Prupe.7G096300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0001089
Physical Location & Seq
Forward (+)
12818657 .. 12819340
684 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G096300.1

Sequence Viewer

Length: 684 bp
ATGGAAATTAATGCAAAAGCTGATCACCACTCAACCACAGAGCCATTGCTCCTAATTTCAAGCAACCCTTCAAACCCCATCGTGTCCCAGTCAATCGCATCCCAATCCATTGCAAGATTAGTGCAACTCCACCGCATTCTATTACTTGCATTAGGGACATTCACATTGTTATGCGTCTTCATGCTCACGCCCACACAAACCCCAAAAATCCAACTTGACTCGCTCTTCGTGTCCAAGCTTGACGTATCAAACACATCACTAGGTGCCAGTTGGGACGTGGCCTTCACCATAGACAACCCCAACATGGTCTCATGGGTTCACTTCGACCGGATAGAAGGTTCAATTTTATACAAAGACAGCCCTCTGGCGATATATTTTGTCAAGCCATTTGACTTGGGTTTGAAGGAACAAAGAATGATGCATGTGAAGATATCGATGACCAGATTACAGAATCAGCCGGCGATGAAGGTGTCAGATTTGGAAGAAATGAATAGGCAACGTGAAGATGGTGCTGTGGGTTTGAAGATGGAAATGTTCGCATGGGCTACTTATAAGAAGGGTTGGTGGGGAACACAAGATGTCATGATGGAGGCTCATTGTTTGGGTTTGAGGATTGGCTTCTTGCCTAAAGTTGGGTTCGGTAGCTGGATCAGTGGAGGGCCAATGACTTGCTCGACTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

228

Amino Acids

25.39

Weight (kDa)

7.01

Isoelectric Point (pI)

