAAAGGCAACTCTCTTGCAATGTACTCAGAAGAGCCGTTTGAGTTGGGATACATGGAGCAGAGACTGCTGCATATGAAGTTATCAAAACACCGGACAGTGGCAACGAATGAATTGGTTTCCCATGAGATCAATAGTCAATTCAATGAGAATGGAGCTGTGAATTTTAGCCTGACAATGTTTGCTTCGGGTACATATACGACCGGTGGATGGAGAATCGAAAAGTTCATGTTGAACCCTCAGTGTTTGGATTTGAAGGTTGTCTTCCTTCCAAACACAAGGTTCGGAAGTTGGGTAAATGGAGGGCCAAAGAAATACTCACTTCCTATTTGCATTAACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

235

Amino Acids

26.41

Weight (kDa)

8.78

Isoelectric Point (pI)

34.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 358
AcsI RAATTY 4 cut(s) 76, 152, 217, 523
AfaI GTAC 2 cut(s) 386, 553
AfiI CCNNNNNNNGG 3 cut(s) 316, 460, 570
AgeI ACCGGT 1 cut(s) 563
AgsI TTSAA 3 cut(s) 505, 595, 616
AjuI GAANNNNNNNTTGG 2 cut(s) 299, 331
AluBI AGCT 2 cut(s) 212, 518
AluI AGCT 2 cut(s) 212, 518
Alw26I GTCTC 2 cut(s) 325, 418
AlwI GGATC 1 cut(s) 358
AlwNI CAGNNNCTG 1 cut(s) 427
AoxI GGCC 1 cut(s) 665
ApeKI GCWGC 1 cut(s) 430
ApoI RAATTY 4 cut(s) 76, 152, 217, 523
AsiGI ACCGGT 1 cut(s) 563
AspS9I GGNCC 1 cut(s) 665
AsuHPI GGTGA 2 cut(s) 112, 178
BbsI GAAGAC 1 cut(s) 616
BbvI GCAGC 1 cut(s) 417
BccI CCATC 3 cut(s) 131, 138, 564
BceAI ACGGC 1 cut(s) 382
BciVI GTATCC 1 cut(s) 404
BcoDI GTCTC 2 cut(s) 325, 418
BfuI GTATCC 1 cut(s) 404
BisI GCNGC 1 cut(s) 431
BlsI GCNGC 1 cut(s) 432
BmgT120I GGNCC 1 cut(s) 665
BmiI GGNNCC 1 cut(s) 204
BmrI ACTGGG 1 cut(s) 292
BmuI ACTGGG 1 cut(s) 292
BpiI GAAGAC 1 cut(s) 616
Bsa29I ATCGAT 1 cut(s) 353
BsaI GGTCTC 1 cut(s) 325
BsaJI CCNNGG 1 cut(s) 198
BsaWI WCCGGW 2 cut(s) 453, 563
Bsc4I CCNNNNNNNGG 3 cut(s) 316, 460, 570
Bse118I RCCGGY 1 cut(s) 563
Bse1I ACTGG 3 cut(s) 27, 53, 287
Bse3DI GCAATG 1 cut(s) 387
BseCI ATCGAT 1 cut(s) 353
BseDI CCNNGG 1 cut(s) 198
BseGI GGATG 1 cut(s) 575
BseLI CCNNNNNNNGG 3 cut(s) 316, 460, 570
BseMI GCAATG 1 cut(s) 387
BseMII CTCAG 2 cut(s) 402, 614
BseNI ACTGG 3 cut(s) 27, 53, 287
BseXI GCAGC 1 cut(s) 417
Bsh1285I CGRYCG 1 cut(s) 564
BshFI GGCC 1 cut(s) 667
BshTI ACCGGT 1 cut(s) 563
BshVI ATCGAT 1 cut(s) 353
BsiEI CGRYCG 1 cut(s) 564
BsiSI CCGG 2 cut(s) 454, 564
BslI CCNNNNNNNGG 3 cut(s) 316, 460, 570
BsmAI GTCTC 2 cut(s) 325, 418
BsmI GAATGC 1 cut(s) 32
BsnI GGCC 1 cut(s) 667
Bso31I GGTCTC 1 cut(s) 325
Bsp143I GATC 2 cut(s) 350, 489
