Rmu_sc0000873.1_g000029

1-acyl-sn-glycerol-3-phosphate acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000873.1
OG0001488
Physical Location & Seq
Forward (+)
133933 .. 139789
5857 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000873.1_g000029.1.cds

Sequence Viewer

Length: 852 bp
atggcgattgcacttggaattctctttgcagtggtcgtggtcctttatccgctaatccttcatctcattccggtggtgctgctctgcgtctcaggcgtctttgccaatctggttcaggcgttttgctttgtttttatctggccgatctcaaagaatgcatacgcaaggataaacggcgtggttaaagaattggattggctggttcttctaggcctcattgattggtgtgctggcgttaagatcctagagtgcgtagagcaggaaagcagtcatttaaagggtgaagagcatgaacttgtcatatccagtgctagaaatgataccgatcctcttcttgaattggttctcgctcagtggtcaggttgcctgggcagtttattagctgtaataaagacaacagcaagatacattctggtcagagggtggccaatgtggttttctgaatatgttttttcagaaagcagtgcccatgatgcaagaaaacttaagtcagatctaaaggacttccgtcagcccttttggttttctgttgtcctagaaagaactggttttactcagggagagcttctagctgcacagaggcttcctgtcccttgcaaggttttgagtcctgatactaaggatgcattactggacaaacatatagcagaacgaacttttggcgttaaaggattgcaagctattggttatatctctaattgtgttgtgggctctaaagttcaactttgtctgctgttccacactgcttgtattgagtgctgccctctttactggtcggatgcttactctgttcagctgtggagtgctttcgctgttgcagtgtttcatggaagccgctatagcaaacattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko00564 ko01100 ko01110 ko04072 map00561 map00564 map01100 map01110 map04072
Pfam Domains
Protein Families
Acyltransf_C Acyltransferase

Protein Analysis

283

Amino Acids

31.58

Weight (kDa)

6.7

Isoelectric Point (pI)

