Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001488

Physical Location & Seq

Genomic Coordinates Forward (+)

22732464 .. 22739063

Gene Structure 6600 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00400660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGCGATTGCAGCGGCAGCTGTCATCGTTCCACTCGGCCTCCCTCTTCTTCCTCTCTGGCCTCTTTGTCAATCTCCTTCAGGCTATTTGCTTCGTTTTTATTCGGCCTGTGTCGAAGAATATATACAGAAGAATCAACAACAGAGTGCTGGCAGAGCTGCTGTGGCTGGAGCTTGTTTGGATCATAGATTGGTGGGCAGGCGTCAAGACTTTGCTGCTATGCCCCACTTCTGTTTTGTATGTCGGGATGTGCAAAGAGTGATCAAAGTATACACAGACCCTGAAACCTTCCATTTAATGGGTAAAGAACATGCACTTGTCATATGCAATCACAAAAGTGATATTGATTGGCTTGTTGGATGGGTTCTAGCTCAGCGGTCAGGTTGCCTTGGCAGCTCATTAGCTGTAATGAAGAAATCATCCAAATTTCTTCCGTCAGGTATTCAACGGCTGAAGGACTACCCTCAGCCCTTTTGGTTGGCTCTTTTTGTAGAAGGAACTCGTTTTACACAGGCAAAGCTTTTGGCAGCACAGGAATATGCCGCCTCAACAGGGCTACCTGTCCCTAGAAATGTTTTGATTCCTCGCACTAAGGGTTTTGTCTCAGCAGTAAGTCACATGCGCTCATTTGTTCCAGCCGTATATGATATAACGGTGGCTATTCCTAAAAGTTCACCTGCACCTACAATGCTAAGACTGTTTGAGGGGCGACCGTCTGTGGTGCACGTGCACATCAAGAGGCATGTGATGAAGGACTTGCCTGAAACTGATGATGCTGTTGCACAATGGTGTAAGGAAGCATTTGTGGCCAAGGTGAACCACCTTTTTCGGTACCACCTGTCCCATCTTATGTGGGCAGTTGATGTGGCATCACCACATTGTTTAATGAATTGTTCTGATAGGTTGGACTTTGTGCTACATCAGCTGCCGCATAAGGATGCATTATTGGACAAACATGCAGTAGAGCAAACTTTTGGCGATCAAGAATTGCAAATTACTAGGCGGCCACTGAAGTCACTTTTGGTTGTTACATCTTGGGCATGTTTACTGGTTTTGGGGTCCCTAAAGTTCCTCTACTGGTCTTCACTTCTATCCTCGTGGAAGGGCATTGCATTCTCAGCATTGGGTTTGGGCATTGTTACCGTCCTCATGCAGATCTTGATTCGGTTTTCTCAGTCAGAGCATTCAACCCCTGCCAAAGTGGCTCCTGCAAAGCATAATAATGGAGAGGCTTCTGGCGAACCAACCAAACAGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003841 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008374 GO:0012505 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0042171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071617

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04072 map00561 map00564 map01100 map01110 map04072

Pfam Domains

Protein Families

Acyltransf_C Acyltransferase

Protein Analysis

419

Amino Acids

46.63

Weight (kDa)

9.26

Isoelectric Point (pI)

