Rorug07G0125200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001089
Physical Location & Seq
Forward (+)
9853240 .. 9855876
2637 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0125200.1

Sequence Viewer

Length: 1338 bp
ATGAAAATGGAGAGTCCGATTGCCACCGGATTACCCGACTCCCAGAACCCGGAAAATTCCTTCGTCTGGGACGAACAGTCTCAGCTCTACTTTCATGCCAGTACCGGATTCTACCATGACCCCAACGCCGGCTGGTACTACAGCACTCGCGACGGCCTTTATTACAAGTTCGAAGATGGAAACTACGTTCTTCTTCCCTCTCACCAGGGTAATAGTTTGGAAACCAGTCATGGCCAAATGGGTGCCACTGAGAATCCCAGTCAAGAAGAGCCCTTTTCAGCTGTAGGCAATACAGAGTGCAGTAGCAGTGATGAATGGCTAGAGGATACGCTTATTGAACTATATTTGTCTGGTTATTCCAACTTAGAAGCCAATGCTGGTGATCATGATATGGCAGTGTACCCCGAAACATTTGTACCTGATGGGAACAATGATGGTCACGAGCTCAATGAATCCACGCCAATTCCAGAAGACTATGGTGCTGTAATTGAGTCGAGTGAAAATGTCTCTGATGAAGGTGGTTCATGGGATGAAGAGAACTGGCGAGCTCAGTATGGTCAGGTCGTTCAAGATGCAGAAGTGCCAATCCCGGAGTCTTCACTGATAAGTTTATGGGACTGGGAAATGGTCACAAAGCCAAGAAATGATGGAAAATGTGAGGTACCAAGGCCAAGGCTTGTTGGGAGGTTAGCGAAGCAGTCTGCTAAGCTTCATCCTTCTCTGCCGTCTGGTGGTGGTCTTTTAAAAACTGCTCCAATCTGTGAAGTGCATCTTGACCTGGTACGAGTCACAACAGGACAAGTTTATAAATTGAGGACTCCCAGTAAACAATATTTGGCCTCCTTATCAACTTATGATTCTTCGAACCCAACCAAGGATTGGGGCTTCCCAGAATTATCAGACAACAGAGAAGTCCTTCCGCACGCTAAATCCAGCGTAAGAGGTGATTCCAAAACTGCGGATGTAATGGCATTCAGCAGGGGTTCATCGTCGTTGCCAGACGCAGCACATGAAAAGCTTGAAAGCTATCAATATAGGGATAGAGCTGCTGATAGAAGAGCCTTGTATGGTGGTTTTGGTGTGGGTCCAGGACAGAAGAATTCAGTAGATGGTGATAGTGATCGGCCAACACCCTCCACAGAGGAGGCTGCAGCAGAGGCCTTGAATATGTCATTTGGAGCTGGAAGTTACGCCCGGAAAGTTTTAGAAAGCATGGGCTGGAAGGAGGGGGAGACGCTTGGCAAGACTACAAAGGGATTGGTTGAACCTATTCAAGCACAAGGCAACATTGGTAGTGCTGGATTAGGGTGGCCTCGGGGAAGATTAAACCATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

445

Amino Acids

48.75

Weight (kDa)

4.68

Isoelectric Point (pI)

42.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OCRE PF17780 18 - 58 2.8e-08 OCRE domain
G-patch PF01585 397 - 436 2.7e-11 G-patch domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 807
Acc65I GGTACC 1 cut(s) 661
AccB1I GGYRCC 2 cut(s) 242, 661
AccB7I CCANNNNNTGG 1 cut(s) 879
AccII CGCG 1 cut(s) 150
AciI CCGC 2 cut(s) 920, 959
AcoI YGGCCR 2 cut(s) 232, 1124
AcsI RAATTY 2 cut(s) 55, 1099
AfaI GTAC 6 cut(s) 103, 137, 401, 417, 663, 783