30.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 50, 835
AclWI GGATC 2 cut(s) 235, 320
AcoI YGGCCR 2 cut(s) 140, 425
AcsI RAATTY 1 cut(s) 18
AcyI GRCGYC 1 cut(s) 96
AfiI CCNNNNNNNGG 1 cut(s) 598
AflII CTTAAG 1 cut(s) 485
AgsI TTSAA 2 cut(s) 338, 722
AjnI CCWGG 1 cut(s) 366
AjuI GAANNNNNNNTTGG 4 cut(s) 421, 453, 642, 674
AluBI AGCT 5 cut(s) 383, 565, 572, 680, 796
AluI AGCT 5 cut(s) 383, 565, 572, 680, 796
Alw26I GTCTC 1 cut(s) 94
AlwI GGATC 2 cut(s) 235, 320
AoxI GGCC 3 cut(s) 140, 211, 425
ApeKI GCWGC 3 cut(s) 79, 572, 759
ApoI RAATTY 1 cut(s) 18
Asp700I GAANNNNTTC 1 cut(s) 342
AspS9I GGNCC 1 cut(s) 40
AsuHPI GGTGA 1 cut(s) 293
AvaII GGWCC 1 cut(s) 40
BaeGI GKGCMC 1 cut(s) 469
BalI TGGCCA 1 cut(s) 427
BanII GRGCYC 1 cut(s) 713
BbvI GCAGC 3 cut(s) 66, 559, 746
BceAI ACGGC 1 cut(s) 190
BciT130I CCWGG 1 cut(s) 368
BcoDI GTCTC 1 cut(s) 94
BfaI CTAG 5 cut(s) 209, 245, 312, 536, 569
BfmI CTRYAG 1 cut(s) 838
BfrI CTTAAG 1 cut(s) 485
BglII AGATCT 1 cut(s) 493
BisI GCNGC 4 cut(s) 80, 573, 760, 835
BlsI GCNGC 4 cut(s) 81, 574, 761, 836
Bme1390I CCNGG 1 cut(s) 368
Bme18I GGWCC 1 cut(s) 40
BmgT120I GGNCC 1 cut(s) 40
BmrFI CCNGG 1 cut(s) 368
BmsI GCATC 3 cut(s) 463, 613, 769
BoxI GACNNNNGTC 1 cut(s) 507
BsaBI GATNNNNATC 1 cut(s) 324
BsaHI GRCGYC 1 cut(s) 96
BsaJI CCNNGG 1 cut(s) 367
BsaWI WCCGGW 1 cut(s) 70
Bsc4I CCNNNNNNNGG 1 cut(s) 598
Bse1I ACTGG 4 cut(s) 306, 550, 636, 776
Bse8I GATNNNNATC 1 cut(s) 324
BseBI CCWGG 1 cut(s) 368
BseDI CCNNGG 1 cut(s) 367
BseGI GGATG 2 cut(s) 628, 784
BseJI GATNNNNATC 1 cut(s) 324
BseLI CCNNNNNNNGG 1 cut(s) 598
BseMII CTCAG 3 cut(s) 105, 365, 569
BseNI ACTGG 4 cut(s) 306, 550, 636, 776
BseSI GKGCMC 1 cut(s) 469
BseXI GCAGC 3 cut(s) 66, 559, 746
BsgI GTGCAG 1 cut(s) 558
BshFI GGCC 3 cut(s) 142, 213, 427
BsiSI CCGG 1 cut(s) 71
BslFI GGGAC 1 cut(s) 575
BslI CCNNNNNNNGG 1 cut(s) 598
BsmAI GTCTC 1 cut(s) 94
BsmBI CGTCTC 1 cut(s) 94
BsmFI GGGAC 1 cut(s) 575
BsmI GAATGC 1 cut(s) 160
BsnI GGCC 3 cut(s) 142, 213, 427
Bsp1286I GDGCHC 2 cut(s) 469, 713
Bsp143I GATC 4 cut(s) 144, 240, 325, 493
BspACI CCGC 2 cut(s) 50, 835
BspANI GGCC 3 cut(s) 142, 213, 427
BspCNI CTCAG 3 cut(s) 104, 364, 568
BspPI GGATC 2 cut(s) 235, 320
BspQI GCTCTTC 1 cut(s) 279
BspTI CTTAAG 1 cut(s) 485
BsrI ACTGG 4 cut(s) 306, 550, 636, 776
BssECI CCNNGG 1 cut(s) 367
BssMI GATC 4 cut(s) 144, 240, 325, 493
BssNI GRCGYC 1 cut(s) 96
Bst2UI CCWGG 1 cut(s) 368
Bst6I CTCTTC 2 cut(s) 279, 336