BspANI GGCC 1 cut(s) 667
BspCNI CTCAG 2 cut(s) 401, 613
BspDI ATCGAT 1 cut(s) 353
BspLI GGNNCC 1 cut(s) 204
BspPI GGATC 1 cut(s) 358
BspQI GCTCTTC 1 cut(s) 387
BspTNI GGTCTC 1 cut(s) 325
BsrDI GCAATG 1 cut(s) 387
BsrFI RCCGGY 1 cut(s) 563
BsrI ACTGG 3 cut(s) 27, 53, 287
BssAI RCCGGY 1 cut(s) 563
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 2 cut(s) 350, 489
BssT1I CCWWGG 1 cut(s) 198
Bst4CI ACNGT 3 cut(s) 271, 328, 460
Bst6I CTCTTC 1 cut(s) 387
BstAPI GCANNNNNTGC 1 cut(s) 427
BstDEI CTNAG 2 cut(s) 388, 600
BstF5I GGATG 1 cut(s) 575
BstKTI GATC 2 cut(s) 353, 492
BstMAI GTCTC 2 cut(s) 325, 418
BstMBI GATC 2 cut(s) 350, 489
BstMCI CGRYCG 1 cut(s) 564
BstMWI GCNNNNNNNGC 1 cut(s) 427
BstV1I GCAGC 1 cut(s) 417
BstV2I GAAGAC 1 cut(s) 616
BstXI CCANNNNNNTGG 1 cut(s) 199
Bsu15I ATCGAT 1 cut(s) 353
BsuI GTATCC 1 cut(s) 404
BsuRI GGCC 1 cut(s) 667
BsuTUI ATCGAT 1 cut(s) 353
BtgZI GCGATG 1 cut(s) 116
BtsCI GGATG 1 cut(s) 575
BtsIMutI CAGTG 3 cut(s) 20, 465, 608
CaiI CAGNNNCTG 1 cut(s) 427
Cfr10I RCCGGY 1 cut(s) 563
Cfr13I GGNCC 1 cut(s) 665
ClaI ATCGAT 1 cut(s) 353
Csp6I GTAC 2 cut(s) 385, 552
CspAI ACCGGT 1 cut(s) 563
CviAII CATG 6 cut(s) 60, 193, 274, 415, 485, 589
CviJI RGCY 6 cut(s) 212, 278, 397, 518, 531, 667
CviKI_1 RGCY 6 cut(s) 212, 278, 397, 518, 531, 667
CviQI GTAC 2 cut(s) 385, 552
DdeI CTNAG 2 cut(s) 388, 600
DpnI GATC 2 cut(s) 352, 491
DpnII GATC 2 cut(s) 350, 489
Eam1104I CTCTTC 1 cut(s) 387
EarI CTCTTC 1 cut(s) 387
Eco130I CCWWGG 1 cut(s) 198
Eco31I GGTCTC 1 cut(s) 325
EcoT14I CCWWGG 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 198
FaeI CATG 6 cut(s) 63, 196, 277, 418, 488, 592
FalI AAGNNNNNCTT 2 cut(s) 608, 640
FatI CATG 6 cut(s) 59, 192, 273, 414, 484, 588
FauNDI CATATG 1 cut(s) 435
Fnu4HI GCNGC 1 cut(s) 431
FokI GGATG 1 cut(s) 582
Fsp4HI GCNGC 1 cut(s) 431
GluI GCNGC 1 cut(s) 431
HaeIII GGCC 1 cut(s) 667
HapII CCGG 2 cut(s) 454, 564
Hin1II CATG 6 cut(s) 63, 196, 277, 418, 488, 592
HinfI GANTC 3 cut(s) 117, 230, 576
HpaII CCGG 2 cut(s) 454, 564
HphI GGTGA 2 cut(s) 112, 178
Hpy166II GTNNAC 1 cut(s) 331
Hpy188I TCNGA 3 cut(s) 158, 391, 647
Hpy188III TCNNGA 2 cut(s) 114, 322
Hpy8I GTNNAC 1 cut(s) 331
Hpy99I CGWCG 1 cut(s) 328
HpyAV CCTTC 2 cut(s) 610, 638