AfiI CCNNNNNNNGG 6 cut(s) 49, 66, 128, 731, 874, 879
AgsI TTSAA 6 cut(s) 338, 569, 1022, 1165, 1265, 1274
AhdI GACNNNNNGTC 1 cut(s) 76
AjnI CCWGG 3 cut(s) 204, 777, 1087
AloI GAACNNNNNNTCC 2 cut(s) 171, 203
AluBI AGCT 9 cut(s) 85, 281, 445, 548, 709, 1018, 1026, 1046, 1181
AluI AGCT 9 cut(s) 85, 281, 445, 548, 709, 1018, 1026, 1046, 1181
Alw21I GWGCWC 2 cut(s) 447, 550
Alw26I GTCTC 3 cut(s) 84, 511, 1226
Ama87I CYCGRG 1 cut(s) 1314
AoxI GGCC 7 cut(s) 154, 232, 668, 837, 1124, 1158, 1310
ApeKI GCWGC 4 cut(s) 1004, 1046, 1148, 1151
ApoI RAATTY 2 cut(s) 55, 1099
Asp700I GAANNNNTTC 2 cut(s) 915, 1269
Asp718I GGTACC 1 cut(s) 661
AspS9I GGNCC 1 cut(s) 1085
AsuC2I CCSGG 3 cut(s) 50, 590, 1195
AsuHPI GGTGA 4 cut(s) 194, 392, 956, 1124
AsuII TTCGAA 2 cut(s) 171, 863
AvaI CYCGRG 1 cut(s) 1314
AvaII GGWCC 1 cut(s) 1085
BaeI ACNNNNGTAYC 2 cut(s) 399, 432
BalI TGGCCA 1 cut(s) 234
BanI GGYRCC 2 cut(s) 242, 661
BanII GRGCYC 3 cut(s) 273, 447, 550
BauI CACGAG 1 cut(s) 440
BbsI GAAGAC 2 cut(s) 477, 588
Bbv12I GWGCWC 2 cut(s) 447, 550
BbvI GCAGC 4 cut(s) 1016, 1033, 1135, 1163
BccI CCATC 5 cut(s) 170, 416, 428, 641, 1103
BceAI ACGGC 2 cut(s) 169, 709
BciT130I CCWGG 3 cut(s) 206, 779, 1089
BciVI GTATCC 1 cut(s) 319
BclI TGATCA 1 cut(s) 382
BcnI CCSGG 3 cut(s) 50, 590, 1195
BcoDI GTCTC 3 cut(s) 84, 511, 1226
BfaI CTAG 1 cut(s) 320
BfmI CTRYAG 3 cut(s) 139, 282, 1149
BfuI GTATCC 1 cut(s) 319
BisI GCNGC 4 cut(s) 1005, 1047, 1149, 1152
BlpI GCTNAGC 1 cut(s) 705
BlsI GCNGC 4 cut(s) 1006, 1048, 1150, 1153
Bme1390I CCNGG 6 cut(s) 50, 206, 590, 779, 1089, 1195
Bme18I GGWCC 1 cut(s) 1085
BmeRI GACNNNNNGTC 1 cut(s) 76
BmeT110I CYCGRG 1 cut(s) 1314
BmgT120I GGNCC 1 cut(s) 1085
BmiI GGNNCC 3 cut(s) 244, 663, 1086
BmrFI CCNGG 6 cut(s) 50, 206, 590, 779, 1089, 1195
BmrI ACTGGG 3 cut(s) 252, 628, 816
BmsI GCATC 2 cut(s) 562, 778
BmuI ACTGGG 3 cut(s) 252, 628, 816
BpiI GAAGAC 2 cut(s) 477, 588
Bpu1102I GCTNAGC 1 cut(s) 705
Bpu14I TTCGAA 2 cut(s) 171, 863
BpuMI CCSGG 3 cut(s) 50, 590, 1195
BsaBI GATNNNNATC 1 cut(s) 1119
BsaJI CCNNGG 5 cut(s) 205, 665, 671, 873, 1313
BsaWI WCCGGW 2 cut(s) 26, 104
Bsc4I CCNNNNNNNGG 6 cut(s) 49, 66, 128, 731, 874, 879