47.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyltransf_C	PF16076	232 - 279	2.5e-12	Acyltransferase C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57650
fragaria_vesca	FvH4_6g23240 FvH4_6g23240 FvH4_6g23240 FvH4_6g36950 FvH4_6g36960 FvH4_6g36962
malus_domestica	MD12G1066700.v1.1 MD14G1067300.v1.1
prunus_persica	Prupe.7G067600_v2.0.a1
pyrus_communis	pycom12g05810 pycom14g05530
rosa_chinensis	RchiOBHm_Chr2g0149391 RchiOBHm_Chr2g0149421 RchiOBHm_Chr2g0149441 RchiOBHm_Chr2g0149461 RchiOBHm_Chr2g0149471 RchiOBHm_Chr3g0481071
rosa_laevigata	RLG00000020324 RLG00000020404 RLG00000020406 RLG00000020407 RLG00000023423
rosa_multiflora	Rmu_co8437371.1_g000001 Rmu_sc0000873.1_g000022 Rmu_sc0000873.1_g000026 Rmu_sc0000873.1_g000027 Rmu_sc0000873.1_g000029 Rmu_sc0001551.1_g000024 Rmu_sc0002187.1_g000054
rosa_roxburghii	Rroxscaffold_2G00098120 Rroxscaffold_2G00098130 Rroxscaffold_6G00400660
rosa_rugosa	Rorug03G0190000 Rorug03G0190100 Rorug04G0357400 Rorug04G0357500 Rorug04G0357600
rosa_samantha	Rh3AG240300 Rh3BG276000 Rh3CG271300 Rh3DG267300 Rh5BG363100
rosa_wichuraiana	Rw2G038400 Rw2G038410 Rw2G038420 Rw2G038430 Rw2G038440 Rw2G038450 Rw3G021460 Rw6G011250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	685
Acc36I	ACCTGC	1 cut(s)	685
Acc65I	GGTACC	1 cut(s)	831
AccB1I	GGYRCC	1 cut(s)	831
AccB7I	CCANNNNNTGG	1 cut(s)	298
AccI	GTMKAC	1 cut(s)	270
AciI	CCGC	5 cut(s)	14, 376, 543, 929, 1003
AclWI	GGATC	1 cut(s)	189
AcoI	YGGCCR	2 cut(s)	807, 1004
AcsI	RAATTY	1 cut(s)	425
AcuI	CTGAAG	3 cut(s)	63, 473, 1031
AcvI	CACGTG	1 cut(s)	727
AcyI	GRCGYC	1 cut(s)	202
AfaI	GTAC	1 cut(s)	833
AfiI	CCNNNNNNNGG	2 cut(s)	298, 552
AgsI	TTSAA	2 cut(s)	446, 1188
AjuI	GAANNNNNNNTTGG	2 cut(s)	1004, 1036
AleI	CACNNNNGTG	2 cut(s)	336, 787
AluBI	AGCT	8 cut(s)	20, 158, 173, 371, 396, 404, 520, 925
AluI	AGCT	8 cut(s)	20, 158, 173, 371, 396, 404, 520, 925
Alw21I	GWGCWC	2 cut(s)	726, 732
Alw26I	GTCTC	1 cut(s)	607
Alw44I	GTGCAC	2 cut(s)	722, 728
AlwI	GGATC	1 cut(s)	189
AlwNI	CAGNNNCTG	1 cut(s)	281
AoxI	GGCC	5 cut(s)	37, 59, 105, 807, 1004
ApaLI	GTGCAC	2 cut(s)	722, 728
ApeKI	GCWGC	7 cut(s)	11, 17, 158, 215, 393, 527, 925
