Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001488

Physical Location & Seq

Genomic Coordinates Forward (+)

23405337 .. 23410489

Gene Structure 5153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023423

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGCGATTGCAGCGGCAGCTGTCATCGTTCCACTCGGCCTCCTCTTCTTCCTCTCTGGCCTCTTTGTCAATCTCCTTCAGGCGATTTGCTTCGTTCTTATTCGGCCTGTGTCAAAGAATATATACAGAAGAATCAACAGAGTGCTGGCAGAGCTGCTGTGGCTGGAGCTCGTTTGGATCATAGATTGGTGGGCAGGCGTCAAGATCAAAGTGTACACAGACCCTGAAACCTTCCATTTAATGGGTAAAGAACATGCACTTGTCATATGCAATCACAAAAGTGATATTGATTGGCTTGTTGGATGGGTTCTAGCTCAGCGGTCAGGTTGCCTTGGCAGCTCATTAGCTGTAATGAAGAAATCATCCAAATTTCTTCCGGTAATAGGGTGGTCAATGTGGTTTTCTGAATATCTCTTTTTGGAAAGAAGCTGGGCAAAAGATGAAAGCACAATAAAGTCAGGTATTCAACGGCTGAAGGACTACCCTCAGCCCTTTTGGTTAGCTCTTTTTGTAGAAGGAACTCGTTTTACACAGGCAAAGCTTTTGGCAGCACAGGAATATGCCGCCTCAACAGGGCTATCTGTCCCTAGAAATGTTTTGATTCCTCGCACTAAGGGTTTTGTCTCAGCAGTAAGTCACATGCGCTCATTTGTTCCAGCTGTATATGATATAACGGTGGCTATTCCTAAAAGTTCACCTGCACCTACAATGCTAAGACTGTTTGAGGGGCGACCGTCTGTGGTAAGCTTACTCTACATAGATCTTCAAAATGGCTATTGTAGTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003841 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008374 GO:0012505 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0042171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071617

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04072 map00561 map00564 map01100 map01110 map04072

Pfam Domains

Protein Families

Acyltransf_C Acyltransferase

Protein Analysis

263

Amino Acids

29.47

Weight (kDa)

9.47

Isoelectric Point (pI)

