Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001488

Physical Location & Seq

Genomic Coordinates Forward (+)

21349383 .. 21353193

Gene Structure 3811 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G57650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGTGATTGCTGCAGCTGTCATCGTGCCTTTGGGCCTTCTCTTCTTCATATCTGGTCTCGCTGTCAATCTCTTTCAGGCAGTTTGCTATGTACTCATTCGACCACTGTCTAAGAACACATACAGAAAAATTAACCGGGTGGTTGCAGAAACCTTGTGGTTGGAGCTTGTATGGATAGTTGACTGGTGGGCTGGAGTTAAGATCCAAGTGTTTGCTGATAATGAGACCTTCAATCGAATGGGCAAAGAACATGCTCTTGTCGTTTGTAATCACCGAAGTGATATTGATTGGCTTGTGGGATGGATTCTGGCTCAGCGGTCAGGTTGCCTGGGAAGCGCATTAGCTGTAATGAAGAAGTCTTCCAAATTCCTTCCAGTCATAGGCTGGTCAATGTGGTTCTCGGAGTATCTCTTTCTGGAAAGAAATTGGGCCAAGGATGAAAGCACTCTAAAGTCAGGTCTTCAGCGCTTGAGCGACTTCCCTCGACCTTTCTGGTTAGCCCTTTTTGTGGAGGGAACTCGCTTTACAGAAGCCAAACTTAAAGCCGCACAAGAGTATGCAGCCTCCTCTGAATTGCCTATCCCTCGAAATGTGTTGATTCCTCGCACCAAAGGTTTCGTGTCAGCTGTTAGTAATATGCGTTCATTTGTCCCAGCAATTTATGATATGACAGTGACTATTCCAAAAACCTCTCCACCACCCACGATGCTAAGACTATTCAAAGGACAACCTTCAGTGGTGCATGTTCACATCAAGTGTCACTCGATGAAAGACTTACCTGAATCAGATGACGCAATTGCACAGTGGTGCAGAGATCAGTTTGTGGCTAAGGATGCTCTGTTAGACAAACACATAGCTGCAGACACTTTCCCCGGTCAACAAGAACAGAACATTGGCCGTCCCATAAAGTCCCTTGCGGTGGTTCTATCATGGGCATGCGTACTAACTCTTGGAGCAATAAAGTTCCTACACTGGGCACAACTCTTTTCTTCATGGAAAGGTATCACGATATCGGCGCTTGGTCTAGGTATCATCACTCTCTGTATGCAGATCCTGATACGCTCGTCTCAGTCAGAGCGTTCGACCCCAGCCAAAGTCGTCCCAGCCAAGCCAAAAGACAATCACCACCCAGAATCATCCTCCCAAACAGAAACGGAGAAGGAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003841 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008374 GO:0012505 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0042171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071617

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04072 map00561 map00564 map01100 map01110 map04072

Pfam Domains

Protein Families

Acyltransf_C Acyltransferase

Protein Analysis

389

Amino Acids

43.68

Weight (kDa)

9.31

Isoelectric Point (pI)