ApoI	RAATTY	1 cut(s)	425
Asp718I	GGTACC	1 cut(s)	831
AspLEI	GCGC	1 cut(s)	624
AspS9I	GGNCC	1 cut(s)	1059
AsuHPI	GGTGA	3 cut(s)	666, 826, 864
AvaII	GGWCC	1 cut(s)	1059
BaeGI	GKGCMC	2 cut(s)	726, 732
BalI	TGGCCA	1 cut(s)	809
BanI	GGYRCC	1 cut(s)	831
BarI	GAAGNNNNNNTAC	2 cut(s)	108, 140
BauI	CACGAG	1 cut(s)	1096
BbrPI	CACGTG	1 cut(s)	727
BbsI	GAAGAC	1 cut(s)	1074
Bbv12I	GWGCWC	2 cut(s)	726, 732
BbvCI	CCTCAGC	1 cut(s)	465
BbvI	GCAGC	7 cut(s)	23, 29, 145, 202, 405, 539, 912
BccI	CCATC	2 cut(s)	354, 852
BceAI	ACGGC	2 cut(s)	464, 623
BclI	TGATCA	1 cut(s)	261
BcoDI	GTCTC	1 cut(s)	607
BfaI	CTAG	3 cut(s)	368, 567, 999
BfuAI	ACCTGC	1 cut(s)	685
BglI	GCCNNNNNGGC	1 cut(s)	1202
BglII	AGATCT	1 cut(s)	1155
BlpI	GCTNAGC	1 cut(s)	372
Bme18I	GGWCC	1 cut(s)	1059
BmgT120I	GGNCC	1 cut(s)	1059
BmiI	GGNNCC	4 cut(s)	833, 1060, 1061, 1206
BmsI	GCATC	3 cut(s)	763, 878, 928
BpiI	GAAGAC	1 cut(s)	1074
BpmI	CTGGAG	1 cut(s)	189
Bpu10I	CCTNAGC	1 cut(s)	465
Bpu1102I	GCTNAGC	1 cut(s)	372
BsaAI	YACGTR	1 cut(s)	727
BsaHI	GRCGYC	1 cut(s)	202
BsaJI	CCNNGG	2 cut(s)	388, 810
BsaXI	ACNNNNNCTCC	2 cut(s)	24, 54
Bsc4I	CCNNNNNNNGG	2 cut(s)	298, 552
Bse1I	ACTGG	2 cut(s)	1053, 1082
Bse3DI	GCAATG	1 cut(s)	1107
BseDI	CCNNGG	2 cut(s)	388, 810
BseGI	GGATG	4 cut(s)	253, 365, 419, 943
BseLI	CCNNNNNNNGG	2 cut(s)	298, 552
BseMI	GCAATG	1 cut(s)	1107
BseMII	CTCAG	5 cut(s)	386, 479, 618, 1131, 1187
BseNI	ACTGG	2 cut(s)	1053, 1082
BseSI	GKGCMC	2 cut(s)	726, 732
BseXI	GCAGC	7 cut(s)	23, 29, 145, 202, 405, 539, 912
BsgI	GTGCAG	1 cut(s)	663
Bsh1285I	CGRYCG	1 cut(s)	713
BshFI	GGCC	5 cut(s)	39, 61, 107, 809, 1006
BshNI	GGYRCC	1 cut(s)	831
BsiEI	CGRYCG	1 cut(s)	713
BsiHKAI	GWGCWC	2 cut(s)	726, 732
BslFI	GGGAC	3 cut(s)	548, 826, 1045
BslI	CCNNNNNNNGG	2 cut(s)	298, 552
BsmAI	GTCTC	1 cut(s)	607
BsmFI	GGGAC	3 cut(s)	548, 826, 1045
BsmI	GAATGC	2 cut(s)	1112, 1183
BsnI	GGCC	5 cut(s)	39, 61, 107, 809, 1006
Bsp1286I	GDGCHC	2 cut(s)	726, 732
Bsp143I	GATC	4 cut(s)	181, 261, 979, 1155
Bsp1720I	GCTNAGC	1 cut(s)	372
BspACI	CCGC	5 cut(s)	14, 376, 543, 929, 1003
BspANI	GGCC	5 cut(s)	39, 61, 107, 809, 1006
BspCNI	CTCAG	5 cut(s)	385, 478, 617, 1130, 1186