32.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 552
AccB1I GGYRCC 1 cut(s) 263
AciI CCGC 1 cut(s) 133
AclWI GGATC 1 cut(s) 656
AdeI CACNNNGTG 1 cut(s) 263
AfiI CCNNNNNNNGG 2 cut(s) 304, 632
AgsI TTSAA 5 cut(s) 60, 72, 342, 403, 523
AjiI CACGTC 1 cut(s) 277
AloI GAACNNNNNNTCC 2 cut(s) 322, 354
AluBI AGCT 3 cut(s) 20, 238, 645
AluI AGCT 3 cut(s) 20, 238, 645
Alw26I GTCTC 1 cut(s) 313
AlwI GGATC 1 cut(s) 656
AoxI GGCC 2 cut(s) 279, 659
ArsI GACNNNNNNTTYG 2 cut(s) 209, 241
AseI ATTAAT 1 cut(s) 9
AspS9I GGNCC 1 cut(s) 659
AsuHPI GGTGA 2 cut(s) 17, 277
BanI GGYRCC 1 cut(s) 263
BbsI GAAGAC 1 cut(s) 169
BccI CCATC 4 cut(s) 86, 500, 520, 580
BclI TGATCA 1 cut(s) 22
BcoDI GTCTC 1 cut(s) 313
BfaI CTAG 1 cut(s) 260
BmgBI CACGTC 1 cut(s) 277
BmgT120I GGNCC 1 cut(s) 659
BmiI GGNNCC 1 cut(s) 265
BmrI ACTGGG 1 cut(s) 82
BmsI GCATC 2 cut(s) 107, 408
BmuI ACTGGG 1 cut(s) 82
BpiI GAAGAC 1 cut(s) 169
Bsa29I ATCGAT 1 cut(s) 434
BsaI GGTCTC 1 cut(s) 313
BsaWI WCCGGW 1 cut(s) 327
Bsc4I CCNNNNNNNGG 2 cut(s) 304, 632
Bse118I RCCGGY 1 cut(s) 457
Bse1I ACTGG 2 cut(s) 88, 267
Bse3DI GCAATG 2 cut(s) 44, 108
BseCI ATCGAT 1 cut(s) 434
BseGI GGATG 1 cut(s) 98
BseLI CCNNNNNNNGG 2 cut(s) 304, 632
BseMI GCAATG 2 cut(s) 44, 108
BseNI ACTGG 2 cut(s) 88, 267
Bsh1285I CGRYCG 1 cut(s) 328
BshFI GGCC 2 cut(s) 281, 661
BshNI GGYRCC 1 cut(s) 263
BshVI ATCGAT 1 cut(s) 434
BsiEI CGRYCG 1 cut(s) 328
BsiSI CCGG 2 cut(s) 328, 458
BslFI GGGAC 3 cut(s) 70, 169, 287
BslI CCNNNNNNNGG 2 cut(s) 304, 632
BsmAI GTCTC 1 cut(s) 313
BsmFI GGGAC 3 cut(s) 70, 169, 287
BsmI GAATGC 1 cut(s) 135
BsnI GGCC 2 cut(s) 281, 661
Bso31I GGTCTC 1 cut(s) 313
Bsp143I GATC 2 cut(s) 22, 648
BspACI CCGC 1 cut(s) 133
BspANI GGCC 2 cut(s) 281, 661
BspDI ATCGAT 1 cut(s) 434
BspHI TCATGA 1 cut(s) 582
BspLI GGNNCC 1 cut(s) 265
BspPI GGATC 1 cut(s) 656
BspQI GCTCTTC 1 cut(s) 230
BspT107I GGYRCC 1 cut(s) 263
BspTNI GGTCTC 1 cut(s) 313
BsrDI GCAATG 2 cut(s) 44, 108
BsrFI RCCGGY 1 cut(s) 457
BsrI ACTGG 2 cut(s) 88, 267
BssAI RCCGGY 1 cut(s) 457
BssMI GATC 2 cut(s) 22, 648
Bst4CI ACNGT 1 cut(s) 679
Bst6I CTCTTC 1 cut(s) 230
BstC8I GCNNGC 1 cut(s) 459
BstF5I GGATG 1 cut(s) 98
BstKTI GATC 2 cut(s) 25, 651
BstMAI GTCTC 1 cut(s) 313
BstMBI GATC 2 cut(s) 22, 648
BstMCI CGRYCG 1 cut(s) 328
BstNSI RCATGY 1 cut(s) 425
BstV2I GAAGAC 1 cut(s) 169
Bsu15I ATCGAT 1 cut(s) 434
BsuRI GGCC 2 cut(s) 281, 661
BsuTUI ATCGAT 1 cut(s) 434
BtgZI GCGATG 1 cut(s) 476
BtrI CACGTC 1 cut(s) 277
BtsCI GGATG 1 cut(s) 98
BtsIMutI CAGTG 1 cut(s) 658
Cac8I GCNNGC 1 cut(s) 459
CciI TCATGA 1 cut(s) 582
Cfr10I RCCGGY 1 cut(s) 457
Cfr13I GGNCC 1 cut(s) 659
ClaI ATCGAT 1 cut(s) 434
CseI GACGC 1 cut(s) 163
CviAII CATG 6 cut(s) 181, 304, 312, 422, 540, 583
DpnI GATC 2 cut(s) 24, 650
DpnII GATC 2 cut(s) 22, 648
DraIII CACNNNGTG 1 cut(s) 263
Eam1104I CTCTTC 1 cut(s) 230
EarI CTCTTC 1 cut(s) 230
Eco31I GGTCTC 1 cut(s) 313
Eco32I GATATC 1 cut(s) 432