38.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyltransferase	PF01553	83 - 228	2.6e-15	Acyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57650
fragaria_vesca	FvH4_6g23240 FvH4_6g23240 FvH4_6g23240 FvH4_6g36950 FvH4_6g36960 FvH4_6g36962
malus_domestica	MD12G1066700.v1.1 MD14G1067300.v1.1
prunus_persica	Prupe.7G067600_v2.0.a1
pyrus_communis	pycom12g05810 pycom14g05530
rosa_chinensis	RchiOBHm_Chr2g0149391 RchiOBHm_Chr2g0149421 RchiOBHm_Chr2g0149441 RchiOBHm_Chr2g0149461 RchiOBHm_Chr2g0149471 RchiOBHm_Chr3g0481071
rosa_laevigata	RLG00000020324 RLG00000020404 RLG00000020406 RLG00000020407 RLG00000023423
rosa_multiflora	Rmu_co8437371.1_g000001 Rmu_sc0000873.1_g000022 Rmu_sc0000873.1_g000026 Rmu_sc0000873.1_g000027 Rmu_sc0000873.1_g000029 Rmu_sc0001551.1_g000024 Rmu_sc0002187.1_g000054
rosa_roxburghii	Rroxscaffold_2G00098120 Rroxscaffold_2G00098130 Rroxscaffold_6G00400660
rosa_rugosa	Rorug03G0190000 Rorug03G0190100 Rorug04G0357400 Rorug04G0357500 Rorug04G0357600
rosa_samantha	Rh3AG240300 Rh3BG276000 Rh3CG271300 Rh3DG267300 Rh5BG363100
rosa_wichuraiana	Rw2G038400 Rw2G038410 Rw2G038420 Rw2G038430 Rw2G038440 Rw2G038450 Rw3G021460 Rw6G011250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	706
Acc36I	ACCTGC	1 cut(s)	706
AccB7I	CCANNNNNTGG	1 cut(s)	241
AciI	CCGC	3 cut(s)	14, 319, 564
AclWI	GGATC	1 cut(s)	185
AcsI	RAATTY	1 cut(s)	368
AcuI	CTGAAG	2 cut(s)	62, 494
AcyI	GRCGYC	1 cut(s)	198
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	3 cut(s)	241, 383, 573
AgsI	TTSAA	2 cut(s)	467, 767
AleI	CACNNNNGTG	1 cut(s)	279
Alw21I	GWGCWC	1 cut(s)	171
Alw26I	GTCTC	1 cut(s)	628
AlwI	GGATC	1 cut(s)	185
AlwNI	CAGNNNCTG	1 cut(s)	224
AoxI	GGCC	3 cut(s)	37, 58, 104
ApeKI	GCWGC	5 cut(s)	11, 17, 154, 336, 548
ApoI	RAATTY	1 cut(s)	368
AspLEI	GCGC	1 cut(s)	645
AsuHPI	GGTGA	1 cut(s)	687
BanII	GRGCYC	1 cut(s)	171
Bbv12I	GWGCWC	1 cut(s)	171
BbvCI	CCTCAGC	1 cut(s)	486
BbvI	GCAGC	5 cut(s)	23, 29, 141, 348, 560
BccI	CCATC	1 cut(s)	297
BceAI	ACGGC	1 cut(s)	485
BcoDI	GTCTC	1 cut(s)	628
BfaI	CTAG	2 cut(s)	311, 588
BfuAI	ACCTGC	1 cut(s)	706
BglII	AGATCT	1 cut(s)	760
BisI	GCNGC	7 cut(s)	12, 15, 18, 155, 337, 549, 564
BlpI	GCTNAGC	1 cut(s)	315
BlsI	GCNGC	7 cut(s)	13, 16, 19, 156, 338, 550, 565
BpmI	CTGGAG	1 cut(s)	185
Bpu10I	CCTNAGC	1 cut(s)	486
Bpu1102I	GCTNAGC	1 cut(s)	315
BsaHI	GRCGYC	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	331
BsaWI	WCCGGW	1 cut(s)	376
BsaXI	ACNNNNNCTCC	2 cut(s)	24, 54
Bsc4I	CCNNNNNNNGG	3 cut(s)	241, 383, 573
BseDI	CCNNGG	1 cut(s)	331
BseGI	GGATG	2 cut(s)	308, 362
BseLI	CCNNNNNNNGG	3 cut(s)	241, 383, 573
BseMII	CTCAG	3 cut(s)	329, 500, 639
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	5 cut(s)	23, 29, 141, 348, 560