BspLI	GGNNCC	4 cut(s)	833, 1060, 1061, 1206
BspMI	ACCTGC	1 cut(s)	685
BspPI	GGATC	1 cut(s)	189
BspT107I	GGYRCC	1 cut(s)	831
BsrDI	GCAATG	1 cut(s)	1107
BsrI	ACTGG	2 cut(s)	1053, 1082
BssECI	CCNNGG	2 cut(s)	388, 810
BssMI	GATC	4 cut(s)	181, 261, 979, 1155
BssNAI	GTATAC	1 cut(s)	271
BssNI	GRCGYC	1 cut(s)	202
BssSI	CACGAG	1 cut(s)	1096
BssT1I	CCWWGG	2 cut(s)	388, 810
Bst1107I	GTATAC	1 cut(s)	271
Bst2BI	CACGAG	1 cut(s)	1096
Bst4CI	ACNGT	4 cut(s)	655, 699, 714, 1144
Bst6I	CTCTTC	1 cut(s)	51
BstACI	GRCGYC	1 cut(s)	202
BstBAI	YACGTR	1 cut(s)	727
BstC8I	GCNNGC	2 cut(s)	151, 200
BstDEI	CTNAG	7 cut(s)	372, 465, 591, 604, 692, 1117, 1173
BstF5I	GGATG	4 cut(s)	253, 365, 419, 943
BstHHI	GCGC	1 cut(s)	624
BstKTI	GATC	4 cut(s)	184, 264, 982, 1158
BstMAI	GTCTC	1 cut(s)	607
BstMBI	GATC	4 cut(s)	181, 261, 979, 1155
BstMCI	CGRYCG	1 cut(s)	713
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 17, 155, 164, 393, 806, 922, 1118, 1202
BstNSI	RCATGY	5 cut(s)	314, 622, 746, 959, 1044
BstSLI	GKGCMC	2 cut(s)	726, 732
BstV1I	GCAGC	7 cut(s)	23, 29, 145, 202, 405, 539, 912
BstV2I	GAAGAC	1 cut(s)	1074
BstX2I	RGATCY	1 cut(s)	1155
BstYI	RGATCY	1 cut(s)	1155
BstZ17I	GTATAC	1 cut(s)	271
BsuRI	GGCC	5 cut(s)	39, 61, 107, 809, 1006
BtsCI	GGATG	4 cut(s)	253, 365, 419, 943
BtsIMutI	CAGTG	1 cut(s)	1007
BveI	ACCTGC	1 cut(s)	685
Cac8I	GCNNGC	2 cut(s)	151, 200
CaiI	CAGNNNCTG	1 cut(s)	281
CfoI	GCGC	1 cut(s)	624
Cfr13I	GGNCC	1 cut(s)	1059
CseI	GACGC	1 cut(s)	191
Csp6I	GTAC	1 cut(s)	832
CviAII	CATG	6 cut(s)	311, 619, 743, 956, 1041, 1150
CviQI	GTAC	1 cut(s)	832
DdeI	CTNAG	7 cut(s)	372, 465, 591, 604, 692, 1117, 1173
DpnI	GATC	4 cut(s)	183, 263, 981, 1157
DpnII	GATC	4 cut(s)	181, 261, 979, 1155
EaeI	YGGCCR	2 cut(s)	807, 1004
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
Eco130I	CCWWGG	2 cut(s)	388, 810
Eco47I	GGWCC	1 cut(s)	1059
Eco57I	CTGAAG	3 cut(s)	63, 473, 1031
Eco72I	CACGTG	1 cut(s)	727
EcoO109I	RGGNCCY	1 cut(s)	1059
EcoT14I	CCWWGG	2 cut(s)	388, 810
EcoT22I	ATGCAT	1 cut(s)	943
ErhI	CCWWGG	2 cut(s)	388, 810
FaeI	CATG	6 cut(s)	314, 622, 746, 959, 1044, 1153
FaqI	GGGAC	3 cut(s)	548, 826, 1045
