Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001488

Physical Location & Seq

Genomic Coordinates Forward (+)

56836573 .. 56838864

Gene Structure 2292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG363100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGCAATTGCACTTGGAATTCTCTTTGCAGTGGTCGTGGTCCTTTATCCGCTAATCCTTCATCTCATTCCGGTGGTACTGCTCTGCGTCTTAGGCCTCTTTGCCAATCTGGTTCAGATCCTAGTGTGCGCAGAGCAGGAAACGAGTCATTTAAAGGGTAAAGAACATGAACTTGTCATATCCAATGCTAGGAGTGATGCTGATCATCTTGTTGAACTGCGGGTTACCTCAACTCAGCGAATGGCTGAGAATTCAGTTCTTGATGCACATACTAGTGAAATTCAATTTGTTAATGGACGTGTACCACAATCTATATCAGAAATACGAGGGTTGGTGTGCGAGGACATAACTAGGGGTCTAGAGGGTATTGCCATTCCAGCTAGCAATTTGGTCGATGATCCGCCTGTTGCTCCTACAGGCAAGTTGATCATGTTCATGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000775 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006325 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008327 GO:0008757 GO:0009987 GO:0010216 GO:0010385 GO:0010428 GO:0010429 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0034641 GO:0034968 GO:0036094 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0046974 GO:0051276 GO:0051567 GO:0061647 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

147

Amino Acids

15.94

Weight (kDa)

4.99

Isoelectric Point (pI)