Bse118I RCCGGY 1 cut(s) 128
Bse1I ACTGG 6 cut(s) 99, 225, 258, 545, 623, 822
Bse8I GATNNNNATC 1 cut(s) 1119
BseBI CCWGG 3 cut(s) 206, 779, 1089
BseDI CCNNGG 5 cut(s) 205, 665, 671, 873, 1313
BseGI GGATG 3 cut(s) 535, 712, 967
BseJI GATNNNNATC 1 cut(s) 1119
BseLI CCNNNNNNNGG 6 cut(s) 49, 66, 128, 731, 874, 879
BseMII CTCAG 3 cut(s) 95, 240, 563
BseNI ACTGG 6 cut(s) 99, 225, 258, 545, 623, 822
BseRI GAGGAG 1 cut(s) 1157
BseXI GCAGC 4 cut(s) 1016, 1033, 1135, 1163
BsgI GTGCAG 1 cut(s) 319
Bsh1236I CGCG 1 cut(s) 150
BshFI GGCC 7 cut(s) 156, 234, 670, 839, 1126, 1160, 1312
BshNI GGYRCC 2 cut(s) 242, 661
BsiHKAI GWGCWC 2 cut(s) 447, 550
BsiHKCI CYCGRG 1 cut(s) 1314
BsiSI CCGG 6 cut(s) 27, 50, 105, 129, 590, 1195
BslFI GGGAC 2 cut(s) 83, 629
BslI CCNNNNNNNGG 6 cut(s) 49, 66, 128, 731, 874, 879
BsmAI GTCTC 3 cut(s) 84, 511, 1226
BsmBI CGTCTC 1 cut(s) 1226
BsmFI GGGAC 2 cut(s) 83, 629
BsmI GAATGC 1 cut(s) 971
BsnI GGCC 7 cut(s) 156, 234, 670, 839, 1126, 1160, 1312
BsoBI CYCGRG 1 cut(s) 1314
Bsp119I TTCGAA 2 cut(s) 171, 863
Bsp1286I GDGCHC 3 cut(s) 273, 447, 550
Bsp143I GATC 2 cut(s) 382, 1120
Bsp1720I GCTNAGC 1 cut(s) 705
Bsp68I TCGCGA 1 cut(s) 150
BspACI CCGC 2 cut(s) 920, 959
BspANI GGCC 7 cut(s) 156, 234, 670, 839, 1126, 1160, 1312
BspCNI CTCAG 3 cut(s) 94, 241, 562
BspFNI CGCG 1 cut(s) 150
BspHI TCATGA 1 cut(s) 385
BspLI GGNNCC 3 cut(s) 244, 663, 1086
BspMAI CTGCAG 1 cut(s) 1153
BspQI GCTCTTC 2 cut(s) 261, 1051
BspT104I TTCGAA 2 cut(s) 171, 863
BspT107I GGYRCC 2 cut(s) 242, 661
BsrFI RCCGGY 1 cut(s) 128
BsrI ACTGG 6 cut(s) 99, 225, 258, 545, 623, 822
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 5 cut(s) 205, 665, 671, 873, 1313
BssMI GATC 2 cut(s) 382, 1120
BssSI CACGAG 1 cut(s) 440
BssT1I CCWWGG 3 cut(s) 665, 671, 873
Bst2BI CACGAG 1 cut(s) 440
Bst2UI CCWGG 3 cut(s) 206, 779, 1089
Bst4CI ACNGT 1 cut(s) 78
Bst6I CTCTTC 3 cut(s) 261, 528, 1051
BstBI TTCGAA 2 cut(s) 171, 863
BstC8I GCNNGC 3 cut(s) 130, 546, 924
BstDEI CTNAG 5 cut(s) 81, 249, 364, 549, 705
BstF5I GGATG 3 cut(s) 535, 712, 967
BstFNI CGCG 1 cut(s) 150
BstKTI GATC 2 cut(s) 385, 1123
BstMAI GTCTC 3 cut(s) 84, 511, 1226
BstMBI GATC 2 cut(s) 382, 1120