EcoRV GATATC 1 cut(s) 432
EcoT22I ATGCAT 1 cut(s) 423
FaeI CATG 6 cut(s) 184, 307, 315, 425, 543, 586
FalI AAGNNNNNCTT 2 cut(s) 52, 84
FaqI GGGAC 3 cut(s) 70, 169, 287
FatI CATG 6 cut(s) 180, 303, 311, 421, 539, 582
FbaI TGATCA 1 cut(s) 22
FokI GGATG 1 cut(s) 85
FspBI CTAG 1 cut(s) 260
HaeIII GGCC 2 cut(s) 281, 661
HapII CCGG 2 cut(s) 328, 458
HgaI GACGC 1 cut(s) 163
Hin1II CATG 6 cut(s) 184, 307, 315, 425, 543, 586
HindIII AAGCTT 1 cut(s) 236
HinfI GANTC 2 cut(s) 218, 451
HpaII CCGG 2 cut(s) 328, 458
HphI GGTGA 2 cut(s) 17, 277
Hpy166II GTNNAC 1 cut(s) 319
Hpy188I TCNGA 1 cut(s) 475
Hpy188III TCNNGA 1 cut(s) 583
Hpy8I GTNNAC 1 cut(s) 319
HpyAV CCTTC 6 cut(s) 78, 292, 329, 397, 460, 550
HpyCH4III ACNGT 1 cut(s) 679
HpyCH4IV ACGT 3 cut(s) 243, 276, 499
HpyCH4V TGCA 5 cut(s) 14, 113, 124, 149, 421
HpySE526I ACGT 3 cut(s) 243, 276, 499
Hsp92II CATG 6 cut(s) 184, 307, 315, 425, 543, 586
KroI GCCGGC 1 cut(s) 457
KroNI GCCGGC 1 cut(s) 459
Ksp22I TGATCA 1 cut(s) 22
Kzo9I GATC 2 cut(s) 22, 648
LguI GCTCTTC 1 cut(s) 230
LmnI GCTCC 1 cut(s) 54
LpnPI CCDG 7 cut(s) 101, 280, 341, 350, 454, 471, 631
LweI GCATC 2 cut(s) 107, 408
MaeI CTAG 1 cut(s) 260
MaeII ACGT 3 cut(s) 243, 276, 499
MalI GATC 2 cut(s) 24, 650
MboI GATC 2 cut(s) 22, 648
MboII GAAGA 6 cut(s) 169, 217, 439, 494, 515, 535
MluCI AATT 3 cut(s) 6, 54, 342
MlyI GAGTC 1 cut(s) 212
MmeI TCCRAC 1 cut(s) 235
MnlI CCTC 4 cut(s) 372, 583, 603, 650
Mph1103I ATGCAT 1 cut(s) 423
MroNI GCCGGC 1 cut(s) 457
MseI TTAA 1 cut(s) 9
MslI CAYNNNNRTG 1 cut(s) 169
MspI CCGG 2 cut(s) 328, 458
Mva1269I GAATGC 1 cut(s) 135
NaeI GCCGGC 1 cut(s) 459
NdeII GATC 2 cut(s) 22, 648
NgoMIV GCCGGC 1 cut(s) 457
NlaIII CATG 6 cut(s) 184, 307, 315, 425, 543, 586
NlaIV GGNNCC 1 cut(s) 265
NsiI ATGCAT 1 cut(s) 423
NspI RCATGY 1 cut(s) 425
PagI TCATGA 1 cut(s) 582
PciSI GCTCTTC 1 cut(s) 230
PctI GAATGC 1 cut(s) 135
PdiI GCCGGC 1 cut(s) 459
PfeI GAWTC 1 cut(s) 451
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
PshBI ATTAAT 1 cut(s) 9
PsiI TTATAA 1 cut(s) 552
PspN4I GGNNCC 1 cut(s) 265
PspPI GGNCC 1 cut(s) 659
RseI CAYNNNNRTG 1 cut(s) 169
SapI GCTCTTC 1 cut(s) 230
SaqAI TTAA 1 cut(s) 9
Sau3AI GATC 2 cut(s) 22, 648
Sau96I GGNCC 1 cut(s) 659
SchI GAGTC 1 cut(s) 212
SetI ASST 9 cut(s) 22, 240, 246, 265, 279, 340, 471, 502, 647
SfaNI GCATC 2 cut(s) 107, 408
SmiMI CAYNNNNRTG 1 cut(s) 169
Sse9I AATT 3 cut(s) 6, 54, 342
SsiI CCGC 1 cut(s) 133
SspMI CTAG 1 cut(s) 260
TaaI ACNGT 1 cut(s) 679
TaiI ACGT 3 cut(s) 246, 279, 502
TaqI TCGA 3 cut(s) 324, 434, 674
TasI AATT 3 cut(s) 6, 54, 342
TfiI GAWTC 1 cut(s) 451
Tru1I TTAA 1 cut(s) 9
Tru9I TTAA 1 cut(s) 9
TscAI CASTG 1 cut(s) 658
TspDTI ATGAA 3 cut(s) 169, 479, 503
TspRI CASTG 1 cut(s) 658
VspI ATTAAT 1 cut(s) 9
XceI RCATGY 1 cut(s) 425
XcmI CCANNNNNNNNNTGG 1 cut(s) 274
XspI CTAG 1 cut(s) 260
Zsp2I ATGCAT 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.