Rmu_ssc0000242.1_g000009

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000242.1
Physical Location & Seq
Forward (+)
35799 .. 36302
504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000242.1_g000009.1.cds

Sequence Viewer

Length: 504 bp
atgtctttggttccccaaacttcaagtttccaactcgactctctttttctatctaactttaacatctcaaacacaacattcggggctgactgtgatataacccttaaaatagagaaccccaacttggtctcgacagttcatgtcaacagcataaagggctcgatttcgtacaacaacaactttcttgcaatgtactcggtagagccatttgagttgggatacatggagtatagaccagtgcacatgaagatatcaaaatatcgaacaatgacaatgaatagatgggtttcagacgagatcaataggcaacgagatgagaatgtagttgtgagtttcaacctgacaatgtttgtgtcagctacatatacgaccggatggtggggaatcgagaagattgtattgaaccctcagtgtttggatttgaaggttgccttcctttctactgctgggtttggacgttgggtaaatggagggccaatgaaatgctcacttcctatgtcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

167

Amino Acids

18.95

Weight (kDa)

6.71

Isoelectric Point (pI)

36.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 170, 194
AfiI CCNNNNNNNGG 2 cut(s) 124, 378
AgsI TTSAA 4 cut(s) 24, 337, 403, 424
AjuI GAANNNNNNNTTGG 2 cut(s) 107, 139
AluBI AGCT 1 cut(s) 359
AluI AGCT 1 cut(s) 359
Alw21I GWGCWC 1 cut(s) 243
Alw26I GTCTC 1 cut(s) 133
Alw44I GTGCAC 1 cut(s) 239
AoxI GGCC 1 cut(s) 473
ApaLI GTGCAC 1 cut(s) 239
AspS9I GGNCC 1 cut(s) 473
BaeGI GKGCMC 1 cut(s) 243
BanII GRGCYC 1 cut(s) 161
Bbv12I GWGCWC 1 cut(s) 243
BccI CCATC 2 cut(s) 276, 369
BcgI CGANNNNNNTGC 2 cut(s) 177, 211
BciVI GTATCC 1 cut(s) 212
BcoDI GTCTC 1 cut(s) 133
BfuI GTATCC 1 cut(s) 212
BmgT120I GGNCC 1 cut(s) 473
BmiI GGNNCC 1 cut(s) 12
BsaI GGTCTC 1 cut(s) 133
BsaWI WCCGGW 1 cut(s) 371
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 378
Bse1I ACTGG 1 cut(s) 236
Bse3DI GCAATG 1 cut(s) 195
BseGI GGATG 1 cut(s) 380
BseLI CCNNNNNNNGG 2 cut(s) 124, 378
BseMI GCAATG 1 cut(s) 195
BseMII CTCAG 1 cut(s) 422
BseNI ACTGG 1 cut(s) 236
BseSI GKGCMC 1 cut(s) 243
BseYI CCCAGC 1 cut(s) 446
Bsh1285I CGRYCG 1 cut(s) 372
BshFI GGCC 1 cut(s) 475
BsiEI CGRYCG 1 cut(s) 372
BsiHKAI GWGCWC 1 cut(s) 243
BsiSI CCGG 1 cut(s) 372
BslI CCNNNNNNNGG 2 cut(s) 124, 378
BsmAI GTCTC 1 cut(s) 133
BsnI GGCC 1 cut(s) 475
Bso31I GGTCTC 1 cut(s) 133
Bsp1286I GDGCHC 2 cut(s) 161, 243
Bsp143I GATC 1 cut(s) 297
BspANI GGCC 1 cut(s) 475
BspCNI CTCAG 1 cut(s) 421
BspHI TCATGA 1 cut(s) 500
BspLI GGNNCC 1 cut(s) 12
BspTNI GGTCTC 1 cut(s) 133
BsrDI GCAATG 1 cut(s) 195
BsrI ACTGG 1 cut(s) 236
BssMI GATC 1 cut(s) 297
Bst4CI ACNGT 2 cut(s) 92, 136
BstDEI CTNAG 1 cut(s) 408
BstF5I GGATG 1 cut(s) 380
BstKTI GATC 1 cut(s) 300
BstMAI GTCTC 1 cut(s) 133
BstMBI GATC 1 cut(s) 297
BstMCI CGRYCG 1 cut(s) 372