29.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57650
fragaria_vesca	FvH4_6g23240 FvH4_6g23240 FvH4_6g23240 FvH4_6g36950 FvH4_6g36960 FvH4_6g36962
malus_domestica	MD12G1066700.v1.1 MD14G1067300.v1.1
prunus_persica	Prupe.7G067600_v2.0.a1
pyrus_communis	pycom12g05810 pycom14g05530
rosa_chinensis	RchiOBHm_Chr2g0149391 RchiOBHm_Chr2g0149421 RchiOBHm_Chr2g0149441 RchiOBHm_Chr2g0149461 RchiOBHm_Chr2g0149471 RchiOBHm_Chr3g0481071
rosa_laevigata	RLG00000020324 RLG00000020404 RLG00000020406 RLG00000020407 RLG00000023423
rosa_multiflora	Rmu_co8437371.1_g000001 Rmu_sc0000873.1_g000022 Rmu_sc0000873.1_g000026 Rmu_sc0000873.1_g000027 Rmu_sc0000873.1_g000029 Rmu_sc0001551.1_g000024 Rmu_sc0002187.1_g000054
rosa_roxburghii	Rroxscaffold_2G00098120 Rroxscaffold_2G00098130 Rroxscaffold_6G00400660
rosa_rugosa	Rorug03G0190000 Rorug03G0190100 Rorug04G0357400 Rorug04G0357500 Rorug04G0357600
rosa_samantha	Rh3AG240300 Rh3BG276000 Rh3CG271300 Rh3DG267300 Rh5BG363100
rosa_wichuraiana	Rw2G038400 Rw2G038410 Rw2G038420 Rw2G038430 Rw2G038440 Rw2G038450 Rw3G021460 Rw6G011250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	130
AciI	CCGC	3 cut(s)	50, 220, 401
AclWI	GGATC	2 cut(s)	112, 392
AcsI	RAATTY	3 cut(s)	18, 250, 279
AfaI	GTAC	2 cut(s)	78, 303
AfiI	CCNNNNNNNGG	1 cut(s)	189
AflIII	ACRYGT	1 cut(s)	298
AgsI	TTSAA	2 cut(s)	215, 284
AhlI	ACTAGT	1 cut(s)	272
AjiI	CACGTC	1 cut(s)	299
AluBI	AGCT	1 cut(s)	380
AluI	AGCT	1 cut(s)	380
AlwI	GGATC	2 cut(s)	112, 392
AoxI	GGCC	1 cut(s)	94
ApoI	RAATTY	3 cut(s)	18, 250, 279
AspLEI	GCGC	1 cut(s)	131
AspS9I	GGNCC	1 cut(s)	40
AsuNHI	GCTAGC	1 cut(s)	380
AvaII	GGWCC	1 cut(s)	40
BcgI	CGANNNNNNTGC	2 cut(s)	373, 407
BclI	TGATCA	2 cut(s)	202, 426
BcuI	ACTAGT	1 cut(s)	272
BfaI	CTAG	6 cut(s)	122, 189, 273, 351, 359, 381
BfmI	CTRYAG	1 cut(s)	414
Bme18I	GGWCC	1 cut(s)	40
BmgBI	CACGTC	1 cut(s)	299
BmgT120I	GGNCC	1 cut(s)	40
BmsI	GCATC	2 cut(s)	187, 253
BmtI	GCTAGC	1 cut(s)	384
BsaBI	GATNNNNATC	1 cut(s)	201
BsaWI	WCCGGW	1 cut(s)	70
Bsc4I	CCNNNNNNNGG	1 cut(s)	189
Bse8I	GATNNNNATC	1 cut(s)	201
BseJI	GATNNNNATC	1 cut(s)	201
BseLI	CCNNNNNNNGG	1 cut(s)	189
BseMII	CTCAG	2 cut(s)	237, 248
BshFI	GGCC	1 cut(s)	96
BsiSI	CCGG	1 cut(s)	71
BslI	CCNNNNNNNGG	1 cut(s)	189
BsnI	GGCC	1 cut(s)	96
Bsp143I	GATC	4 cut(s)	117, 202, 397, 426
BspACI	CCGC	3 cut(s)	50, 220, 401
BspANI	GGCC	1 cut(s)	96
BspCNI	CTCAG	2 cut(s)	238, 247
BspOI	GCTAGC	1 cut(s)	384
BspPI	GGATC	2 cut(s)	112, 392
BssMI	GATC	4 cut(s)	117, 202, 397, 426
BstC8I	GCNNGC	1 cut(s)	382
BstDEI	CTNAG	3 cut(s)	91, 234, 246
BstEII	GGTNACC	1 cut(s)	223
BstHHI	GCGC	1 cut(s)	131
BstKTI	GATC	4 cut(s)	120, 205, 400, 429
BstMBI	GATC	4 cut(s)	117, 202, 397, 426
BstMWI	GCNNNNNNNGC	2 cut(s)	93, 377
BstPI	GGTNACC	1 cut(s)	223
BstSFI	CTRYAG	1 cut(s)	414
BstX2I	RGATCY	1 cut(s)	117
BstYI	RGATCY	1 cut(s)	117
BsuRI	GGCC	1 cut(s)	96
BtrI	CACGTC	1 cut(s)	299
BtsI	GCAGTG	1 cut(s)	36
BtsIMutI	CAGTG	1 cut(s)	36
Cac8I	GCNNGC	1 cut(s)	382
CfoI	GCGC	1 cut(s)	131
Cfr13I	GGNCC	1 cut(s)	40
CseI	GACGC	1 cut(s)	76
Csp6I	GTAC	2 cut(s)	77, 302
CviAII	CATG	3 cut(s)	167, 430, 436
CviJI	RGCY	3 cut(s)	96, 245, 380
CviKI_1	RGCY	3 cut(s)	96, 245, 380
