Rw2G038430

1-acyl-sn-glycerol-3-phosphate acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0001488
Physical Location & Seq
Forward (+)
63376611 .. 63382430
5820 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G038430.1

Sequence Viewer

Length: 876 bp
ATGTTAAATTGGGTAATCCTAGAGTGCATAGAGCAGGAAAACAGTCATTTAAAGGGTGAAGAGCATGAACTTGTCATATCCAGTGCTAGAAATGATGCCGATCCTCTTCTTGAATTGGTTCTCGCTCAGTGGTCAGGTTGCCTTGGCAGTTTATTAGCTGTAATAAAGACATCAGCAAGATATATTCTGTCAGATCTAAAGGACTTCCCTCAGCCCTTTTGGTTTTCTGTTGTCCTAGAAAGAACTGGTTTTACTCAGGGAGAGCTTCTAGCTGCACAGAGGCTTCCTGTCCCTAGCAAGGTTTTGAGTCCTGATACTAAGGATTTGGTCTATGCAGTAAGACGTGCGTACTCTGTTGTTCCAGCCATTTATGTTATAACAGTGGCTATTCCTAAAACTTCACCTCCAACTACAGTTGAAAGTGTAATTAAAGGGGGACCTTCTGTGGTGCATGTGTACATTAAAAGGCATGCGACTAAAAAATGGCCTGAAACTGATGATGCTGTTGAAAAGTGGTGCACAGAAATACTTGAAGCCGAGGATGCATTATTGGACGAACATATAGCGGAACGAACTTTTGTTGTTGAAGGATTGCAAGCTATTGGTCAGCCACTAAAGTGTTTCTTGGTTATATCTCTAATTGTGTTGTGGGCTCTAAAGTTCAACTTTGTCTGCTGTTCCACCCTGCTTGTATTGAGTGCTGCCCTCTTTACTGGTCAGATGCTTACTCTGTTCGGCTGTGGAGTTCTTTCGCTGTTGCAATGTTTCATGGAAGCCGCTATAGCAAACATTAGTTGGTCAAAGTACCTCAAGCCCATCTGTGGCTGGTTGATTTACAATCTTGGAGAGTTGTGTTTGTTGCTCCCTTGTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko00564 ko01100 ko01110 ko04072 map00561 map00564 map01100 map01110 map04072
Pfam Domains
Protein Families
Acyltransf_C Acyltransferase

Protein Analysis

291

Amino Acids

32.29

Weight (kDa)

5.22

Isoelectric Point (pI)

