Rh3AG201100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0001089
Physical Location & Seq
Reverse (-)
19828919 .. 19829891
973 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG201100.1

Sequence Viewer

Length: 735 bp
ATGACAATGGAAATGGATGCAAAAGGTCAGCTATCAATTACCATGCCGCTTCTCCCAGTTTCGAATAACTCTTCAAAGCCTTACATTTCGCGTTCTTTTGGATCACATTACATTCCCGATTTCACCCTTAGCCAGCTCATGATTTTGTTAATCACATTAGGAACCATTTTGTCCTTGCCATGCATATTCATGTCTATGTCCCAATTTCCGCAAACCCCAAACATCCAGCTCCATTCGCTCTTCATTTCCAAACTCAACATCTCCAACACAACGTTAGGGGCTAATTGGGACTTGACCCTTAAAATAGAGAATCCCAACTTAGTCTCGTGGATTCGCTTCAACGACATAAAAGGCTCAATTTTGTACAAGAATAACCATCTCGTAATGTACTCCGTGGAGCCGTTTGTATTGGGATTGAAGGAAAACAGAATTATGCAAATGAAAATGTCAAACCATAAGCTGGAAATGAACAAATGGGTTTTGGAAGAAATTGGTAAGCAATACCAAGATGGCGGAGCTGTCCAGTTTAGCCTGCAAATGTCTTTTTGGGGTATGTATAGAAATGGGTGGAGGGGAAAACAGAATTTTATAATGAATCCTCGATGTTCGGATTTGAAGGTTGGCTTCTTGCCTCAAACAGGGTTCGGAACCTGGTTAAGGAAAGGAGAACATATGATGTGCTCTGTTAATCCAAATGAAGACAAAGTGGATGGCTGTGAGCCTGTGATAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

244

Amino Acids

27.95

Weight (kDa)

9.02

Isoelectric Point (pI)