BstMWI GCNNNNNNNGC 1 cut(s) 156
BstSLI GKGCMC 1 cut(s) 243
BsuI GTATCC 1 cut(s) 212
BsuRI GGCC 1 cut(s) 475
BtsCI GGATG 1 cut(s) 380
BtsIMutI CAGTG 2 cut(s) 243, 416
CciI TCATGA 1 cut(s) 500
Cfr13I GGNCC 1 cut(s) 473
Csp6I GTAC 2 cut(s) 169, 193
CviAII CATG 4 cut(s) 140, 223, 244, 501
CviJI RGCY 5 cut(s) 86, 159, 205, 359, 475
CviKI_1 RGCY 5 cut(s) 86, 159, 205, 359, 475
CviQI GTAC 2 cut(s) 169, 193
DdeI CTNAG 1 cut(s) 408
DpnI GATC 1 cut(s) 299
DpnII GATC 1 cut(s) 297
Eco24I GRGCYC 1 cut(s) 161
Eco31I GGTCTC 1 cut(s) 133
Eco32I GATATC 1 cut(s) 252
EcoRV GATATC 1 cut(s) 252
EcoT38I GRGCYC 1 cut(s) 161
FaeI CATG 4 cut(s) 143, 226, 247, 504
FalI AAGNNNNNCTT 2 cut(s) 416, 448
FatI CATG 4 cut(s) 139, 222, 243, 500
FokI GGATG 1 cut(s) 387
FriOI GRGCYC 1 cut(s) 161
GsaI CCCAGC 1 cut(s) 450
HaeIII GGCC 1 cut(s) 475
HapII CCGG 1 cut(s) 372
Hin1II CATG 4 cut(s) 143, 226, 247, 504
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HinfI GANTC 2 cut(s) 38, 384
HpaII CCGG 1 cut(s) 372
Hpy166II GTNNAC 2 cut(s) 145, 241
Hpy188I TCNGA 1 cut(s) 292
Hpy188III TCNNGA 3 cut(s) 130, 388, 501
Hpy8I GTNNAC 2 cut(s) 145, 241
HpyAV CCTTC 2 cut(s) 418, 442
HpyCH4III ACNGT 2 cut(s) 92, 136
HpyCH4IV ACGT 1 cut(s) 457
HpyCH4V TGCA 2 cut(s) 188, 241
HpyF10VI GCNNNNNNNGC 1 cut(s) 156
HpyF3I CTNAG 1 cut(s) 408
HpySE526I ACGT 1 cut(s) 457
Hsp92II CATG 4 cut(s) 143, 226, 247, 504
Kzo9I GATC 1 cut(s) 297
LpnPI CCDG 4 cut(s) 249, 353, 385, 432
MaeII ACGT 1 cut(s) 457
MalI GATC 1 cut(s) 299
MboI GATC 1 cut(s) 297
MboII GAAGA 2 cut(s) 259, 403
MhlI GDGCHC 2 cut(s) 161, 243
MlyI GAGTC 1 cut(s) 32
MmeI TCCRAC 1 cut(s) 55
MnlI CCTC 2 cut(s) 417, 464
MseI TTAA 2 cut(s) 60, 105
MspI CCGG 1 cut(s) 372
MwoI GCNNNNNNNGC 1 cut(s) 156
NdeII GATC 1 cut(s) 297
NlaIII CATG 4 cut(s) 143, 226, 247, 504
NlaIV GGNNCC 1 cut(s) 12
PagI TCATGA 1 cut(s) 500
PfeI GAWTC 1 cut(s) 384
PleI GAGTC 1 cut(s) 32
PpsI GAGTC 1 cut(s) 32
PspFI CCCAGC 1 cut(s) 446
PspN4I GGNNCC 1 cut(s) 12
PspPI GGNCC 1 cut(s) 473
RsaI GTAC 2 cut(s) 170, 194
RsaNI GTAC 2 cut(s) 169, 193
SaqAI TTAA 2 cut(s) 60, 105
Sau3AI GATC 1 cut(s) 297
Sau96I GGNCC 1 cut(s) 473
SchI GAGTC 1 cut(s) 32
SduI GDGCHC 2 cut(s) 161, 243
SetI ASST 4 cut(s) 342, 361, 429, 460
TaaI ACNGT 2 cut(s) 92, 136
TaiI ACGT 1 cut(s) 460
TaqI TCGA 5 cut(s) 36, 131, 161, 262, 387
TatI WGTACW 1 cut(s) 192
TfiI GAWTC 1 cut(s) 384
Tru1I TTAA 2 cut(s) 60, 105
Tru9I TTAA 2 cut(s) 60, 105
TscAI CASTG 2 cut(s) 243, 416
TspDTI ATGAA 4 cut(s) 128, 260, 290, 494
TspRI CASTG 2 cut(s) 243, 416
VneI GTGCAC 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.