RLG00000023818

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
28655182 .. 28655880
699 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023818

Sequence Viewer

Length: 699 bp
ATGGAAATGGATGCAAAACGTCAGCGATCAATTACGATGCCGCTTCTCCCAGTTTCGAATAACCCTTCAAAGCCTTACATTTCGCGTTCTTTTGGATCACACTACATTCCCGATTTCACCGTTAGCCAGCTCATGATTATGTTAATCACATTAGGAACCATTTTGTCCTTGCCATGCATATTCATGTCTATGTCCCAATTTCCGCAAACCCCAAACATCCAGCTCCACTCGCTCTTCATTTCCAAACTCAACATCTCCAACACAACGTTAGGGGCTAATTGGGACTTGACCCTTAAAATAGAGAATCCCAACTTAGTCGCGTGGATTCGCTTCAACGACATAAAAGGCTCAATTTTGTACAAGAATAACCATCTCGTAATGTACTCCGTTGAGCCGTTTGTATTGGGATTGAAGGAAAACAGAATTATGCAAATGAAAATGTCAACCCATAAGCTGGAAATGAACAAATGGGTTTTGGAAGACATTGGTAAGCAATATCACGATGGTGGAGCTGTCCAGTTTAGCCTGCAAATGTCTTTTTGGGGTATGTATGGAAATGGGTGGAGGGGAAAACAGAATTTTATAATGAATCCTCGATGTTCGCATTTGAAGGTTGGCTTCTTGCCTCAAACAGGGTTCGGAAGCTGGTTAAGGAAAGGAGAACGTATGATGTGCTCTGTTAATCCAAATGAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

233

Amino Acids

26.67

Weight (kDa)

9.49

Isoelectric Point (pI)

