Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001089

Physical Location & Seq

Genomic Coordinates Reverse (-)

58998423 .. 58998800

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0424700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGACTGCGATGACAACACGTATGGTGGCAAAGTTGTCGCCCCAAGACGATAACGAGCCTCTGAACTTTGGAAACCTCAGGAGTGCGGGTTCGGCTTTTCTGGCCCAGCACCATTTCATGGTCGGGAGACTGAATAGTTGTCGACCTGCCAACGTTGATTCATTCCGAAGTGCCATACAGTCGATGTGGAGGCTGACCGAAACGGTGGATGTGCAGGCTCGGATAGATCGTTTCTTGTTTACCTTCACCAAAAAACGAGATATTGCTCGGATCAAGAAAGGAGGGCCATGGAGTTTCCAGTGCACCATGATCCTTCTGAATGACTACGACAGATTTTCGGAGATTGTGACAGTTCCTCTTGACTTCGTGTGGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

125

Amino Acids

14.41

Weight (kDa)

9.5

Isoelectric Point (pI)

41.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4283	PF14111	37 - 110	2.2e-07	Domain of unknown function (DUF4283)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52460
fragaria_vesca	FvH4_3g40821 FvH4_5g22901 FvH4_6g24970
malus_domestica	MD07G1151300.v1.1 MD12G1039100.v1.1 MD12G1087900.v1.1 MD14G1037800.v1.1 MD14G1037900.v1.1
prunus_persica	Prupe.7G048100_v2.0.a1 Prupe.7G096300_v2.0.a1 Prupe.7G096500_v2.0.a1 Prupe.7G096700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0124701 RchiOBHm_Chr3g0475771 RchiOBHm_Chr5g0073621 RchiOBHm_Chr7g0211331 RchiOBHm_Chr7g0211341
rosa_laevigata	RLG00000003008 RLG00000003009 RLG00000018813 RLG00000023818 RLG00000036394
rosa_multiflora	Rmu_sc0000539.1_g000081 Rmu_sc0001226.1_g000003 Rmu_ssc0000242.1_g000009 Rmu_ssc0000242.1_g000017
rosa_roxburghii	Rroxscaffold_2G00119740 Rroxscaffold_3G00247920
rosa_rugosa	Rorug02G0251900 Rorug04G0403500.1 Rorug05G0424700 Rorug05G0425600 Rorug05G0425600 Rorug07G0125100 Rorug07G0125200 Rorug07G0170100
rosa_samantha	Rh2AG310900 Rh2CG298300 Rh2DG334900 Rh3AG201100 Rh3CG226100 Rh3DG226700 Rh5CG526300 Rh5CG526600 Rh5DG029800 Rh5DG515500 Rh5DG515600 Rh7AG257500 Rh7AG257600 Rh7BG251600 Rh7BG251700 Rh7DG264200 Rh7DG264300 Rh7DG309500
rosa_wichuraiana	Rw2G025150 Rw3G018290 Rw5G044820 Rw7G022010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	154
AccB7I	CCANNNNNTGG	1 cut(s)	118
AccI	GTMKAC	1 cut(s)	142
AciI	CCGC	1 cut(s)	86