39.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyltransf_C PF16076 142 - 212 2e-12 Acyltransferase C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 377
AciI CCGC 2 cut(s) 566, 777
AclWI GGATC 1 cut(s) 95
AfaI GTAC 3 cut(s) 350, 458, 806
AfiI CCNNNNNNNGG 2 cut(s) 298, 821
AgsI TTSAA 6 cut(s) 113, 419, 509, 533, 587, 664
AjiI CACGTC 1 cut(s) 344
AleI CACNNNNGTG 1 cut(s) 616
AluBI AGCT 4 cut(s) 158, 265, 272, 599
AluI AGCT 4 cut(s) 158, 265, 272, 599
Alw21I GWGCWC 1 cut(s) 521
Alw44I GTGCAC 1 cut(s) 517
AlwI GGATC 1 cut(s) 95
AoxI GGCC 1 cut(s) 485
ApaLI GTGCAC 1 cut(s) 517
ApeKI GCWGC 2 cut(s) 272, 701
Asp700I GAANNNNTTC 1 cut(s) 117
AspS9I GGNCC 1 cut(s) 437
AsuHPI GGTGA 2 cut(s) 68, 393
AvaII GGWCC 1 cut(s) 437
BaeGI GKGCMC 1 cut(s) 521
BanII GRGCYC 1 cut(s) 655
Bbv12I GWGCWC 1 cut(s) 521
BbvCI CCTCAGC 1 cut(s) 210
BbvI GCAGC 2 cut(s) 259, 688
BccI CCATC 1 cut(s) 824
BfaI CTAG 5 cut(s) 20, 87, 236, 269, 294
BfmI CTRYAG 2 cut(s) 411, 780
BglII AGATCT 1 cut(s) 193
BisI GCNGC 3 cut(s) 273, 702, 777
BlsI GCNGC 3 cut(s) 274, 703, 778
Bme18I GGWCC 1 cut(s) 437
BmgBI CACGTC 1 cut(s) 344
BmgT120I GGNCC 1 cut(s) 437
BmiI GGNNCC 1 cut(s) 438
BmsI GCATC 4 cut(s) 85, 490, 532, 711
Bpu10I CCTNAGC 1 cut(s) 210
BpuEI CTTGAG 1 cut(s) 794
BsaBI GATNNNNATC 1 cut(s) 99
BsaJI CCNNGG 2 cut(s) 142, 537
BsaXI ACNNNNNCTCC 2 cut(s) 388, 418
Bsc4I CCNNNNNNNGG 2 cut(s) 298, 821
Bse1I ACTGG 3 cut(s) 81, 250, 718
Bse3DI GCAATG 1 cut(s) 767
Bse8I GATNNNNATC 1 cut(s) 99
BseDI CCNNGG 2 cut(s) 142, 537
BseGI GGATG 1 cut(s) 547
BseJI GATNNNNATC 1 cut(s) 99
BseLI CCNNNNNNNGG 2 cut(s) 298, 821
BseMI GCAATG 1 cut(s) 767
BseMII CTCAG 3 cut(s) 140, 224, 269
BseNI ACTGG 3 cut(s) 81, 250, 718
BseSI GKGCMC 1 cut(s) 521
BseXI GCAGC 2 cut(s) 259, 688
BsgI GTGCAG 1 cut(s) 258
BshFI GGCC 1 cut(s) 487
BsiHKAI GWGCWC 1 cut(s) 521
BslFI GGGAC 2 cut(s) 275, 450
BslI CCNNNNNNNGG 2 cut(s) 298, 821
BsmFI GGGAC 2 cut(s) 275, 450
BsnI GGCC 1 cut(s) 487
Bsp1286I GDGCHC 2 cut(s) 521, 655
Bsp1407I TGTACA 1 cut(s) 456
Bsp143I GATC 2 cut(s) 100, 193
BspACI CCGC 2 cut(s) 566, 777
BspANI GGCC 1 cut(s) 487
BspCNI CTCAG 3 cut(s) 139, 223, 268
BspLI GGNNCC 1 cut(s) 438
BspPI GGATC 1 cut(s) 95
BspQI GCTCTTC 1 cut(s) 54
BsrDI GCAATG 1 cut(s) 767
BsrGI TGTACA 1 cut(s) 456
BsrI ACTGG 3 cut(s) 81, 250, 718