41.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyltransferase	PF01553	77 - 225	2.3e-15	Acyltransferase
Acyltransf_C	PF16076	238 - 311	5.7e-25	Acyltransferase C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57650
fragaria_vesca	FvH4_6g23240 FvH4_6g23240 FvH4_6g23240 FvH4_6g36950 FvH4_6g36960 FvH4_6g36962
malus_domestica	MD12G1066700.v1.1 MD14G1067300.v1.1
prunus_persica	Prupe.7G067600_v2.0.a1
pyrus_communis	pycom12g05810 pycom14g05530
rosa_chinensis	RchiOBHm_Chr2g0149391 RchiOBHm_Chr2g0149421 RchiOBHm_Chr2g0149441 RchiOBHm_Chr2g0149461 RchiOBHm_Chr2g0149471 RchiOBHm_Chr3g0481071
rosa_laevigata	RLG00000020324 RLG00000020404 RLG00000020406 RLG00000020407 RLG00000023423
rosa_multiflora	Rmu_co8437371.1_g000001 Rmu_sc0000873.1_g000022 Rmu_sc0000873.1_g000026 Rmu_sc0000873.1_g000027 Rmu_sc0000873.1_g000029 Rmu_sc0001551.1_g000024 Rmu_sc0002187.1_g000054
rosa_roxburghii	Rroxscaffold_2G00098120 Rroxscaffold_2G00098130 Rroxscaffold_6G00400660
rosa_rugosa	Rorug03G0190000 Rorug03G0190100 Rorug04G0357400 Rorug04G0357500 Rorug04G0357600
rosa_samantha	Rh3AG240300 Rh3BG276000 Rh3CG271300 Rh3DG267300 Rh5BG363100
rosa_wichuraiana	Rw2G038400 Rw2G038410 Rw2G038420 Rw2G038430 Rw2G038440 Rw2G038450 Rw3G021460 Rw6G011250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	316, 546, 917
AclWI	GGATC	2 cut(s)	196, 1045
AcoI	YGGCCR	1 cut(s)	895
AcsI	RAATTY	1 cut(s)	365
AcuI	CTGAAG	2 cut(s)	446, 717
AfaI	GTAC	2 cut(s)	93, 942
AfeI	AGCGCT	1 cut(s)	467
AfiI	CCNNNNNNNGG	4 cut(s)	380, 508, 919, 973
AgsI	TTSAA	2 cut(s)	232, 721
AjnI	CCWGG	1 cut(s)	327
AjuI	GAANNNNNNNTTGG	2 cut(s)	876, 908
AleI	CACNNNNGTG	2 cut(s)	276, 805
AluBI	AGCT	5 cut(s)	17, 166, 344, 626, 857
AluI	AGCT	5 cut(s)	17, 166, 344, 626, 857
Alw26I	GTCTC	3 cut(s)	62, 218, 1071
AlwI	GGATC	2 cut(s)	196, 1045
AlwNI	CAGNNNCTG	1 cut(s)	1054
Aor51HI	AGCGCT	1 cut(s)	467
AoxI	GGCC	3 cut(s)	34, 429, 895
ApeKI	GCWGC	4 cut(s)	11, 14, 560, 857
ApoI	RAATTY	1 cut(s)	365
AspLEI	GCGC	3 cut(s)	338, 468, 1018
AspS9I	GGNCC	2 cut(s)	34, 429
AsuC2I	CCSGG	2 cut(s)	137, 873
AsuHPI	GGTGA	3 cut(s)	16, 263, 1115
BaeGI	GKGCMC	1 cut(s)	979
BaeI	ACNNNNGTAYC	2 cut(s)	1049, 1082
BbsI	GAAGAC	2 cut(s)	351, 452
BbvI	GCAGC	3 cut(s)	26, 572, 844
BccI	CCATC	1 cut(s)	294
BceAI	ACGGC	1 cut(s)	882
BciT130I	CCWGG	1 cut(s)	329
BcnI	CCSGG	2 cut(s)	137, 873
BcoDI	GTCTC	3 cut(s)	62, 218, 1071
BfaI	CTAG	1 cut(s)	1025
BfmI	CTRYAG	2 cut(s)	12, 858
BfoI	RGCGCY	2 cut(s)	469, 1019
BisI	GCNGC	5 cut(s)	12, 15, 546, 561, 858