AclI	AACGTT	1 cut(s)	153
AclWI	GGATC	2 cut(s)	278, 304
AfiI	CCNNNNNNNGG	1 cut(s)	118
AflIII	ACRYGT	1 cut(s)	17
AloI	GAACNNNNNNTCC	2 cut(s)	73, 105
Alw21I	GWGCWC	1 cut(s)	305
Alw26I	GTCTC	1 cut(s)	121
Alw44I	GTGCAC	1 cut(s)	301
AlwI	GGATC	2 cut(s)	278, 304
AoxI	GGCC	2 cut(s)	102, 284
ApaLI	GTGCAC	1 cut(s)	301
AspS9I	GGNCC	2 cut(s)	103, 284
AsuHPI	GGTGA	1 cut(s)	238
AxyI	CCTNAGG	1 cut(s)	77
BaeGI	GKGCMC	1 cut(s)	305
Bbv12I	GWGCWC	1 cut(s)	305
BcgI	CGANNNNNNTGC	2 cut(s)	18, 52
BcoDI	GTCTC	1 cut(s)	121
BfuAI	ACCTGC	1 cut(s)	154
BmgT120I	GGNCC	2 cut(s)	103, 284
BsaAI	YACGTR	1 cut(s)	20
BsaJI	CCNNGG	1 cut(s)	287
BsaXI	ACNNNNNCTCC	2 cut(s)	73, 103
Bsc4I	CCNNNNNNNGG	1 cut(s)	118
Bse1I	ACTGG	1 cut(s)	298
Bse21I	CCTNAGG	1 cut(s)	77
BseDI	CCNNGG	1 cut(s)	287
BseGI	GGATG	1 cut(s)	214
BseLI	CCNNNNNNNGG	1 cut(s)	118
BseMII	CTCAG	1 cut(s)	91
BseNI	ACTGG	1 cut(s)	298
BseSI	GKGCMC	1 cut(s)	305
BseYI	CCCAGC	1 cut(s)	105
BsgI	GTGCAG	1 cut(s)	233
BshFI	GGCC	2 cut(s)	104, 286
BsiHKAI	GWGCWC	1 cut(s)	305
BslI	CCNNNNNNNGG	1 cut(s)	118
BsmAI	GTCTC	1 cut(s)	121
BsnI	GGCC	2 cut(s)	104, 286
Bsp1286I	GDGCHC	1 cut(s)	305
Bsp143I	GATC	3 cut(s)	226, 270, 309
Bsp19I	CCATGG	1 cut(s)	287
BspACI	CCGC	1 cut(s)	86
BspANI	GGCC	2 cut(s)	104, 286
BspCNI	CTCAG	1 cut(s)	90
BspMI	ACCTGC	1 cut(s)	154
BspPI	GGATC	2 cut(s)	278, 304
BsrI	ACTGG	1 cut(s)	298
BssECI	CCNNGG	1 cut(s)	287
BssMI	GATC	3 cut(s)	226, 270, 309
BssT1I	CCWWGG	1 cut(s)	287
Bst4CI	ACNGT	3 cut(s)	180, 205, 352
BstBAI	YACGTR	1 cut(s)	20
BstC8I	GCNNGC	1 cut(s)	216
BstDEI	CTNAG	1 cut(s)	77
BstDSI	CCRYGG	1 cut(s)	287
BstF5I	GGATG	1 cut(s)	214
BstKTI	GATC	3 cut(s)	229, 273, 312
BstMAI	GTCTC	1 cut(s)	121
BstMBI	GATC	3 cut(s)	226, 270, 309
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 101
BstSLI	GKGCMC	1 cut(s)	305
Bsu36I	CCTNAGG	1 cut(s)	77
BsuRI	GGCC	2 cut(s)	104, 286
BtgI	CCRYGG	1 cut(s)	287
BtgZI	GCGATG	1 cut(s)	23
BtsCI	GGATG	1 cut(s)	214
BtsIMutI	CAGTG	1 cut(s)	305
BveI	ACCTGC	1 cut(s)	154
Cac8I	GCNNGC	1 cut(s)	216
Cfr13I	GGNCC	2 cut(s)	103, 284
CviAII	CATG	3 cut(s)	118, 288, 307
CviJI	RGCY	6 cut(s)	58, 95, 104, 193, 218, 286
CviKI_1	RGCY	6 cut(s)	58, 95, 104, 193, 218, 286
DdeI	CTNAG	1 cut(s)	77
DpnI	GATC	3 cut(s)	228, 272, 311
