RchiOBHm_Chr2g0124701

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001089
Physical Location & Seq
Reverse (-)
38021379 .. 38022420
1042 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49686

Sequence Viewer

Length: 312 bp
ATGAGGACAGAGAAAGAAGTGCATATGAGGGTGGCGATGAACAAGTGGGATGGCGAGCAGCCGGCGCTAAAACAAGGGGTGTTGGAGAAGATGATGAAGGATAGGGAAACAGGGGGAGTAAGGTTCGGCGTGCAGATGGCGATTTGGGCCACGTATAGGACTGGTTGGTTGTGGAAGAGGCAGCATGTGATTATGAATCCTCAATGTTTGGATTTGCCAGTGGCGTTTGTGCCTGGCACCACCACCATAGGTTTTGGAATTTTGATGGGTGCTGTGCCTTGGACGTGCTACGTTCCCATGCTAGCAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

103

Amino Acids

11.75

Weight (kDa)

9.1

Isoelectric Point (pI)

36.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 236
AcsI RAATTY 1 cut(s) 258
AfiI CCNNNNNNNGG 1 cut(s) 156
AjiI CACGTC 1 cut(s) 285
AjnI CCWGG 1 cut(s) 232
AoxI GGCC 1 cut(s) 147
ApeKI GCWGC 2 cut(s) 58, 181
ApoI RAATTY 1 cut(s) 258
AspLEI GCGC 1 cut(s) 67
AspS9I GGNCC 1 cut(s) 147
AsuNHI GCTAGC 1 cut(s) 301
BanI GGYRCC 1 cut(s) 236
BbvI GCAGC 2 cut(s) 70, 193
BccI CCATC 3 cut(s) 44, 130, 259
BciT130I CCWGG 1 cut(s) 234
BfaI CTAG 1 cut(s) 302
BfoI RGCGCY 1 cut(s) 68
BisI GCNGC 2 cut(s) 59, 182
BlsI GCNGC 2 cut(s) 60, 183
Bme1390I CCNGG 1 cut(s) 234
BmgBI CACGTC 1 cut(s) 285
BmgT120I GGNCC 1 cut(s) 147
BmiI GGNNCC 1 cut(s) 238
BmrFI CCNGG 1 cut(s) 234
BmtI GCTAGC 1 cut(s) 305
BsaAI YACGTR 1 cut(s) 153
BsaJI CCNNGG 1 cut(s) 278
Bsc4I CCNNNNNNNGG 1 cut(s) 156
Bse118I RCCGGY 1 cut(s) 61
Bse1I ACTGG 2 cut(s) 166, 218
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 1 cut(s) 278
BseGI GGATG 1 cut(s) 55
BseLI CCNNNNNNNGG 1 cut(s) 156
BseNI ACTGG 2 cut(s) 166, 218
BseXI GCAGC 2 cut(s) 70, 193
BsgI GTGCAG 1 cut(s) 152
BshFI GGCC 1 cut(s) 149
BshNI GGYRCC 1 cut(s) 236
BsiSI CCGG 1 cut(s) 62
BslI CCNNNNNNNGG 1 cut(s) 156
BsnI GGCC 1 cut(s) 149
BspANI GGCC 1 cut(s) 149
BspLI GGNNCC 1 cut(s) 238
BspOI GCTAGC 1 cut(s) 305
BspT107I GGYRCC 1 cut(s) 236
BsrFI RCCGGY 1 cut(s) 61
BsrI ACTGG 2 cut(s) 166, 218
BssAI RCCGGY 1 cut(s) 61
BssECI CCNNGG 1 cut(s) 278
BssT1I CCWWGG 1 cut(s) 278
Bst2UI CCWGG 1 cut(s) 234
Bst6I CTCTTC 1 cut(s) 170
BstBAI YACGTR 1 cut(s) 153
BstC8I GCNNGC 4 cut(s) 56, 63, 131, 303
BstF5I GGATG 1 cut(s) 55
BstH2I RGCGCY 1 cut(s) 68
BstHHI GCGC 1 cut(s) 67
BstMWI GCNNNNNNNGC 2 cut(s) 64, 146
BstNI CCWGG 1 cut(s) 234
BstNSI RCATGY 1 cut(s) 188
BstSCI CCNGG 1 cut(s) 232
BstV1I GCAGC 2 cut(s) 70, 193
BsuRI GGCC 1 cut(s) 149
BtgZI GCGATG 1 cut(s) 50
BtrI CACGTC 1 cut(s) 285
BtsCI GGATG 1 cut(s) 55
BtsIMutI CAGTG 1 cut(s) 225