FatI	CATG	6 cut(s)	310, 618, 742, 955, 1040, 1149
FauNDI	CATATG	1 cut(s)	323
FbaI	TGATCA	1 cut(s)	261
FblI	GTMKAC	1 cut(s)	270
FokI	GGATG	4 cut(s)	260, 372, 406, 950
FspBI	CTAG	3 cut(s)	368, 567, 999
GlaI	GCGC	1 cut(s)	623
GsuI	CTGGAG	1 cut(s)	189
HaeIII	GGCC	5 cut(s)	39, 61, 107, 809, 1006
HgaI	GACGC	1 cut(s)	191
HhaI	GCGC	1 cut(s)	624
Hin1I	GRCGYC	1 cut(s)	202
Hin1II	CATG	6 cut(s)	314, 622, 746, 959, 1044, 1153
Hin6I	GCGC	1 cut(s)	622
HinP1I	GCGC	1 cut(s)	622
HindIII	AAGCTT	1 cut(s)	518
HinfI	GANTC	3 cut(s)	133, 580, 1162
HphI	GGTGA	3 cut(s)	666, 826, 864
Hpy166II	GTNNAC	6 cut(s)	271, 674, 724, 730, 817, 1046
Hpy188I	TCNGA	2 cut(s)	898, 1180
Hpy188III	TCNNGA	5 cut(s)	206, 245, 736, 983, 1159
Hpy8I	GTNNAC	6 cut(s)	271, 674, 724, 730, 817, 1046
HpyAV	CCTTC	6 cut(s)	87, 298, 448, 488, 745, 1096
HpyCH4III	ACNGT	4 cut(s)	655, 699, 714, 1144
HpyCH4IV	ACGT	1 cut(s)	726
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 17, 155, 164, 393, 806, 922, 1118, 1202
HpyF3I	CTNAG	7 cut(s)	372, 465, 591, 604, 692, 1117, 1173
HpySE526I	ACGT	1 cut(s)	726
Hsp92I	GRCGYC	1 cut(s)	202
Hsp92II	CATG	6 cut(s)	314, 622, 746, 959, 1044, 1153
HspAI	GCGC	1 cut(s)	622
KflI	GGGWCCC	1 cut(s)	1059
KpnI	GGTACC	1 cut(s)	835
Ksp22I	TGATCA	1 cut(s)	261
Kzo9I	GATC	4 cut(s)	181, 261, 979, 1155
LmnI	GCTCC	2 cut(s)	170, 1210
Lsp1109I	GCAGC	7 cut(s)	23, 29, 145, 202, 405, 539, 912
LweI	GCATC	3 cut(s)	763, 878, 928
MaeI	CTAG	3 cut(s)	368, 567, 999
MaeII	ACGT	1 cut(s)	726
MaeIII	GTNAC	4 cut(s)	614, 1014, 1027, 1138
MalI	GATC	4 cut(s)	183, 263, 981, 1157
MboI	GATC	4 cut(s)	181, 261, 979, 1155
MboII	GAAGA	7 cut(s)	38, 41, 128, 142, 422, 424, 1074
MflI	RGATCY	1 cut(s)	1155
MhlI	GDGCHC	2 cut(s)	726, 732
MlsI	TGGCCA	1 cut(s)	809
MluCI	AATT	4 cut(s)	425, 889, 986, 993
MluNI	TGGCCA	1 cut(s)	809
MmeI	TCCRAC	2 cut(s)	337, 885
Mox20I	TGGCCA	1 cut(s)	809
Mph1103I	ATGCAT	1 cut(s)	943
MscI	TGGCCA	1 cut(s)	809
MseI	TTAA	2 cut(s)	296, 884
MslI	CAYNNNNRTG	4 cut(s)	336, 787, 936, 1221
Msp20I	TGGCCA	1 cut(s)	809
MspA1I	CMGCKG	4 cut(s)	14, 20, 376, 925
Mva1269I	GAATGC	2 cut(s)	1112, 1183
MwoI	GCNNNNNNNGC	9 cut(s)	11, 17, 155, 164, 393, 806, 922, 1118, 1202