DpnII	GATC	3 cut(s)	226, 270, 309
Eco130I	CCWWGG	1 cut(s)	287
Eco81I	CCTNAGG	1 cut(s)	77
EcoT14I	CCWWGG	1 cut(s)	287
ErhI	CCWWGG	1 cut(s)	287
FaeI	CATG	3 cut(s)	121, 291, 310
FaiI	YATR	5 cut(s)	23, 119, 176, 289, 308
FatI	CATG	3 cut(s)	117, 287, 306
FauI	CCCGC	1 cut(s)	79
FblI	GTMKAC	1 cut(s)	142
FokI	GGATG	1 cut(s)	221
GsaI	CCCAGC	1 cut(s)	109
HaeIII	GGCC	2 cut(s)	104, 286
Hin1II	CATG	3 cut(s)	121, 291, 310
HincII	GTYRAC	1 cut(s)	143
HindII	GTYRAC	1 cut(s)	143
HinfI	GANTC	1 cut(s)	158
HphI	GGTGA	1 cut(s)	238
Hpy166II	GTNNAC	3 cut(s)	143, 240, 303
Hpy188I	TCNGA	6 cut(s)	63, 167, 222, 270, 318, 340
Hpy188III	TCNNGA	4 cut(s)	79, 124, 274, 359
Hpy8I	GTNNAC	3 cut(s)	143, 240, 303
HpyAV	CCTTC	2 cut(s)	253, 323
HpyCH4III	ACNGT	3 cut(s)	180, 205, 352
HpyCH4IV	ACGT	2 cut(s)	19, 153
HpyCH4V	TGCA	2 cut(s)	214, 303
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 101
HpyF3I	CTNAG	1 cut(s)	77
HpySE526I	ACGT	2 cut(s)	19, 153
Hsp92II	CATG	3 cut(s)	121, 291, 310
Kzo9I	GATC	3 cut(s)	226, 270, 309
LpnPI	CCDG	6 cut(s)	64, 86, 119, 159, 200, 311
MaeII	ACGT	2 cut(s)	19, 153
MaeIII	GTNAC	1 cut(s)	346
MalI	GATC	3 cut(s)	228, 272, 311
MboI	GATC	3 cut(s)	226, 270, 309
MhlI	GDGCHC	1 cut(s)	305
MnlI	CCTC	5 cut(s)	69, 86, 183, 275, 366
MwoI	GCNNNNNNNGC	2 cut(s)	92, 101
NcoI	CCATGG	1 cut(s)	287
NdeII	GATC	3 cut(s)	226, 270, 309
NlaIII	CATG	3 cut(s)	121, 291, 310
NmuCI	GTSAC	1 cut(s)	346
PcsI	WCGNNNNNNNCGW	1 cut(s)	226
PfeI	GAWTC	1 cut(s)	158
PflMI	CCANNNNNTGG	1 cut(s)	118
Ppu21I	YACGTR	1 cut(s)	20
Psp1406I	AACGTT	1 cut(s)	153
PspFI	CCCAGC	1 cut(s)	105
PspPI	GGNCC	2 cut(s)	103, 284
SalI	GTCGAC	1 cut(s)	141
Sau3AI	GATC	3 cut(s)	226, 270, 309
Sau96I	GGNCC	2 cut(s)	103, 284
SduI	GDGCHC	1 cut(s)	305
SetI	ASST	5 cut(s)	22, 78, 148, 156, 245
SsiI	CCGC	1 cut(s)	86
StyI	CCWWGG	1 cut(s)	287
TaaI	ACNGT	3 cut(s)	180, 205, 352
TaiI	ACGT	2 cut(s)	22, 156
TaqI	TCGA	2 cut(s)	142, 182
TaqII	GACCGA	1 cut(s)	212
TfiI	GAWTC	1 cut(s)	158
TscAI	CASTG	1 cut(s)	305
TseFI	GTSAC	1 cut(s)	346
Tsp45I	GTSAC	1 cut(s)	346
TspDTI	ATGAA	2 cut(s)	106, 150
TspRI	CASTG	1 cut(s)	305
Van91I	CCANNNNNTGG	1 cut(s)	118
VneI	GTGCAC	1 cut(s)	301
XmiI	GTMKAC	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.