BstACI GRCGYC 1 cut(s) 96
BstAFI CTTAAG 1 cut(s) 485
BstC8I GCNNGC 2 cut(s) 232, 678
BstDEI CTNAG 4 cut(s) 91, 351, 555, 618
BstF5I GGATG 2 cut(s) 628, 784
BstKTI GATC 4 cut(s) 147, 243, 328, 496
BstMAI GTCTC 1 cut(s) 94
BstMBI GATC 4 cut(s) 144, 240, 325, 493
BstMWI GCNNNNNNNGC 3 cut(s) 93, 473, 840
BstNI CCWGG 1 cut(s) 368
BstPAI GACNNNNGTC 1 cut(s) 507
BstSCI CCNGG 1 cut(s) 366
BstSFI CTRYAG 1 cut(s) 838
BstSLI GKGCMC 1 cut(s) 469
BstV1I GCAGC 3 cut(s) 66, 559, 746
BstX2I RGATCY 2 cut(s) 240, 493
BstYI RGATCY 2 cut(s) 240, 493
BsuRI GGCC 3 cut(s) 142, 213, 427
BtsCI GGATG 2 cut(s) 628, 784
BtsI GCAGTG 4 cut(s) 36, 469, 741, 825
BtsIMutI CAGTG 6 cut(s) 36, 313, 359, 469, 741, 825
Cac8I GCNNGC 2 cut(s) 232, 678
Cfr13I GGNCC 1 cut(s) 40
CseI GACGC 2 cut(s) 76, 85
CspCI CAANNNNNGTGG 2 cut(s) 728, 763
CviAII CATG 3 cut(s) 290, 470, 827
DdeI CTNAG 4 cut(s) 91, 351, 555, 618
DpnI GATC 4 cut(s) 146, 242, 327, 495
DpnII GATC 4 cut(s) 144, 240, 325, 493
DraI TTTAAA 1 cut(s) 276
EaeI YGGCCR 2 cut(s) 140, 425
Eam1104I CTCTTC 2 cut(s) 279, 336
EarI CTCTTC 2 cut(s) 279, 336
Eco147I AGGCCT 1 cut(s) 213
Eco24I GRGCYC 1 cut(s) 713
Eco47I GGWCC 1 cut(s) 40
EcoRI GAATTC 1 cut(s) 18
EcoRII CCWGG 1 cut(s) 366
EcoT22I ATGCAT 2 cut(s) 160, 628
EcoT38I GRGCYC 1 cut(s) 713
Esp3I CGTCTC 1 cut(s) 94
FaeI CATG 3 cut(s) 293, 473, 830
FalI AAGNNNNNCTT 2 cut(s) 708, 740
FaqI GGGAC 1 cut(s) 575
FatI CATG 3 cut(s) 289, 469, 826
Fnu4HI GCNGC 4 cut(s) 80, 573, 760, 835
FokI GGATG 2 cut(s) 635, 791
FriOI GRGCYC 1 cut(s) 713
Fsp4HI GCNGC 4 cut(s) 80, 573, 760, 835
FspBI CTAG 5 cut(s) 209, 245, 312, 536, 569
GluI GCNGC 4 cut(s) 80, 573, 760, 835
HaeIII GGCC 3 cut(s) 142, 213, 427
HapII CCGG 1 cut(s) 71
HgaI GACGC 2 cut(s) 76, 85
Hin1I GRCGYC 1 cut(s) 96
Hin1II CATG 3 cut(s) 293, 473, 830
HinfI GANTC 1 cut(s) 607
HpaII CCGG 1 cut(s) 71
HphI GGTGA 1 cut(s) 293
Hpy188I TCNGA 5 cut(s) 419, 442, 457, 493, 778
Hpy188III TCNNGA 2 cut(s) 335, 611
HpyAV CCTTC 1 cut(s) 68
HpyCH4V TGCA 9 cut(s) 11, 29, 158, 476, 575, 597, 626, 676, 818
HpyF10VI GCNNNNNNNGC 3 cut(s) 93, 473, 840
HpyF3I CTNAG 4 cut(s) 91, 351, 555, 618
Hsp92I GRCGYC 1 cut(s) 96
Hsp92II CATG 3 cut(s) 293, 473, 830
Kzo9I GATC 4 cut(s) 144, 240, 325, 493
LguI GCTCTTC 1 cut(s) 279
Lsp1109I GCAGC 3 cut(s) 66, 559, 746
LweI GCATC 3 cut(s) 463, 613, 769
MaeI CTAG 5 cut(s) 209, 245, 312, 536, 569
MalI GATC 4 cut(s) 146, 242, 327, 495
MboI GATC 4 cut(s) 144, 240, 325, 493