BstMWI GCNNNNNNNGC 1 cut(s) 1157
BstNI CCWGG 3 cut(s) 206, 779, 1089
BstSCI CCNGG 6 cut(s) 48, 204, 588, 777, 1087, 1193
BstSFI CTRYAG 3 cut(s) 139, 282, 1149
BstUI CGCG 1 cut(s) 150
BstV1I GCAGC 4 cut(s) 1016, 1033, 1135, 1163
BstV2I GAAGAC 2 cut(s) 477, 588
BsuI GTATCC 1 cut(s) 319
BsuRI GGCC 7 cut(s) 156, 234, 670, 839, 1126, 1160, 1312
BtsCI GGATG 3 cut(s) 535, 712, 967
BtsI GCAGTG 2 cut(s) 313, 402
BtsIMutI CAGTG 4 cut(s) 246, 313, 402, 599
BtuMI TCGCGA 1 cut(s) 150
Cac8I GCNNGC 3 cut(s) 130, 546, 924
CciI TCATGA 1 cut(s) 385
Cfr10I RCCGGY 1 cut(s) 128
Cfr13I GGNCC 1 cut(s) 1085
CseI GACGC 2 cut(s) 1010, 1243
CsiI ACCWGGT 1 cut(s) 777
Csp6I GTAC 6 cut(s) 102, 136, 400, 416, 662, 782
CviAII CATG 7 cut(s) 95, 116, 230, 386, 525, 1010, 1213
CviQI GTAC 6 cut(s) 102, 136, 400, 416, 662, 782
DdeI CTNAG 5 cut(s) 81, 249, 364, 549, 705
DpnI GATC 2 cut(s) 384, 1122
DpnII GATC 2 cut(s) 382, 1120
DraI TTTAAA 1 cut(s) 744
DriI GACNNNNNGTC 1 cut(s) 76
EaeI YGGCCR 2 cut(s) 232, 1124
Eam1104I CTCTTC 3 cut(s) 261, 528, 1051
Eam1105I GACNNNNNGTC 1 cut(s) 76
EarI CTCTTC 3 cut(s) 261, 528, 1051
Ecl136II GAGCTC 2 cut(s) 445, 548
Eco130I CCWWGG 3 cut(s) 665, 671, 873
Eco147I AGGCCT 1 cut(s) 1160
Eco24I GRGCYC 3 cut(s) 273, 447, 550
Eco47I GGWCC 1 cut(s) 1085
Eco53kI GAGCTC 2 cut(s) 445, 548
Eco88I CYCGRG 1 cut(s) 1314
EcoICRI GAGCTC 2 cut(s) 445, 548
EcoRI GAATTC 1 cut(s) 1099
EcoRII CCWGG 3 cut(s) 204, 777, 1087
EcoT14I CCWWGG 3 cut(s) 665, 671, 873
EcoT38I GRGCYC 3 cut(s) 273, 447, 550
ErhI CCWWGG 3 cut(s) 665, 671, 873
Esp3I CGTCTC 1 cut(s) 1226
FaeI CATG 7 cut(s) 98, 119, 233, 389, 528, 1013, 1216
FalI AAGNNNNNCTT 2 cut(s) 756, 788
FaqI GGGAC 2 cut(s) 83, 629
FatI CATG 7 cut(s) 94, 115, 229, 385, 524, 1009, 1212
FbaI TGATCA 1 cut(s) 382
Fnu4HI GCNGC 4 cut(s) 1005, 1047, 1149, 1152
FokI GGATG 3 cut(s) 542, 699, 974
FriOI GRGCYC 3 cut(s) 273, 447, 550
Fsp4HI GCNGC 4 cut(s) 1005, 1047, 1149, 1152
FspBI CTAG 1 cut(s) 320
GluI GCNGC 4 cut(s) 1005, 1047, 1149, 1152
HaeIII GGCC 7 cut(s) 156, 234, 670, 839, 1126, 1160, 1312
HapII CCGG 6 cut(s) 27, 50, 105, 129, 590, 1195
HgaI GACGC 2 cut(s) 1010, 1243
Hin1II CATG 7 cut(s) 98, 119, 233, 389, 528, 1013, 1216