HpyCH4III ACNGT 3 cut(s) 271, 328, 460
HpyCH4V TGCA 4 cut(s) 363, 380, 433, 693
HpyF10VI GCNNNNNNNGC 1 cut(s) 427
HpyF3I CTNAG 2 cut(s) 388, 600
Hsp92II CATG 6 cut(s) 63, 196, 277, 418, 488, 592
Kzo9I GATC 2 cut(s) 350, 489
LguI GCTCTTC 1 cut(s) 387
LmnI GCTCC 3 cut(s) 217, 418, 515
LpnPI CCDG 8 cut(s) 8, 45, 66, 127, 268, 467, 545, 577
Lsp1109I GCAGC 1 cut(s) 417
MaeIII GTNAC 2 cut(s) 62, 118
MalI GATC 2 cut(s) 352, 491
MboI GATC 2 cut(s) 350, 489
MboII GAAGA 4 cut(s) 72, 118, 404, 616
MluCI AATT 7 cut(s) 76, 152, 217, 473, 500, 523, 700
MlyI GAGTC 2 cut(s) 126, 224
MmeI TCCRAC 1 cut(s) 247
MnlI CCTC 4 cut(s) 199, 341, 609, 656
MseI TTAA 7 cut(s) 15, 150, 252, 297, 336, 696, 703
MslI CAYNNNNRTG 2 cut(s) 25, 191
MspI CCGG 2 cut(s) 454, 564
Mva1269I GAATGC 1 cut(s) 32
MwoI GCNNNNNNNGC 1 cut(s) 427
NdeI CATATG 1 cut(s) 435
NdeII GATC 2 cut(s) 350, 489
NlaIII CATG 6 cut(s) 63, 196, 277, 418, 488, 592
NlaIV GGNNCC 1 cut(s) 204
NmuCI GTSAC 1 cut(s) 118
PciSI GCTCTTC 1 cut(s) 387
PctI GAATGC 1 cut(s) 32
PfeI GAWTC 1 cut(s) 576
PinAI ACCGGT 1 cut(s) 563
PkrI GCNGC 1 cut(s) 432
PleI GAGTC 2 cut(s) 125, 224
PpsI GAGTC 2 cut(s) 125, 224
PspN4I GGNNCC 1 cut(s) 204
PspPI GGNCC 1 cut(s) 665
PstNI CAGNNNCTG 1 cut(s) 427
RsaI GTAC 2 cut(s) 386, 553
RsaNI GTAC 2 cut(s) 385, 552
RseI CAYNNNNRTG 2 cut(s) 25, 191
SapI GCTCTTC 1 cut(s) 387
SaqAI TTAA 7 cut(s) 15, 150, 252, 297, 336, 696, 703
SatI GCNGC 1 cut(s) 431
Sau3AI GATC 2 cut(s) 350, 489
Sau96I GGNCC 1 cut(s) 665
SchI GAGTC 2 cut(s) 126, 224
SetI ASST 5 cut(s) 191, 214, 520, 621, 644
SmiMI CAYNNNNRTG 2 cut(s) 25, 191
Sse9I AATT 7 cut(s) 76, 152, 217, 473, 500, 523, 700
StyI CCWWGG 1 cut(s) 198
TaaI ACNGT 3 cut(s) 271, 328, 460
TaqI TCGA 4 cut(s) 228, 323, 353, 579
TasI AATT 7 cut(s) 76, 152, 217, 473, 500, 523, 700
TatI WGTACW 1 cut(s) 384
TfiI GAWTC 1 cut(s) 576
Tru1I TTAA 7 cut(s) 15, 150, 252, 297, 336, 696, 703
Tru9I TTAA 7 cut(s) 15, 150, 252, 297, 336, 696, 703
TscAI CASTG 3 cut(s) 27, 465, 608
TseFI GTSAC 1 cut(s) 118
TseI GCWGC 1 cut(s) 430
Tsp45I GTSAC 1 cut(s) 118
TspDTI ATGAA 4 cut(s) 48, 452, 486, 577
TspGWI ACGGA 1 cut(s) 78
TspRI CASTG 3 cut(s) 27, 465, 608
XapI RAATTY 4 cut(s) 76, 152, 217, 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.