BssECI CCNNGG 2 cut(s) 142, 537
BssMI GATC 2 cut(s) 100, 193
BssT1I CCWWGG 1 cut(s) 142
Bst4CI ACNGT 3 cut(s) 44, 382, 415
Bst6I CTCTTC 2 cut(s) 54, 111
BstAUI TGTACA 1 cut(s) 456
BstC8I GCNNGC 2 cut(s) 471, 597
BstDEI CTNAG 4 cut(s) 126, 210, 255, 318
BstF5I GGATG 1 cut(s) 547
BstKTI GATC 2 cut(s) 103, 196
BstMBI GATC 2 cut(s) 100, 193
BstMWI GCNNNNNNNGC 2 cut(s) 542, 782
BstNSI RCATGY 2 cut(s) 455, 473
BstSFI CTRYAG 2 cut(s) 411, 780
BstSLI GKGCMC 1 cut(s) 521
BstV1I GCAGC 2 cut(s) 259, 688
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
BsuRI GGCC 1 cut(s) 487
BtrI CACGTC 1 cut(s) 344
BtsCI GGATG 1 cut(s) 547
BtsIMutI CAGTG 3 cut(s) 88, 134, 387
Cac8I GCNNGC 2 cut(s) 471, 597
Cfr13I GGNCC 1 cut(s) 437
Csp6I GTAC 3 cut(s) 349, 457, 805
CspCI CAANNNNNGTGG 2 cut(s) 670, 705
CviAII CATG 4 cut(s) 65, 452, 470, 769
CviQI GTAC 3 cut(s) 349, 457, 805
DdeI CTNAG 4 cut(s) 126, 210, 255, 318
DpnI GATC 2 cut(s) 102, 195
DpnII GATC 2 cut(s) 100, 193
DraI TTTAAA 1 cut(s) 51
Eam1104I CTCTTC 2 cut(s) 54, 111
EarI CTCTTC 2 cut(s) 54, 111
Eco130I CCWWGG 1 cut(s) 142
Eco24I GRGCYC 1 cut(s) 655
Eco47I GGWCC 1 cut(s) 437
EcoO109I RGGNCCY 1 cut(s) 437
EcoT14I CCWWGG 1 cut(s) 142
EcoT22I ATGCAT 1 cut(s) 547
EcoT38I GRGCYC 1 cut(s) 655
ErhI CCWWGG 1 cut(s) 142
FaeI CATG 4 cut(s) 68, 455, 473, 772
FalI AAGNNNNNCTT 4 cut(s) 608, 640, 650, 682
FaqI GGGAC 2 cut(s) 275, 450
FatI CATG 4 cut(s) 64, 451, 469, 768
Fnu4HI GCNGC 3 cut(s) 273, 702, 777
FokI GGATG 1 cut(s) 554
FriOI GRGCYC 1 cut(s) 655
Fsp4HI GCNGC 3 cut(s) 273, 702, 777
FspBI CTAG 5 cut(s) 20, 87, 236, 269, 294
GluI GCNGC 3 cut(s) 273, 702, 777
HaeIII GGCC 1 cut(s) 487
Hin1II CATG 4 cut(s) 68, 455, 473, 772
HinfI GANTC 1 cut(s) 307
HphI GGTGA 2 cut(s) 68, 393
Hpy166II GTNNAC 2 cut(s) 457, 519
Hpy188I TCNGA 2 cut(s) 193, 720
Hpy188III TCNNGA 2 cut(s) 110, 311
Hpy8I GTNNAC 2 cut(s) 457, 519
HpyAV CCTTC 2 cut(s) 450, 581
HpyCH4III ACNGT 3 cut(s) 44, 382, 415
HpyCH4IV ACGT 1 cut(s) 343
HpyCH4V TGCA 8 cut(s) 27, 275, 335, 451, 519, 545, 595, 760
HpyF10VI GCNNNNNNNGC 2 cut(s) 542, 782
HpyF3I CTNAG 4 cut(s) 126, 210, 255, 318
HpySE526I ACGT 1 cut(s) 343
Hsp92II CATG 4 cut(s) 68, 455, 473, 772
Kzo9I GATC 2 cut(s) 100, 193
LguI GCTCTTC 1 cut(s) 54
LmnI GCTCC 1 cut(s) 867
Lsp1109I GCAGC 2 cut(s) 259, 688
LweI GCATC 4 cut(s) 85, 490, 532, 711