HindIII AAGCTT 2 cut(s) 707, 1016
HpaII CCGG 6 cut(s) 27, 50, 105, 129, 590, 1195
HphI GGTGA 4 cut(s) 194, 392, 956, 1124
Hpy166II GTNNAC 2 cut(s) 400, 827
Hpy188I TCNGA 3 cut(s) 18, 511, 901
Hpy188III TCNNGA 7 cut(s) 149, 263, 386, 440, 467, 569, 773
Hpy8I GTNNAC 2 cut(s) 400, 827
Hpy99I CGWCG 2 cut(s) 155, 994
HpyAV CCTTC 5 cut(s) 70, 509, 726, 926, 1216
HpyCH4III ACNGT 1 cut(s) 78
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 4 cut(s) 300, 575, 769, 1151
HpyF10VI GCNNNNNNNGC 1 cut(s) 1157
HpyF3I CTNAG 5 cut(s) 81, 249, 364, 549, 705
HpySE526I ACGT 1 cut(s) 186
Hsp92II CATG 7 cut(s) 98, 119, 233, 389, 528, 1013, 1216
KpnI GGTACC 1 cut(s) 665
KroI GCCGGC 1 cut(s) 128
KroNI GCCGGC 1 cut(s) 130
Ksp22I TGATCA 1 cut(s) 382
Kzo9I GATC 2 cut(s) 382, 1120
LguI GCTCTTC 2 cut(s) 261, 1051
LmnI GCTCC 2 cut(s) 757, 1178
Lsp1109I GCAGC 4 cut(s) 1016, 1033, 1135, 1163
LweI GCATC 2 cut(s) 562, 778
MabI ACCWGGT 1 cut(s) 777
MaeI CTAG 1 cut(s) 320
MaeII ACGT 1 cut(s) 186
MaeIII GTNAC 4 cut(s) 437, 628, 787, 1187
MalI GATC 2 cut(s) 384, 1122
MboI GATC 2 cut(s) 382, 1120
MhlI GDGCHC 3 cut(s) 273, 447, 550
MlsI TGGCCA 1 cut(s) 234
MluCI AATT 6 cut(s) 55, 462, 486, 809, 893, 1099
MluNI TGGCCA 1 cut(s) 234
MlyI GAGTC 6 cut(s) 22, 32, 500, 602, 795, 811
MmeI TCCRAC 1 cut(s) 384
Mox20I TGGCCA 1 cut(s) 234
MroNI GCCGGC 1 cut(s) 128
MroXI GAANNNNTTC 2 cut(s) 915, 1269
MscI TGGCCA 1 cut(s) 234
MseI TTAA 2 cut(s) 743, 1325
Msp20I TGGCCA 1 cut(s) 234
MspA1I CMGCKG 1 cut(s) 281
MspI CCGG 6 cut(s) 27, 50, 105, 129, 590, 1195
MspR9I CCNGG 6 cut(s) 50, 206, 590, 779, 1089, 1195
Mva1269I GAATGC 1 cut(s) 971
MvaI CCWGG 3 cut(s) 206, 779, 1089
MvnI CGCG 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 1157
NaeI GCCGGC 1 cut(s) 130
NciI CCSGG 3 cut(s) 50, 590, 1195
NdeII GATC 2 cut(s) 382, 1120
NgoMIV GCCGGC 1 cut(s) 128
NlaIII CATG 7 cut(s) 98, 119, 233, 389, 528, 1013, 1216
NlaIV GGNNCC 3 cut(s) 244, 663, 1086
NmuCI GTSAC 3 cut(s) 437, 628, 787
NruI TCGCGA 1 cut(s) 150
NspV TTCGAA 2 cut(s) 171, 863
PagI TCATGA 1 cut(s) 385
PceI AGGCCT 1 cut(s) 1160
PciSI GCTCTTC 2 cut(s) 261, 1051