BseYI	CCCAGC	1 cut(s)	429
BsgI	GTGCAG	1 cut(s)	684
Bsh1285I	CGRYCG	1 cut(s)	734
BshFI	GGCC	3 cut(s)	39, 60, 106
BsiEI	CGRYCG	1 cut(s)	734
BsiHKAI	GWGCWC	1 cut(s)	171
BsiSI	CCGG	1 cut(s)	377
BslFI	GGGAC	1 cut(s)	569
BslI	CCNNNNNNNGG	3 cut(s)	241, 383, 573
BsmAI	GTCTC	1 cut(s)	628
BsmFI	GGGAC	1 cut(s)	569
BsnI	GGCC	3 cut(s)	39, 60, 106
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp1407I	TGTACA	1 cut(s)	213
Bsp143I	GATC	3 cut(s)	177, 204, 760
Bsp1720I	GCTNAGC	1 cut(s)	315
BspACI	CCGC	3 cut(s)	14, 319, 564
BspANI	GGCC	3 cut(s)	39, 60, 106
BspCNI	CTCAG	3 cut(s)	328, 499, 638
BspMI	ACCTGC	1 cut(s)	706
BspPI	GGATC	1 cut(s)	185
BsrGI	TGTACA	1 cut(s)	213
BssECI	CCNNGG	1 cut(s)	331
BssMI	GATC	3 cut(s)	177, 204, 760
BssNI	GRCGYC	1 cut(s)	198
BssT1I	CCWWGG	1 cut(s)	331
Bst4CI	ACNGT	3 cut(s)	676, 720, 735
Bst6I	CTCTTC	1 cut(s)	50
BstACI	GRCGYC	1 cut(s)	198
BstAUI	TGTACA	1 cut(s)	213
BstC8I	GCNNGC	2 cut(s)	147, 196
BstDEI	CTNAG	5 cut(s)	315, 486, 612, 625, 713
BstF5I	GGATG	2 cut(s)	308, 362
BstHHI	GCGC	1 cut(s)	645
BstKTI	GATC	3 cut(s)	180, 207, 763
BstMAI	GTCTC	1 cut(s)	628
BstMBI	GATC	3 cut(s)	177, 204, 760
BstMCI	CGRYCG	1 cut(s)	734
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 17, 151, 160, 336
BstNSI	RCATGY	2 cut(s)	257, 643
BstV1I	GCAGC	5 cut(s)	23, 29, 141, 348, 560
BstX2I	RGATCY	1 cut(s)	760
BstYI	RGATCY	1 cut(s)	760
BsuRI	GGCC	3 cut(s)	39, 60, 106
BtsCI	GGATG	2 cut(s)	308, 362
BveI	ACCTGC	1 cut(s)	706
Cac8I	GCNNGC	2 cut(s)	147, 196
CaiI	CAGNNNCTG	1 cut(s)	224
CfoI	GCGC	1 cut(s)	645
CseI	GACGC	1 cut(s)	187
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	2 cut(s)	254, 640
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	5 cut(s)	315, 486, 612, 625, 713
DpnI	GATC	3 cut(s)	179, 206, 762
DpnII	GATC	3 cut(s)	177, 204, 760
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
Ecl136II	GAGCTC	1 cut(s)	169
Eco130I	CCWWGG	1 cut(s)	331
Eco24I	GRGCYC	1 cut(s)	171
Eco53kI	GAGCTC	1 cut(s)	169
Eco57I	CTGAAG	2 cut(s)	62, 494
EcoICRI	GAGCTC	1 cut(s)	169
EcoT14I	CCWWGG	1 cut(s)	331
EcoT38I	GRGCYC	1 cut(s)	171
ErhI	CCWWGG	1 cut(s)	331
FaeI	CATG	2 cut(s)	257, 643
FaqI	GGGAC	1 cut(s)	569
FatI	CATG	2 cut(s)	253, 639
FauNDI	CATATG	1 cut(s)	266
Fnu4HI	GCNGC	7 cut(s)	12, 15, 18, 155, 337, 549, 564
FokI	GGATG	2 cut(s)	315, 349
FriOI	GRGCYC	1 cut(s)	171
Fsp4HI	GCNGC	7 cut(s)	12, 15, 18, 155, 337, 549, 564
FspBI	CTAG	2 cut(s)	311, 588
GlaI	GCGC	1 cut(s)	644
GluI	GCNGC	7 cut(s)	12, 15, 18, 155, 337, 549, 564
GsaI	CCCAGC	1 cut(s)	433
GsuI	CTGGAG	1 cut(s)	185
HaeIII	GGCC	3 cut(s)	39, 60, 106
HapII	CCGG	1 cut(s)	377
HgaI	GACGC	1 cut(s)	187
HhaI	GCGC	1 cut(s)	645