BlpI	GCTNAGC	1 cut(s)	312
BlsI	GCNGC	5 cut(s)	13, 16, 547, 562, 859
Bme1390I	CCNGG	3 cut(s)	137, 329, 873
BmgT120I	GGNCC	2 cut(s)	34, 429
BmrFI	CCNGG	3 cut(s)	137, 329, 873
BmrI	ACTGGG	1 cut(s)	982
BmsI	GCATC	2 cut(s)	696, 823
BmuI	ACTGGG	1 cut(s)	982
BoxI	GACNNNNGTC	1 cut(s)	106
BpiI	GAAGAC	2 cut(s)	351, 452
BpmI	CTGGAG	1 cut(s)	213
Bpu10I	CCTNAGC	1 cut(s)	828
Bpu1102I	GCTNAGC	1 cut(s)	312
BpuEI	CTTGAG	1 cut(s)	490
BpuMI	CCSGG	2 cut(s)	137, 873
BsaI	GGTCTC	2 cut(s)	62, 218
BsaJI	CCNNGG	3 cut(s)	328, 432, 871
Bsc4I	CCNNNNNNNGG	4 cut(s)	380, 508, 919, 973
Bse1I	ACTGG	3 cut(s)	188, 374, 977
BseBI	CCWGG	1 cut(s)	329
BseDI	CCNNGG	3 cut(s)	328, 432, 871
BseGI	GGATG	4 cut(s)	305, 442, 838, 1136
BseLI	CCNNNNNNNGG	4 cut(s)	380, 508, 919, 973
BseMII	CTCAG	2 cut(s)	326, 1082
BseNI	ACTGG	3 cut(s)	188, 374, 977
BseRI	GAGGAG	1 cut(s)	556
BseSI	GKGCMC	1 cut(s)	979
BseXI	GCAGC	3 cut(s)	26, 572, 844
BseYI	CCCAGC	3 cut(s)	652, 1087, 1102
BsgI	GTGCAG	1 cut(s)	829
BshFI	GGCC	3 cut(s)	36, 431, 897
BsiSI	CCGG	2 cut(s)	136, 873
BslFI	GGGAC	4 cut(s)	635, 885, 895, 1085
BslI	CCNNNNNNNGG	4 cut(s)	380, 508, 919, 973
BsmAI	GTCTC	3 cut(s)	62, 218, 1071
BsmBI	CGTCTC	1 cut(s)	1071
BsmFI	GGGAC	4 cut(s)	635, 885, 895, 1085
BsnI	GGCC	3 cut(s)	36, 431, 897
Bso31I	GGTCTC	2 cut(s)	62, 218
Bsp1286I	GDGCHC	1 cut(s)	979
Bsp143I	GATC	3 cut(s)	201, 814, 1050
Bsp1720I	GCTNAGC	1 cut(s)	312
BspACI	CCGC	3 cut(s)	316, 546, 917
BspANI	GGCC	3 cut(s)	36, 431, 897
BspCNI	CTCAG	2 cut(s)	325, 1081
BspMAI	CTGCAG	2 cut(s)	16, 862
BspPI	GGATC	2 cut(s)	196, 1045
BspTNI	GGTCTC	2 cut(s)	62, 218
BsrI	ACTGG	3 cut(s)	188, 374, 977
BssECI	CCNNGG	3 cut(s)	328, 432, 871
BssMI	GATC	3 cut(s)	201, 814, 1050
BssT1I	CCWWGG	1 cut(s)	432
Bst2UI	CCWGG	1 cut(s)	329
Bst4CI	ACNGT	3 cut(s)	108, 673, 804
Bst6I	CTCTTC	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	937
BstDEI	CTNAG	5 cut(s)	111, 312, 710, 828, 1068
BstF5I	GGATG	4 cut(s)	305, 442, 838, 1136
BstH2I	RGCGCY	2 cut(s)	469, 1019
BstHHI	GCGC	3 cut(s)	338, 468, 1018
BstKTI	GATC	3 cut(s)	204, 817, 1053
BstMAI	GTCTC	3 cut(s)	62, 218, 1071
BstMBI	GATC	3 cut(s)	201, 814, 1050
BstMWI	GCNNNNNNNGC	2 cut(s)	333, 833
BstNI	CCWGG	1 cut(s)	329
BstNSI	RCATGY	3 cut(s)	254, 746, 939
BstPAI	GACNNNNGTC	1 cut(s)	106
BstSCI	CCNGG	3 cut(s)	135, 327, 871
BstSFI	CTRYAG	2 cut(s)	12, 858
BstSLI	GKGCMC	1 cut(s)	979
BstV1I	GCAGC	3 cut(s)	26, 572, 844
BstV2I	GAAGAC	2 cut(s)	351, 452
BstX2I	RGATCY	2 cut(s)	201, 1050
BstYI	RGATCY	2 cut(s)	201, 1050
BsuRI	GGCC	3 cut(s)	36, 431, 897