MboII GAAGA 3 cut(s) 197, 296, 323
MflI RGATCY 2 cut(s) 240, 493
MhlI GDGCHC 2 cut(s) 469, 713
MlsI TGGCCA 1 cut(s) 427
MluCI AATT 4 cut(s) 18, 188, 338, 697
MluNI TGGCCA 1 cut(s) 427
MlyI GAGTC 1 cut(s) 616
MmeI TCCRAC 1 cut(s) 756
MnlI CCTC 5 cut(s) 224, 339, 413, 573, 774
Mox20I TGGCCA 1 cut(s) 427
Mph1103I ATGCAT 2 cut(s) 160, 628
MroXI GAANNNNTTC 1 cut(s) 342
MscI TGGCCA 1 cut(s) 427
MseI TTAA 5 cut(s) 183, 237, 275, 486, 666
MslI CAYNNNNRTG 1 cut(s) 71
Msp20I TGGCCA 1 cut(s) 427
MspA1I CMGCKG 1 cut(s) 796
MspCI CTTAAG 1 cut(s) 485
MspI CCGG 1 cut(s) 71
MspR9I CCNGG 1 cut(s) 368
Mva1269I GAATGC 1 cut(s) 160
MvaI CCWGG 1 cut(s) 368
MwoI GCNNNNNNNGC 3 cut(s) 93, 473, 840
NdeII GATC 4 cut(s) 144, 240, 325, 493
NlaIII CATG 3 cut(s) 293, 473, 830
NsiI ATGCAT 2 cut(s) 160, 628
PceI AGGCCT 1 cut(s) 213
PciSI GCTCTTC 1 cut(s) 279
PctI GAATGC 1 cut(s) 160
PdmI GAANNNNTTC 1 cut(s) 342
PkrI GCNGC 4 cut(s) 81, 574, 761, 836
PleI GAGTC 1 cut(s) 615
PpsI GAGTC 1 cut(s) 615
PshAI GACNNNNGTC 1 cut(s) 507
Psp6I CCWGG 1 cut(s) 366
PspGI CCWGG 1 cut(s) 366
PspPI GGNCC 1 cut(s) 40
PsrI GAACNNNNNNTAC 2 cut(s) 535, 567
PsuI RGATCY 2 cut(s) 240, 493
PvuII CAGCTG 1 cut(s) 796
RseI CAYNNNNRTG 1 cut(s) 71
SapI GCTCTTC 1 cut(s) 279
SaqAI TTAA 5 cut(s) 183, 237, 275, 486, 666
SatI GCNGC 4 cut(s) 80, 573, 760, 835
Sau3AI GATC 4 cut(s) 144, 240, 325, 493
Sau96I GGNCC 1 cut(s) 40
SchI GAGTC 1 cut(s) 616
ScrFI CCNGG 1 cut(s) 368
SduI GDGCHC 2 cut(s) 469, 713
SetI ASST 7 cut(s) 364, 385, 567, 574, 603, 682, 798
SfaNI GCATC 3 cut(s) 463, 613, 769
SfcI CTRYAG 1 cut(s) 838
SinI GGWCC 1 cut(s) 40
SmiMI CAYNNNNRTG 1 cut(s) 71
SmlI CTYRAG 1 cut(s) 485
SmoI CTYRAG 1 cut(s) 485
Sse9I AATT 4 cut(s) 18, 188, 338, 697
SseBI AGGCCT 1 cut(s) 213
SsiI CCGC 2 cut(s) 50, 835
SspMI CTAG 5 cut(s) 209, 245, 312, 536, 569
StuI AGGCCT 1 cut(s) 213
StyD4I CCNGG 1 cut(s) 366
TasI AATT 4 cut(s) 18, 188, 338, 697
TauI GCSGC 1 cut(s) 837
Tru1I TTAA 5 cut(s) 183, 237, 275, 486, 666
Tru9I TTAA 5 cut(s) 183, 237, 275, 486, 666
TscAI CASTG 6 cut(s) 36, 313, 359, 469, 748, 825
TseI GCWGC 3 cut(s) 79, 572, 759
TspDTI ATGAA 3 cut(s) 50, 306, 815
TspGWI ACGGA 1 cut(s) 497
TspRI CASTG 6 cut(s) 36, 313, 359, 469, 748, 825
Vha464I CTTAAG 1 cut(s) 485
VpaK11BI GGWCC 1 cut(s) 40
XapI RAATTY 1 cut(s) 18
XmnI GAANNNNTTC 1 cut(s) 342
XspI CTAG 5 cut(s) 209, 245, 312, 536, 569
Zsp2I ATGCAT 2 cut(s) 160, 628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.