NdeI	CATATG	1 cut(s)	323
NdeII	GATC	4 cut(s)	181, 261, 979, 1155
NlaIII	CATG	6 cut(s)	314, 622, 746, 959, 1044, 1153
NlaIV	GGNNCC	4 cut(s)	833, 1060, 1061, 1206
NmeAIII	GCCGAG	1 cut(s)	15
NmuCI	GTSAC	2 cut(s)	614, 1014
NsiI	ATGCAT	1 cut(s)	943
NspI	RCATGY	5 cut(s)	314, 622, 746, 959, 1044
OliI	CACNNNNGTG	2 cut(s)	336, 787
PaqCI	CACCTGC	1 cut(s)	685
PctI	GAATGC	2 cut(s)	1112, 1183
PfeI	GAWTC	3 cut(s)	133, 580, 1162
PflMI	CCANNNNNTGG	1 cut(s)	298
PmaCI	CACGTG	1 cut(s)	727
PmlI	CACGTG	1 cut(s)	727
Ppu21I	YACGTR	1 cut(s)	727
PpuMI	RGGWCCY	1 cut(s)	1059
Psp5II	RGGWCCY	1 cut(s)	1059
PspCI	CACGTG	1 cut(s)	727
PspN4I	GGNNCC	4 cut(s)	833, 1060, 1061, 1206
PspPI	GGNCC	1 cut(s)	1059
PspPPI	RGGWCCY	1 cut(s)	1059
PsrI	GAACNNNNNNTAC	2 cut(s)	490, 522
PstNI	CAGNNNCTG	1 cut(s)	281
PsuI	RGATCY	1 cut(s)	1155
PvuII	CAGCTG	2 cut(s)	20, 925
RsaI	GTAC	1 cut(s)	833
RsaNI	GTAC	1 cut(s)	832
RseI	CAYNNNNRTG	4 cut(s)	336, 787, 936, 1221
SaqAI	TTAA	2 cut(s)	296, 884
Sau3AI	GATC	4 cut(s)	181, 261, 979, 1155
Sau96I	GGNCC	1 cut(s)	1059
SduI	GDGCHC	2 cut(s)	726, 732
SfaNI	GCATC	3 cut(s)	763, 878, 928
SinI	GGWCC	1 cut(s)	1059
SmiMI	CAYNNNNRTG	4 cut(s)	336, 787, 936, 1221
Sse9I	AATT	4 cut(s)	425, 889, 986, 993
SsiI	CCGC	5 cut(s)	14, 376, 543, 929, 1003
SspMI	CTAG	3 cut(s)	368, 567, 999
StyI	CCWWGG	2 cut(s)	388, 810
TaaI	ACNGT	4 cut(s)	655, 699, 714, 1144
TaiI	ACGT	1 cut(s)	729
TaqI	TCGA	1 cut(s)	114
TasI	AATT	4 cut(s)	425, 889, 986, 993
TauI	GCSGC	4 cut(s)	17, 545, 931, 1006
TfiI	GAWTC	3 cut(s)	133, 580, 1162
Tru1I	TTAA	2 cut(s)	296, 884
Tru9I	TTAA	2 cut(s)	296, 884
TscAI	CASTG	1 cut(s)	1014
TseFI	GTSAC	2 cut(s)	614, 1014
TseI	GCWGC	7 cut(s)	11, 17, 158, 215, 393, 527, 925
Tsp45I	GTSAC	2 cut(s)	614, 1014
TspDTI	ATGAA	3 cut(s)	425, 764, 902
TspGWI	ACGGA	1 cut(s)	423
TspRI	CASTG	1 cut(s)	1014
Van91I	CCANNNNNTGG	1 cut(s)	298
VneI	GTGCAC	2 cut(s)	722, 728
VpaK11BI	GGWCC	1 cut(s)	1059
XapI	RAATTY	1 cut(s)	425
XceI	RCATGY	5 cut(s)	314, 622, 746, 959, 1044
XmiI	GTMKAC	1 cut(s)	270
XspI	CTAG	3 cut(s)	368, 567, 999
Zsp2I	ATGCAT	1 cut(s)	943

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.