40.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 590
AccB7I CCANNNNNTGG 1 cut(s) 460
AccII CGCG 1 cut(s) 91
AciI CCGC 3 cut(s) 47, 209, 513
AclI AACGTT 1 cut(s) 272
AclWI GGATC 1 cut(s) 109
AcsI RAATTY 1 cut(s) 583
AfaI GTAC 2 cut(s) 365, 389
AfiI CCNNNNNNNGG 3 cut(s) 460, 638, 657
AgsI TTSAA 4 cut(s) 75, 340, 418, 616
AjnI CCWGG 1 cut(s) 650
AluBI AGCT 5 cut(s) 31, 136, 229, 460, 518
AluI AGCT 5 cut(s) 31, 136, 229, 460, 518
Alw21I GWGCWC 1 cut(s) 683
Alw26I GTCTC 1 cut(s) 328
AlwI GGATC 1 cut(s) 109
ApoI RAATTY 1 cut(s) 583
AsuHPI GGTGA 1 cut(s) 115
AsuII TTCGAA 1 cut(s) 62
BauI CACGAG 1 cut(s) 325
BbsI GAAGAC 1 cut(s) 705
Bbv12I GWGCWC 1 cut(s) 683
BccI CCATC 3 cut(s) 384, 503, 704
BceAI ACGGC 1 cut(s) 385
BciT130I CCWGG 1 cut(s) 652
BcoDI GTCTC 1 cut(s) 328
BisI GCNGC 1 cut(s) 47
BlsI GCNGC 1 cut(s) 48
Bme1390I CCNGG 1 cut(s) 652
BmiI GGNNCC 3 cut(s) 163, 399, 649
BmrFI CCNGG 1 cut(s) 652
BmrI ACTGGG 1 cut(s) 50
BmsI GCATC 1 cut(s) 7
BmuI ACTGGG 1 cut(s) 50
BpiI GAAGAC 1 cut(s) 705
Bpu10I CCTNAGC 1 cut(s) 128
Bpu14I TTCGAA 1 cut(s) 62
BsaJI CCNNGG 1 cut(s) 393
Bsc4I CCNNNNNNNGG 3 cut(s) 460, 638, 657
Bse1I ACTGG 2 cut(s) 56, 523
BseBI CCWGG 1 cut(s) 652
BseDI CCNNGG 1 cut(s) 393
BseGI GGATG 3 cut(s) 22, 222, 715
BseLI CCNNNNNNNGG 3 cut(s) 460, 638, 657
BseNI ACTGG 2 cut(s) 56, 523
Bsh1236I CGCG 1 cut(s) 91
BsiHKAI GWGCWC 1 cut(s) 683
BslFI GGGAC 2 cut(s) 184, 302
BslI CCNNNNNNNGG 3 cut(s) 460, 638, 657
BsmAI GTCTC 1 cut(s) 328
BsmFI GGGAC 2 cut(s) 184, 302
Bsp119I TTCGAA 1 cut(s) 62
Bsp1286I GDGCHC 1 cut(s) 683
Bsp1407I TGTACA 1 cut(s) 363
Bsp143I GATC 1 cut(s) 101
BspACI CCGC 3 cut(s) 47, 209, 513
BspFNI CGCG 1 cut(s) 91
BspHI TCATGA 1 cut(s) 138
BspLI GGNNCC 3 cut(s) 163, 399, 649
BspPI GGATC 1 cut(s) 109
BspQI GCTCTTC 1 cut(s) 245
BspT104I TTCGAA 1 cut(s) 62
BsrGI TGTACA 1 cut(s) 363
BsrI ACTGG 2 cut(s) 56, 523
BssECI CCNNGG 1 cut(s) 393
BssMI GATC 1 cut(s) 101
BssSI CACGAG 1 cut(s) 325
Bst2BI CACGAG 1 cut(s) 325
Bst2UI CCWGG 1 cut(s) 652
Bst6I CTCTTC 2 cut(s) 76, 245
BstAUI TGTACA 1 cut(s) 363
BstBI TTCGAA 1 cut(s) 62
BstC8I GCNNGC 2 cut(s) 134, 533
BstDEI CTNAG 2 cut(s) 128, 319
BstDSI CCRYGG 1 cut(s) 393
BstENI CCTNNNNNAGG 2 cut(s) 636, 655
BstF5I GGATG 3 cut(s) 22, 222, 715
BstFNI CGCG 1 cut(s) 91
BstKTI GATC 1 cut(s) 104
BstMAI GTCTC 1 cut(s) 328
BstMBI GATC 1 cut(s) 101
BstMWI GCNNNNNNNGC 1 cut(s) 235
BstNI CCWGG 1 cut(s) 652
BstSCI CCNGG 1 cut(s) 650
BstUI CGCG 1 cut(s) 91
BstV2I GAAGAC 1 cut(s) 705
BtgI CCRYGG 1 cut(s) 393
BtsCI GGATG 3 cut(s) 22, 222, 715
Cac8I GCNNGC 2 cut(s) 134, 533
CciI TCATGA 1 cut(s) 138
CsiI ACCWGGT 1 cut(s) 650
Csp6I GTAC 2 cut(s) 364, 388
CviAII CATG 4 cut(s) 43, 139, 180, 190
CviQI GTAC 2 cut(s) 364, 388
DdeI CTNAG 2 cut(s) 128, 319
DpnI GATC 1 cut(s) 103
DpnII GATC 1 cut(s) 101
Eam1104I CTCTTC 2 cut(s) 76, 245
EarI CTCTTC 2 cut(s) 76, 245