Cac8I GCNNGC 4 cut(s) 56, 63, 131, 303
CfoI GCGC 1 cut(s) 67
Cfr10I RCCGGY 1 cut(s) 61
Cfr13I GGNCC 1 cut(s) 147
CviAII CATG 2 cut(s) 185, 298
CviJI RGCY 2 cut(s) 61, 149
CviKI_1 RGCY 2 cut(s) 61, 149
Eam1104I CTCTTC 1 cut(s) 170
EarI CTCTTC 1 cut(s) 170
Eco130I CCWWGG 1 cut(s) 278
EcoRII CCWGG 1 cut(s) 232
EcoT14I CCWWGG 1 cut(s) 278
ErhI CCWWGG 1 cut(s) 278
FaeI CATG 2 cut(s) 188, 301
FaiI YATR 7 cut(s) 24, 26, 156, 186, 194, 248, 299
FatI CATG 2 cut(s) 184, 297
FauNDI CATATG 1 cut(s) 24
Fnu4HI GCNGC 2 cut(s) 59, 182
FokI GGATG 1 cut(s) 62
Fsp4HI GCNGC 2 cut(s) 59, 182
FspBI CTAG 1 cut(s) 302
GlaI GCGC 1 cut(s) 66
GluI GCNGC 2 cut(s) 59, 182
HaeII RGCGCY 1 cut(s) 68
HaeIII GGCC 1 cut(s) 149
HapII CCGG 1 cut(s) 62
HhaI GCGC 1 cut(s) 67
Hin1II CATG 2 cut(s) 188, 301
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HinfI GANTC 1 cut(s) 196
HpaII CCGG 1 cut(s) 62
HpyAV CCTTC 1 cut(s) 91
HpyCH4IV ACGT 3 cut(s) 152, 284, 291
HpyCH4V TGCA 2 cut(s) 22, 133
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 146
HpySE526I ACGT 3 cut(s) 152, 284, 291
Hsp92II CATG 2 cut(s) 188, 301
HspAI GCGC 1 cut(s) 65
KroI GCCGGC 1 cut(s) 61
KroNI GCCGGC 1 cut(s) 63
LpnPI CCDG 6 cut(s) 75, 96, 147, 219, 231, 246
Lsp1109I GCAGC 2 cut(s) 70, 193
MaeI CTAG 1 cut(s) 302
MaeII ACGT 3 cut(s) 152, 284, 291
MboII GAAGA 2 cut(s) 100, 187
MluCI AATT 1 cut(s) 258
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 3 cut(s) 21, 171, 210
MroNI GCCGGC 1 cut(s) 61
MseI TTAA 1 cut(s) 310
MspI CCGG 1 cut(s) 62
MspR9I CCNGG 1 cut(s) 234
MvaI CCWGG 1 cut(s) 234
MwoI GCNNNNNNNGC 2 cut(s) 64, 146
NaeI GCCGGC 1 cut(s) 63
NdeI CATATG 1 cut(s) 24
NgoMIV GCCGGC 1 cut(s) 61
NheI GCTAGC 1 cut(s) 301
NlaIII CATG 2 cut(s) 188, 301
NlaIV GGNNCC 1 cut(s) 238
NspI RCATGY 1 cut(s) 188
PdiI GCCGGC 1 cut(s) 63
PfeI GAWTC 1 cut(s) 196
PkrI GCNGC 2 cut(s) 60, 183
Ppu21I YACGTR 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 232
PspN4I GGNNCC 1 cut(s) 238
PspPI GGNCC 1 cut(s) 147
SaqAI TTAA 1 cut(s) 310
SatI GCNGC 2 cut(s) 59, 182
Sau96I GGNCC 1 cut(s) 147
ScrFI CCNGG 1 cut(s) 234
SetI ASST 5 cut(s) 125, 155, 253, 287, 294
Sse9I AATT 1 cut(s) 258
SspMI CTAG 1 cut(s) 302
StyD4I CCNGG 1 cut(s) 232
StyI CCWWGG 1 cut(s) 278
TaiI ACGT 3 cut(s) 155, 287, 294
TasI AATT 1 cut(s) 258
TfiI GAWTC 1 cut(s) 196
Tru1I TTAA 1 cut(s) 310
Tru9I TTAA 1 cut(s) 310
TscAI CASTG 1 cut(s) 225
TseI GCWGC 2 cut(s) 58, 181
TspDTI ATGAA 3 cut(s) 53, 110, 209
TspRI CASTG 1 cut(s) 225
XapI RAATTY 1 cut(s) 258
XceI RCATGY 1 cut(s) 188
XspI CTAG 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.