BtsCI	GGATG	4 cut(s)	305, 442, 838, 1136
BtsIMutI	CAGTG	5 cut(s)	104, 678, 741, 809, 970
Cac8I	GCNNGC	1 cut(s)	937
CaiI	CAGNNNCTG	1 cut(s)	1054
CfoI	GCGC	3 cut(s)	338, 468, 1018
Cfr13I	GGNCC	2 cut(s)	34, 429
CseI	GACGC	1 cut(s)	800
Csp6I	GTAC	2 cut(s)	92, 941
CviAII	CATG	5 cut(s)	251, 743, 930, 936, 993
CviQI	GTAC	2 cut(s)	92, 941
DdeI	CTNAG	5 cut(s)	111, 312, 710, 828, 1068
DpnI	GATC	3 cut(s)	203, 816, 1052
DpnII	GATC	3 cut(s)	201, 814, 1050
EaeI	YGGCCR	1 cut(s)	895
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
Eco130I	CCWWGG	1 cut(s)	432
Eco31I	GGTCTC	2 cut(s)	62, 218
Eco32I	GATATC	1 cut(s)	1011
Eco47III	AGCGCT	1 cut(s)	467
Eco57I	CTGAAG	2 cut(s)	446, 717
EcoRII	CCWGG	1 cut(s)	327
EcoRV	GATATC	1 cut(s)	1011
EcoT14I	CCWWGG	1 cut(s)	432
ErhI	CCWWGG	1 cut(s)	432
Esp3I	CGTCTC	1 cut(s)	1071
FaeI	CATG	5 cut(s)	254, 746, 933, 939, 996
FalI	AAGNNNNNCTT	2 cut(s)	522, 554
FaqI	GGGAC	4 cut(s)	635, 885, 895, 1085
FatI	CATG	5 cut(s)	250, 742, 929, 935, 992
Fnu4HI	GCNGC	5 cut(s)	12, 15, 546, 561, 858
FokI	GGATG	4 cut(s)	312, 449, 845, 1123
Fsp4HI	GCNGC	5 cut(s)	12, 15, 546, 561, 858
FspBI	CTAG	1 cut(s)	1025
GlaI	GCGC	3 cut(s)	337, 467, 1017
GluI	GCNGC	5 cut(s)	12, 15, 546, 561, 858
GsaI	CCCAGC	3 cut(s)	656, 1091, 1106
GsuI	CTGGAG	1 cut(s)	213
HaeII	RGCGCY	2 cut(s)	469, 1019
HaeIII	GGCC	3 cut(s)	36, 431, 897
HapII	CCGG	2 cut(s)	136, 873
HgaI	GACGC	1 cut(s)	800
HhaI	GCGC	3 cut(s)	338, 468, 1018
Hin1II	CATG	5 cut(s)	254, 746, 933, 939, 996
Hin6I	GCGC	3 cut(s)	336, 466, 1016
HinP1I	GCGC	3 cut(s)	336, 466, 1016
HincII	GTYRAC	2 cut(s)	181, 878
HindII	GTYRAC	2 cut(s)	181, 878
HinfI	GANTC	4 cut(s)	304, 598, 782, 1133
HpaII	CCGG	2 cut(s)	136, 873
HphI	GGTGA	3 cut(s)	16, 263, 1115
Hpy166II	GTNNAC	3 cut(s)	181, 748, 878
Hpy188I	TCNGA	4 cut(s)	403, 571, 787, 1075
Hpy188III	TCNNGA	3 cut(s)	416, 1006, 1054
Hpy8I	GTNNAC	3 cut(s)	181, 748, 878
HpyAV	CCTTC	5 cut(s)	47, 238, 380, 741, 1153
HpyCH4III	ACNGT	3 cut(s)	108, 673, 804
HpyCH4V	TGCA	8 cut(s)	14, 146, 560, 742, 800, 810, 860, 1048
HpyF10VI	GCNNNNNNNGC	2 cut(s)	333, 833
HpyF3I	CTNAG	5 cut(s)	111, 312, 710, 828, 1068
Hsp92II	CATG	5 cut(s)	254, 746, 933, 939, 996
HspAI	GCGC	3 cut(s)	336, 466, 1016
Kzo9I	GATC	3 cut(s)	201, 814, 1050
LmnI	GCTCC	2 cut(s)	163, 953
Lsp1109I	GCAGC	3 cut(s)	26, 572, 844
LweI	GCATC	2 cut(s)	696, 823
MaeI	CTAG	1 cut(s)	1025
MaeIII	GTNAC	2 cut(s)	673, 758
MalI	GATC	3 cut(s)	203, 816, 1052
MboI	GATC	3 cut(s)	201, 814, 1050
MboII	GAAGA	6 cut(s)	34, 37, 351, 364, 452, 981