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	2 cut(s)	257, 643
Hin6I	GCGC	1 cut(s)	643
HinP1I	GCGC	1 cut(s)	643
HindIII	AAGCTT	2 cut(s)	539, 745
HinfI	GANTC	2 cut(s)	132, 601
HpaII	CCGG	1 cut(s)	377
HphI	GGTGA	1 cut(s)	687
Hpy166II	GTNNAC	3 cut(s)	214, 216, 695
Hpy188I	TCNGA	1 cut(s)	406
Hpy188III	TCNNGA	1 cut(s)	202
Hpy8I	GTNNAC	3 cut(s)	214, 216, 695
HpyAV	CCTTC	4 cut(s)	86, 241, 469, 509
HpyCH4III	ACNGT	3 cut(s)	676, 720, 735
HpyCH4V	TGCA	4 cut(s)	11, 257, 270, 701
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 17, 151, 160, 336
HpyF3I	CTNAG	5 cut(s)	315, 486, 612, 625, 713
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	2 cut(s)	257, 643
HspAI	GCGC	1 cut(s)	643
Kzo9I	GATC	3 cut(s)	177, 204, 760
LmnI	GCTCC	1 cut(s)	166
Lsp1109I	GCAGC	5 cut(s)	23, 29, 141, 348, 560
MaeI	CTAG	2 cut(s)	311, 588
MaeIII	GTNAC	1 cut(s)	635
MalI	GATC	3 cut(s)	179, 206, 762
MboI	GATC	3 cut(s)	177, 204, 760
MboII	GAAGA	6 cut(s)	37, 40, 141, 365, 367, 755
MflI	RGATCY	1 cut(s)	760
MhlI	GDGCHC	1 cut(s)	171
MluCI	AATT	1 cut(s)	368
MmeI	TCCRAC	1 cut(s)	280
MnlI	CCTC	8 cut(s)	50, 53, 62, 71, 495, 577, 615, 718
MseI	TTAA	1 cut(s)	239
MslI	CAYNNNNRTG	1 cut(s)	279
MspA1I	CMGCKG	4 cut(s)	14, 20, 319, 659
MspI	CCGG	1 cut(s)	377
MwoI	GCNNNNNNNGC	5 cut(s)	11, 17, 151, 160, 336
NdeI	CATATG	1 cut(s)	266
NdeII	GATC	3 cut(s)	177, 204, 760
NlaIII	CATG	2 cut(s)	257, 643
NmeAIII	GCCGAG	1 cut(s)	15
NmuCI	GTSAC	1 cut(s)	635
NspI	RCATGY	2 cut(s)	257, 643
OliI	CACNNNNGTG	1 cut(s)	279
PaqCI	CACCTGC	1 cut(s)	706
PfeI	GAWTC	2 cut(s)	132, 601
PflMI	CCANNNNNTGG	1 cut(s)	241
PkrI	GCNGC	7 cut(s)	13, 16, 19, 156, 338, 550, 565
Psp124BI	GAGCTC	1 cut(s)	171
PspFI	CCCAGC	1 cut(s)	429
PsrI	GAACNNNNNNTAC	2 cut(s)	511, 543
PstNI	CAGNNNCTG	1 cut(s)	224
PsuI	RGATCY	1 cut(s)	760
PvuII	CAGCTG	2 cut(s)	20, 659
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
RseI	CAYNNNNRTG	1 cut(s)	279
SacI	GAGCTC	1 cut(s)	171
SaqAI	TTAA	1 cut(s)	239
SatI	GCNGC	7 cut(s)	12, 15, 18, 155, 337, 549, 564
Sau3AI	GATC	3 cut(s)	177, 204, 760
SduI	GDGCHC	1 cut(s)	171
SmiMI	CAYNNNNRTG	1 cut(s)	279
Sse9I	AATT	1 cut(s)	368
SsiI	CCGC	3 cut(s)	14, 319, 564
SspMI	CTAG	2 cut(s)	311, 588
SstI	GAGCTC	1 cut(s)	171
StyI	CCWWGG	1 cut(s)	331
TaaI	ACNGT	3 cut(s)	676, 720, 735
TasI	AATT	1 cut(s)	368
TatI	WGTACW	1 cut(s)	213
TauI	GCSGC	2 cut(s)	17, 566
TfiI	GAWTC	2 cut(s)	132, 601
Tru1I	TTAA	1 cut(s)	239
Tru9I	TTAA	1 cut(s)	239
TseFI	GTSAC	1 cut(s)	635
TseI	GCWGC	5 cut(s)	11, 17, 154, 336, 548
Tsp45I	GTSAC	1 cut(s)	635
TspDTI	ATGAA	2 cut(s)	368, 456
Van91I	CCANNNNNTGG	1 cut(s)	241
XapI	RAATTY	1 cut(s)	368
XceI	RCATGY	2 cut(s)	257, 643
XspI	CTAG	2 cut(s)	311, 588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.