44.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 584
AccB7I CCANNNNNTGG 1 cut(s) 454
AccII CGCG 2 cut(s) 85, 320
AciI CCGC 2 cut(s) 41, 203
AclI AACGTT 1 cut(s) 266
AclWI GGATC 1 cut(s) 103
AcsI RAATTY 1 cut(s) 577
AfaI GTAC 2 cut(s) 359, 383
AfiI CCNNNNNNNGG 2 cut(s) 454, 632
AgsI TTSAA 4 cut(s) 69, 334, 412, 610
AleI CACNNNNGTG 1 cut(s) 504
AluBI AGCT 5 cut(s) 130, 223, 454, 512, 645
AluI AGCT 5 cut(s) 130, 223, 454, 512, 645
Alw21I GWGCWC 1 cut(s) 677
AlwI GGATC 1 cut(s) 103
ApoI RAATTY 1 cut(s) 577
AsuHPI GGTGA 1 cut(s) 109
AsuII TTCGAA 1 cut(s) 56
BbsI GAAGAC 1 cut(s) 486
Bbv12I GWGCWC 1 cut(s) 677
BccI CCATC 2 cut(s) 378, 497
BceAI ACGGC 1 cut(s) 379
BisI GCNGC 1 cut(s) 41
BlsI GCNGC 1 cut(s) 42
BmiI GGNNCC 1 cut(s) 157
BmrI ACTGGG 1 cut(s) 44
BmsI GCATC 1 cut(s) 27
BmuI ACTGGG 1 cut(s) 44
BpiI GAAGAC 1 cut(s) 486
Bpu14I TTCGAA 1 cut(s) 56
Bsc4I CCNNNNNNNGG 2 cut(s) 454, 632
Bse1I ACTGG 2 cut(s) 50, 517
BseGI GGATG 2 cut(s) 16, 216
BseLI CCNNNNNNNGG 2 cut(s) 454, 632
BseNI ACTGG 2 cut(s) 50, 517
Bsh1236I CGCG 2 cut(s) 85, 320
BsiHKAI GWGCWC 1 cut(s) 677
BslFI GGGAC 2 cut(s) 178, 296
BslI CCNNNNNNNGG 2 cut(s) 454, 632
BsmFI GGGAC 2 cut(s) 178, 296
Bsp119I TTCGAA 1 cut(s) 56
Bsp1286I GDGCHC 1 cut(s) 677
Bsp1407I TGTACA 1 cut(s) 357
Bsp143I GATC 2 cut(s) 26, 95
BspACI CCGC 2 cut(s) 41, 203
BspFNI CGCG 2 cut(s) 85, 320
BspHI TCATGA 1 cut(s) 132
BspLI GGNNCC 1 cut(s) 157
BspPI GGATC 1 cut(s) 103
BspQI GCTCTTC 1 cut(s) 239
BspT104I TTCGAA 1 cut(s) 56
BsrGI TGTACA 1 cut(s) 357
BsrI ACTGG 2 cut(s) 50, 517
BssMI GATC 2 cut(s) 26, 95
Bst4CI ACNGT 1 cut(s) 121
Bst6I CTCTTC 1 cut(s) 239
BstAUI TGTACA 1 cut(s) 357
BstBI TTCGAA 1 cut(s) 56
BstC8I GCNNGC 2 cut(s) 128, 527
BstDEI CTNAG 1 cut(s) 313
BstENI CCTNNNNNAGG 1 cut(s) 630
BstF5I GGATG 2 cut(s) 16, 216
BstFNI CGCG 2 cut(s) 85, 320
BstKTI GATC 2 cut(s) 29, 98
BstMBI GATC 2 cut(s) 26, 95
BstMWI GCNNNNNNNGC 1 cut(s) 229
BstUI CGCG 2 cut(s) 85, 320
BstV2I GAAGAC 1 cut(s) 486
BtsCI GGATG 2 cut(s) 16, 216
Cac8I GCNNGC 2 cut(s) 128, 527
CciI TCATGA 1 cut(s) 132
Csp6I GTAC 2 cut(s) 358, 382
CviAII CATG 3 cut(s) 133, 174, 184
CviQI GTAC 2 cut(s) 358, 382
DdeI CTNAG 1 cut(s) 313
DpnI GATC 2 cut(s) 28, 97
DpnII GATC 2 cut(s) 26, 95
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
EcoNI CCTNNNNNAGG 1 cut(s) 630
EcoT22I ATGCAT 1 cut(s) 179
FaeI CATG 3 cut(s) 136, 177, 187
FalI AAGNNNNNCTT 2 cut(s) 602, 634
FaqI GGGAC 2 cut(s) 178, 296
FatI CATG 3 cut(s) 132, 173, 183
Fnu4HI GCNGC 1 cut(s) 41
FokI GGATG 2 cut(s) 23, 203
Fsp4HI GCNGC 1 cut(s) 41
GluI GCNGC 1 cut(s) 41
Hin1II CATG 3 cut(s) 136, 177, 187
HincII GTYRAC 1 cut(s) 444
HindII GTYRAC 1 cut(s) 444
HinfI GANTC 3 cut(s) 304, 325, 589
HphI GGTGA 1 cut(s) 109
Hpy166II GTNNAC 1 cut(s) 444
Hpy188I TCNGA 1 cut(s) 641
Hpy188III TCNNGA 3 cut(s) 110, 133, 500
Hpy8I GTNNAC 1 cut(s) 444
HpyAV CCTTC 3 cut(s) 75, 406, 604
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4IV ACGT 3 cut(s) 19, 266, 664
HpyCH4V TGCA 4 cut(s) 14, 177, 430, 529
HpyF10VI GCNNNNNNNGC 1 cut(s) 229
HpyF3I CTNAG 1 cut(s) 313
HpySE526I ACGT 3 cut(s) 19, 266, 664
Hsp92II CATG 3 cut(s) 136, 177, 187
Kzo9I GATC 2 cut(s) 26, 95
LguI GCTCTTC 1 cut(s) 239
LmnI GCTCC 2 cut(s) 228, 509
LpnPI CCDG 8 cut(s) 63, 140, 233, 440, 530, 539, 618, 631
LweI GCATC 1 cut(s) 27
MaeII ACGT 3 cut(s) 19, 266, 664
MalI GATC 2 cut(s) 28, 97
MboI GATC 2 cut(s) 26, 95
MboII GAAGA 2 cut(s) 226, 491
MhlI GDGCHC 1 cut(s) 677
MluCI AATT 6 cut(s) 30, 197, 277, 351, 423, 577
MmeI TCCRAC 1 cut(s) 282
MnlI CCTC 3 cut(s) 558, 603, 636
Mph1103I ATGCAT 1 cut(s) 179
MseI TTAA 4 cut(s) 143, 294, 650, 681
MslI CAYNNNNRTG 4 cut(s) 137, 182, 188, 504
MvnI CGCG 2 cut(s) 85, 320
MwoI GCNNNNNNNGC 1 cut(s) 229
NdeII GATC 2 cut(s) 26, 95
NlaIII CATG 3 cut(s) 136, 177, 187
NlaIV GGNNCC 1 cut(s) 157
NsiI ATGCAT 1 cut(s) 179
NspV TTCGAA 1 cut(s) 56
OliI CACNNNNGTG 1 cut(s) 504
PagI TCATGA 1 cut(s) 132
PciSI GCTCTTC 1 cut(s) 239
PfeI GAWTC 3 cut(s) 304, 325, 589
PflMI CCANNNNNTGG 1 cut(s) 454
PkrI GCNGC 1 cut(s) 42
PsiI TTATAA 1 cut(s) 584
Psp1406I AACGTT 1 cut(s) 266
PspN4I GGNNCC 1 cut(s) 157
RsaI GTAC 2 cut(s) 359, 383
RsaNI GTAC 2 cut(s) 358, 382
RseI CAYNNNNRTG 4 cut(s) 137, 182, 188, 504
SapI GCTCTTC 1 cut(s) 239
SaqAI TTAA 4 cut(s) 143, 294, 650, 681
SatI GCNGC 1 cut(s) 41
Sau3AI GATC 2 cut(s) 26, 95
SduI GDGCHC 1 cut(s) 677
SetI ASST 9 cut(s) 22, 132, 225, 269, 456, 514, 615, 647, 667
SfaNI GCATC 1 cut(s) 27
SfuI TTCGAA 1 cut(s) 56
SmiMI CAYNNNNRTG 4 cut(s) 137, 182, 188, 504
Sse9I AATT 6 cut(s) 30, 197, 277, 351, 423, 577
SsiI CCGC 2 cut(s) 41, 203
TaaI ACNGT 1 cut(s) 121
TaiI ACGT 3 cut(s) 22, 269, 667
TaqI TCGA 2 cut(s) 56, 595
TasI AATT 6 cut(s) 30, 197, 277, 351, 423, 577
TatI WGTACW 2 cut(s) 357, 381
TauI GCSGC 1 cut(s) 43
TfiI GAWTC 3 cut(s) 304, 325, 589
Tru1I TTAA 4 cut(s) 143, 294, 650, 681
Tru9I TTAA 4 cut(s) 143, 294, 650, 681
TspDTI ATGAA 5 cut(s) 172, 226, 449, 476, 602
TspGWI ACGGA 1 cut(s) 376
Van91I CCANNNNNTGG 1 cut(s) 454
XagI CCTNNNNNAGG 1 cut(s) 630
XapI RAATTY 1 cut(s) 577
Zsp2I ATGCAT 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.