MfeI	CAATTG	1 cut(s)	795
MflI	RGATCY	2 cut(s)	201, 1050
MhlI	GDGCHC	1 cut(s)	979
MluCI	AATT	6 cut(s)	129, 365, 424, 572, 657, 795
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	8 cut(s)	492, 505, 574, 577, 594, 612, 700, 1150
MseI	TTAA	3 cut(s)	132, 198, 540
MslI	CAYNNNNRTG	3 cut(s)	276, 805, 934
MspA1I	CMGCKG	3 cut(s)	17, 316, 626
MspI	CCGG	2 cut(s)	136, 873
MspR9I	CCNGG	3 cut(s)	137, 329, 873
MunI	CAATTG	1 cut(s)	795
MvaI	CCWGG	1 cut(s)	329
MwoI	GCNNNNNNNGC	2 cut(s)	333, 833
NciI	CCSGG	2 cut(s)	137, 873
NdeII	GATC	3 cut(s)	201, 814, 1050
NlaIII	CATG	5 cut(s)	254, 746, 933, 939, 996
NmuCI	GTSAC	2 cut(s)	673, 758
NspI	RCATGY	3 cut(s)	254, 746, 939
OliI	CACNNNNGTG	2 cut(s)	276, 805
PaeI	GCATGC	1 cut(s)	939
PfeI	GAWTC	4 cut(s)	304, 598, 782, 1133
PkrI	GCNGC	5 cut(s)	13, 16, 547, 562, 859
PshAI	GACNNNNGTC	1 cut(s)	106
Psp6I	CCWGG	1 cut(s)	327
PspFI	CCCAGC	3 cut(s)	652, 1087, 1102
PspGI	CCWGG	1 cut(s)	327
PspPI	GGNCC	2 cut(s)	34, 429
PsrI	GAACNNNNNNTAC	4 cut(s)	508, 540, 625, 657
PstI	CTGCAG	2 cut(s)	16, 862
PstNI	CAGNNNCTG	1 cut(s)	1054
PsuI	RGATCY	2 cut(s)	201, 1050
PvuII	CAGCTG	2 cut(s)	17, 626
RsaI	GTAC	2 cut(s)	93, 942
RsaNI	GTAC	2 cut(s)	92, 941
RseI	CAYNNNNRTG	3 cut(s)	276, 805, 934
SaqAI	TTAA	3 cut(s)	132, 198, 540
SatI	GCNGC	5 cut(s)	12, 15, 546, 561, 858
Sau3AI	GATC	3 cut(s)	201, 814, 1050
Sau96I	GGNCC	2 cut(s)	34, 429
ScrFI	CCNGG	3 cut(s)	137, 329, 873
SduI	GDGCHC	1 cut(s)	979
SfaNI	GCATC	2 cut(s)	696, 823
SfcI	CTRYAG	2 cut(s)	12, 858
SmiMI	CAYNNNNRTG	3 cut(s)	276, 805, 934
SmlI	CTYRAG	1 cut(s)	469
SmoI	CTYRAG	1 cut(s)	469
SphI	GCATGC	1 cut(s)	939
Sse9I	AATT	6 cut(s)	129, 365, 424, 572, 657, 795
SsiI	CCGC	3 cut(s)	316, 546, 917
SspMI	CTAG	1 cut(s)	1025
StyD4I	CCNGG	3 cut(s)	135, 327, 871
StyI	CCWWGG	1 cut(s)	432
TaaI	ACNGT	3 cut(s)	108, 673, 804
TaqI	TCGA	6 cut(s)	100, 235, 484, 586, 764, 1082
TasI	AATT	6 cut(s)	129, 365, 424, 572, 657, 795
TatI	WGTACW	1 cut(s)	91
TauI	GCSGC	1 cut(s)	548
TfiI	GAWTC	4 cut(s)	304, 598, 782, 1133
Tru1I	TTAA	3 cut(s)	132, 198, 540
Tru9I	TTAA	3 cut(s)	132, 198, 540
TscAI	CASTG	5 cut(s)	111, 678, 741, 809, 977
TseFI	GTSAC	2 cut(s)	673, 758
TseI	GCWGC	4 cut(s)	11, 14, 560, 857
Tsp45I	GTSAC	2 cut(s)	673, 758
TspDTI	ATGAA	6 cut(s)	37, 365, 453, 633, 782, 981
TspGWI	ACGGA	1 cut(s)	1169
TspRI	CASTG	5 cut(s)	111, 678, 741, 809, 977
XapI	RAATTY	1 cut(s)	365
XceI	RCATGY	3 cut(s)	254, 746, 939
XcmI	CCANNNNNNNNNTGG	1 cut(s)	381
XspI	CTAG	1 cut(s)	1025

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.