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PctI GAATGC 1 cut(s) 971
PdiI GCCGGC 1 cut(s) 130
PdmI GAANNNNTTC 2 cut(s) 915, 1269
PfeI GAWTC 5 cut(s) 108, 253, 452, 857, 947
PflMI CCANNNNNTGG 1 cut(s) 879
PfoI TCCNGGA 2 cut(s) 588, 1087
PkrI GCNGC 4 cut(s) 1006, 1048, 1150, 1153
PleI GAGTC 6 cut(s) 21, 32, 499, 601, 794, 811
PpsI GAGTC 6 cut(s) 21, 32, 499, 601, 794, 811
PsiI TTATAA 1 cut(s) 807
Psp124BI GAGCTC 2 cut(s) 447, 550
Psp6I CCWGG 3 cut(s) 204, 777, 1087
PspGI CCWGG 3 cut(s) 204, 777, 1087
PspN4I GGNNCC 3 cut(s) 244, 663, 1086
PspPI GGNCC 1 cut(s) 1085
PstI CTGCAG 1 cut(s) 1153
PvuII CAGCTG 1 cut(s) 281
RruI TCGCGA 1 cut(s) 150
RsaI GTAC 6 cut(s) 103, 137, 401, 417, 663, 783
RsaNI GTAC 6 cut(s) 102, 136, 400, 416, 662, 782
SacI GAGCTC 2 cut(s) 447, 550
SapI GCTCTTC 2 cut(s) 261, 1051
SaqAI TTAA 2 cut(s) 743, 1325
SatI GCNGC 4 cut(s) 1005, 1047, 1149, 1152
Sau3AI GATC 2 cut(s) 382, 1120
Sau96I GGNCC 1 cut(s) 1085
SchI GAGTC 6 cut(s) 22, 32, 500, 602, 795, 811
ScrFI CCNGG 6 cut(s) 50, 206, 590, 779, 1089, 1195
SduI GDGCHC 3 cut(s) 273, 447, 550
SexAI ACCWGGT 1 cut(s) 777
SfaNI GCATC 2 cut(s) 562, 778
SfcI CTRYAG 3 cut(s) 139, 282, 1149
SfuI TTCGAA 2 cut(s) 171, 863
SinI GGWCC 1 cut(s) 1085
Sse9I AATT 6 cut(s) 55, 462, 486, 809, 893, 1099
SseBI AGGCCT 1 cut(s) 1160
SsiI CCGC 2 cut(s) 920, 959
SspI AATATT 1 cut(s) 833
SspMI CTAG 1 cut(s) 320
SstI GAGCTC 2 cut(s) 447, 550
StuI AGGCCT 1 cut(s) 1160
StyD4I CCNGG 6 cut(s) 48, 204, 588, 777, 1087, 1193
StyI CCWWGG 3 cut(s) 665, 671, 873
TaaI ACNGT 1 cut(s) 78
TaiI ACGT 1 cut(s) 189
TaqI TCGA 3 cut(s) 171, 494, 863
TasI AATT 6 cut(s) 55, 462, 486, 809, 893, 1099
TfiI GAWTC 5 cut(s) 108, 253, 452, 857, 947
Tru1I TTAA 2 cut(s) 743, 1325
Tru9I TTAA 2 cut(s) 743, 1325
TscAI CASTG 4 cut(s) 253, 313, 402, 606
TseFI GTSAC 3 cut(s) 437, 628, 787
TseI GCWGC 4 cut(s) 1004, 1046, 1148, 1151
Tsp45I GTSAC 3 cut(s) 437, 628, 787
TspRI CASTG 4 cut(s) 253, 313, 402, 606
Van91I CCANNNNNTGG 1 cut(s) 879
VpaK11BI GGWCC 1 cut(s) 1085
XapI RAATTY 2 cut(s) 55, 1099
XcmI CCANNNNNNNNNTGG 1 cut(s) 876
XmnI GAANNNNTTC 2 cut(s) 915, 1269
XspI CTAG 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.