CviQI	GTAC	2 cut(s)	77, 302
DdeI	CTNAG	3 cut(s)	91, 234, 246
DpnI	GATC	4 cut(s)	119, 204, 399, 428
DpnII	GATC	4 cut(s)	117, 202, 397, 426
DraI	TTTAAA	1 cut(s)	153
EciI	GGCGGA	1 cut(s)	390
Eco147I	AGGCCT	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	40
Eco91I	GGTNACC	1 cut(s)	223
EcoO65I	GGTNACC	1 cut(s)	223
EcoRI	GAATTC	2 cut(s)	18, 250
FaeI	CATG	3 cut(s)	170, 433, 439
FaiI	YATR	7 cut(s)	168, 179, 270, 314, 347, 431, 437
FatI	CATG	3 cut(s)	166, 429, 435
FauI	CCCGC	1 cut(s)	213
FbaI	TGATCA	2 cut(s)	202, 426
FspBI	CTAG	6 cut(s)	122, 189, 273, 351, 359, 381
FspI	TGCGCA	1 cut(s)	130
GlaI	GCGC	1 cut(s)	130
HaeIII	GGCC	1 cut(s)	96
HapII	CCGG	1 cut(s)	71
HgaI	GACGC	1 cut(s)	76
HhaI	GCGC	1 cut(s)	131
Hin1II	CATG	3 cut(s)	170, 433, 439
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HinfI	GANTC	1 cut(s)	145
HpaII	CCGG	1 cut(s)	71
Hpy166II	GTNNAC	1 cut(s)	302
Hpy188I	TCNGA	2 cut(s)	117, 319
Hpy188III	TCNNGA	2 cut(s)	260, 359
Hpy8I	GTNNAC	1 cut(s)	302
HpyAV	CCTTC	1 cut(s)	68
HpyCH4IV	ACGT	1 cut(s)	298
HpyCH4V	TGCA	3 cut(s)	11, 29, 266
HpyF10VI	GCNNNNNNNGC	2 cut(s)	93, 377
HpyF3I	CTNAG	3 cut(s)	91, 234, 246
HpySE526I	ACGT	1 cut(s)	298
Hsp92II	CATG	3 cut(s)	170, 433, 439
HspAI	GCGC	1 cut(s)	129
Ksp22I	TGATCA	2 cut(s)	202, 426
Kzo9I	GATC	4 cut(s)	117, 202, 397, 426
LmnI	GCTCC	1 cut(s)	415
LpnPI	CCDG	6 cut(s)	84, 95, 122, 390, 402, 417
LweI	GCATC	2 cut(s)	187, 253
MaeI	CTAG	6 cut(s)	122, 189, 273, 351, 359, 381
MaeII	ACGT	1 cut(s)	298
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	4 cut(s)	119, 204, 399, 428
MboI	GATC	4 cut(s)	117, 202, 397, 426
MfeI	CAATTG	1 cut(s)	6
MflI	RGATCY	1 cut(s)	117
MluCI	AATT	6 cut(s)	6, 18, 250, 279, 284, 385
MlyI	GAGTC	1 cut(s)	154
MnlI	CCTC	5 cut(s)	107, 238, 320, 334, 355
MseI	TTAA	2 cut(s)	152, 291
MslI	CAYNNNNRTG	3 cut(s)	71, 273, 434
MspI	CCGG	1 cut(s)	71
MunI	CAATTG	1 cut(s)	6
MwoI	GCNNNNNNNGC	2 cut(s)	93, 377
NdeII	GATC	4 cut(s)	117, 202, 397, 426
NheI	GCTAGC	1 cut(s)	380
NlaIII	CATG	3 cut(s)	170, 433, 439
NsbI	TGCGCA	1 cut(s)	130
PceI	AGGCCT	1 cut(s)	96
PleI	GAGTC	1 cut(s)	153
PpsI	GAGTC	1 cut(s)	153
PspEI	GGTNACC	1 cut(s)	223
PspPI	GGNCC	1 cut(s)	40
PsuI	RGATCY	1 cut(s)	117
RsaI	GTAC	2 cut(s)	78, 303
RsaNI	GTAC	2 cut(s)	77, 302
RseI	CAYNNNNRTG	3 cut(s)	71, 273, 434
SaqAI	TTAA	2 cut(s)	152, 291
Sau3AI	GATC	4 cut(s)	117, 202, 397, 426
Sau96I	GGNCC	1 cut(s)	40
SchI	GAGTC	1 cut(s)	154
SetI	ASST	3 cut(s)	230, 301, 382
SfaNI	GCATC	2 cut(s)	187, 253
SfcI	CTRYAG	1 cut(s)	414
SinI	GGWCC	1 cut(s)	40
SmiMI	CAYNNNNRTG	3 cut(s)	71, 273, 434
SpeI	ACTAGT	1 cut(s)	272
Sse9I	AATT	6 cut(s)	6, 18, 250, 279, 284, 385
SseBI	AGGCCT	1 cut(s)	96
SsiI	CCGC	3 cut(s)	50, 220, 401
SspMI	CTAG	6 cut(s)	122, 189, 273, 351, 359, 381
StuI	AGGCCT	1 cut(s)	96
TaiI	ACGT	1 cut(s)	301
TaqI	TCGA	1 cut(s)	393
TasI	AATT	6 cut(s)	6, 18, 250, 279, 284, 385
Tru1I	TTAA	2 cut(s)	152, 291
Tru9I	TTAA	2 cut(s)	152, 291
TscAI	CASTG	1 cut(s)	36
TspDTI	ATGAA	3 cut(s)	50, 183, 424
TspRI	CASTG	1 cut(s)	36
VpaK11BI	GGWCC	1 cut(s)	40
XapI	RAATTY	3 cut(s)	18, 250, 279
XbaI	TCTAGA	1 cut(s)	358
XspI	CTAG	6 cut(s)	122, 189, 273, 351, 359, 381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.