EciI GGCGGA 1 cut(s) 528
EcoNI CCTNNNNNAGG 2 cut(s) 636, 655
EcoRII CCWGG 1 cut(s) 650
EcoT22I ATGCAT 1 cut(s) 185
FaeI CATG 4 cut(s) 46, 142, 183, 193
FalI AAGNNNNNCTT 2 cut(s) 608, 640
FaqI GGGAC 2 cut(s) 184, 302
FatI CATG 4 cut(s) 42, 138, 179, 189
FauNDI CATATG 1 cut(s) 672
Fnu4HI GCNGC 1 cut(s) 47
FokI GGATG 3 cut(s) 29, 209, 722
Fsp4HI GCNGC 1 cut(s) 47
GluI GCNGC 1 cut(s) 47
Hin1II CATG 4 cut(s) 46, 142, 183, 193
HinfI GANTC 3 cut(s) 310, 331, 595
HphI GGTGA 1 cut(s) 115
Hpy188I TCNGA 2 cut(s) 610, 647
Hpy188III TCNNGA 2 cut(s) 116, 139
HpyAV CCTTC 2 cut(s) 412, 610
HpyCH4IV ACGT 1 cut(s) 272
HpyCH4V TGCA 4 cut(s) 20, 183, 436, 535
HpyF10VI GCNNNNNNNGC 1 cut(s) 235
HpyF3I CTNAG 2 cut(s) 128, 319
HpySE526I ACGT 1 cut(s) 272
Hsp92II CATG 4 cut(s) 46, 142, 183, 193
Kzo9I GATC 1 cut(s) 101
LguI GCTCTTC 1 cut(s) 245
LmnI GCTCC 3 cut(s) 234, 397, 515
LpnPI CCDG 9 cut(s) 69, 146, 239, 446, 536, 545, 624, 637, 664
LweI GCATC 1 cut(s) 7
MabI ACCWGGT 1 cut(s) 650
MaeII ACGT 1 cut(s) 272
MalI GATC 1 cut(s) 103
MboI GATC 1 cut(s) 101
MboII GAAGA 4 cut(s) 63, 232, 497, 710
MhlI GDGCHC 1 cut(s) 683
MluCI AATT 7 cut(s) 36, 203, 283, 357, 429, 489, 583
MmeI TCCRAC 1 cut(s) 288
MnlI CCTC 3 cut(s) 564, 609, 642
Mph1103I ATGCAT 1 cut(s) 185
MseI TTAA 4 cut(s) 149, 300, 656, 687
MslI CAYNNNNRTG 2 cut(s) 188, 194
MspR9I CCNGG 1 cut(s) 652
MvaI CCWGG 1 cut(s) 652
MvnI CGCG 1 cut(s) 91
MwoI GCNNNNNNNGC 1 cut(s) 235
NdeI CATATG 1 cut(s) 672
NdeII GATC 1 cut(s) 101
NlaIII CATG 4 cut(s) 46, 142, 183, 193
NlaIV GGNNCC 3 cut(s) 163, 399, 649
NsiI ATGCAT 1 cut(s) 185
NspV TTCGAA 1 cut(s) 62
PagI TCATGA 1 cut(s) 138
PciSI GCTCTTC 1 cut(s) 245
PfeI GAWTC 3 cut(s) 310, 331, 595
PflMI CCANNNNNTGG 1 cut(s) 460
PkrI GCNGC 1 cut(s) 48
PsiI TTATAA 1 cut(s) 590
Psp1406I AACGTT 1 cut(s) 272
Psp6I CCWGG 1 cut(s) 650
PspGI CCWGG 1 cut(s) 650
PspN4I GGNNCC 3 cut(s) 163, 399, 649
RsaI GTAC 2 cut(s) 365, 389
RsaNI GTAC 2 cut(s) 364, 388
RseI CAYNNNNRTG 2 cut(s) 188, 194
SapI GCTCTTC 1 cut(s) 245
SaqAI TTAA 4 cut(s) 149, 300, 656, 687
SatI GCNGC 1 cut(s) 47
Sau3AI GATC 1 cut(s) 101
ScrFI CCNGG 1 cut(s) 652
SduI GDGCHC 1 cut(s) 683
SexAI ACCWGGT 1 cut(s) 650
SfaNI GCATC 1 cut(s) 7
SfuI TTCGAA 1 cut(s) 62
SmiMI CAYNNNNRTG 2 cut(s) 188, 194
Sse9I AATT 7 cut(s) 36, 203, 283, 357, 429, 489, 583
SsiI CCGC 3 cut(s) 47, 209, 513
StyD4I CCNGG 1 cut(s) 650
TaiI ACGT 1 cut(s) 275
TaqI TCGA 2 cut(s) 62, 601
TasI AATT 7 cut(s) 36, 203, 283, 357, 429, 489, 583
TatI WGTACW 2 cut(s) 363, 387
TauI GCSGC 1 cut(s) 49
TfiI GAWTC 3 cut(s) 310, 331, 595
Tru1I TTAA 4 cut(s) 149, 300, 656, 687
Tru9I TTAA 4 cut(s) 149, 300, 656, 687
TspDTI ATGAA 6 cut(s) 178, 232, 455, 482, 608, 711
TspGWI ACGGA 1 cut(s) 382
Van91I CCANNNNNTGG 1 cut(s) 460
XagI CCTNNNNNAGG 2 cut(s) 636, 655
XapI RAATTY 1 cut(s) 583
Zsp2I ATGCAT 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.