MaeI CTAG 5 cut(s) 20, 87, 236, 269, 294
MaeII ACGT 1 cut(s) 343
MalI GATC 2 cut(s) 102, 195
MboI GATC 2 cut(s) 100, 193
MboII GAAGA 2 cut(s) 71, 98
MflI RGATCY 1 cut(s) 193
MhlI GDGCHC 2 cut(s) 521, 655
MluCI AATT 4 cut(s) 7, 113, 426, 639
MlyI GAGTC 1 cut(s) 316
MmeI TCCRAC 1 cut(s) 431
MnlI CCTC 7 cut(s) 114, 219, 273, 414, 532, 716, 818
Mph1103I ATGCAT 1 cut(s) 547
MroXI GAANNNNTTC 1 cut(s) 117
MseI TTAA 5 cut(s) 5, 50, 429, 462, 874
MslI CAYNNNNRTG 1 cut(s) 616
MwoI GCNNNNNNNGC 2 cut(s) 542, 782
NdeII GATC 2 cut(s) 100, 193
NlaIII CATG 4 cut(s) 68, 455, 473, 772
NlaIV GGNNCC 1 cut(s) 438
NmeAIII GCCGAG 1 cut(s) 562
NsiI ATGCAT 1 cut(s) 547
NspI RCATGY 2 cut(s) 455, 473
OliI CACNNNNGTG 1 cut(s) 616
PaeI GCATGC 1 cut(s) 473
PciSI GCTCTTC 1 cut(s) 54
PdmI GAANNNNTTC 1 cut(s) 117
PkrI GCNGC 3 cut(s) 274, 703, 778
PleI GAGTC 1 cut(s) 315
PpsI GAGTC 1 cut(s) 315
PpuMI RGGWCCY 1 cut(s) 437
PsiI TTATAA 1 cut(s) 377
Psp5II RGGWCCY 1 cut(s) 437
PspN4I GGNNCC 1 cut(s) 438
PspPI GGNCC 1 cut(s) 437
PspPPI RGGWCCY 1 cut(s) 437
PsrI GAACNNNNNNTAC 2 cut(s) 235, 267
PsuI RGATCY 1 cut(s) 193
RsaI GTAC 3 cut(s) 350, 458, 806
RsaNI GTAC 3 cut(s) 349, 457, 805
RseI CAYNNNNRTG 1 cut(s) 616
SapI GCTCTTC 1 cut(s) 54
SaqAI TTAA 5 cut(s) 5, 50, 429, 462, 874
SatI GCNGC 3 cut(s) 273, 702, 777
Sau3AI GATC 2 cut(s) 100, 193
Sau96I GGNCC 1 cut(s) 437
SchI GAGTC 1 cut(s) 316
SduI GDGCHC 2 cut(s) 521, 655
SfaNI GCATC 4 cut(s) 85, 490, 532, 711
SfcI CTRYAG 2 cut(s) 411, 780
SinI GGWCC 1 cut(s) 437
SmiMI CAYNNNNRTG 1 cut(s) 616
SmlI CTYRAG 1 cut(s) 809
SmoI CTYRAG 1 cut(s) 809
SphI GCATGC 1 cut(s) 473
Sse9I AATT 4 cut(s) 7, 113, 426, 639
SsiI CCGC 2 cut(s) 566, 777
SspMI CTAG 5 cut(s) 20, 87, 236, 269, 294
StyI CCWWGG 1 cut(s) 142
TaaI ACNGT 3 cut(s) 44, 382, 415
TaiI ACGT 1 cut(s) 346
TasI AATT 4 cut(s) 7, 113, 426, 639
TatI WGTACW 1 cut(s) 456
TauI GCSGC 1 cut(s) 779
Tru1I TTAA 5 cut(s) 5, 50, 429, 462, 874
Tru9I TTAA 5 cut(s) 5, 50, 429, 462, 874
TscAI CASTG 3 cut(s) 88, 134, 387
TseI GCWGC 2 cut(s) 272, 701
TspDTI ATGAA 2 cut(s) 81, 757
TspRI CASTG 3 cut(s) 88, 134, 387
VneI GTGCAC 1 cut(s) 517
VpaK11BI GGWCC 1 cut(s) 437
XceI RCATGY 2 cut(s) 455, 473
XmnI GAANNNNTTC 1 cut(s) 117
XspI CTAG 5 cut(s) 20, 87, 236, 269, 294
Zsp2I ATGCAT 1 cut(s) 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.