Rmu_sc0000873.1_g000026

1-acyl-sn-glycerol-3-phosphate acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000873.1
OG0001488
Physical Location & Seq
Forward (+)
108033 .. 112763
4731 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000873.1_g000026.1.cds

Sequence Viewer

Length: 1014 bp
atgcagtggtcaggttgccttggcattttatttgctgtaataaagacatcaacaaggtacattccgtcagatctaaaggacttccctcagcccttttggttatctgttgtccttgaaagaactggttttactcatggagagcttgtagctgcacagaggcttcctgtccctagcaagttttttagtcctgatactaaggatttggtctatgcagtaagacgtgcgtactctgctgttccagccatttatgttataacagtggctattcctaaaacttcacctccacctacacttgaaagtgtaattaaagggggaccttctgtggtgcatgcgtacgtcaagcggcatgcgactaaaaaatggcctgaaactgaagatgctgttgaaaagtggtgcacagaaatacttgcagccaagggtgcattattggatgaacatatagcagaacaaacttttggcaataaaggattgcaagctattggtcggccactaaagtgtttattggttgttatatctctaattgttttgggggctctaaagttccactttgtctgctgttccacactgcttgtattgagtgctgccctctttactggccggatgcttactctgttcggctgtggagtgctttcgctgttgcagtgtttcatggaagctgctatagcaaacattagttgcatttcggtcactggtcgccgaattccagtcatcagccaccagaatccagtcaccagctgccgctcaccggaattttctaaaaatttcaccggaaaggtcaagctcaagcaccaaatcccgctagagatgagttgcgattttgattccgtgatcggcgacttccgtcttcagcacgaactcactgccggcaggggatggcgcgaactccgagctagttgcacgaaccggaactctgagcttgtctccgactgtacgattgatggcgccaactgcacgaactcgctgccgtcttctgggttgcacaaactcgttgccgactgcaagagcgccagctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko00564 ko01100 ko01110 ko04072 map00561 map00564 map01100 map01110 map04072
Pfam Domains
Protein Families
Acyltransf_C Acyltransferase

Protein Analysis

337

Amino Acids

36.79

Weight (kDa)

8.9

Isoelectric Point (pI)

47.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 254
AccB1I GGYRCC 1 cut(s) 941
AccBSI CCGCTC 1 cut(s) 741
AccII CGCG 1 cut(s) 879
AciI CCGC 3 cut(s) 343, 739, 797
AcoI YGGCCR 2 cut(s) 485, 595
AcsI RAATTY 3 cut(s) 699, 749, 760
AcuI CTGAAG 2 cut(s) 393, 830
AcyI GRCGYC 1 cut(s) 942
AfaI GTAC 4 cut(s) 59, 227, 335, 931
AfiI CCNNNNNNNGG 2 cut(s) 745, 971
AgsI TTSAA 3 cut(s) 116, 296, 386
AjiI CACGTC 1 cut(s) 221
AjuI GAANNNNNNNTTGG 2 cut(s) 438, 470
AleI CACNNNNGTG 1 cut(s) 493
AluBI AGCT 9 cut(s) 142, 149, 476, 656, 735, 781, 890, 916, 1011
AluI AGCT 9 cut(s) 142, 149, 476, 656, 735, 781, 890, 916, 1011
Alw21I GWGCWC 1 cut(s) 398
Alw26I GTCTC 1 cut(s) 925
Alw44I GTGCAC 1 cut(s) 394
AoxI GGCC 3 cut(s) 362, 485, 595
ApaLI GTGCAC 1 cut(s) 394
ApeKI GCWGC 6 cut(s) 149, 410, 581, 656, 735, 961
ApoI RAATTY 3 cut(s) 699, 749, 760
AspLEI GCGC 3 cut(s) 879, 944, 1007
AspS9I GGNCC 1 cut(s) 314
AsuHPI GGTGA 4 cut(s) 270, 721, 735, 757
AvaII GGWCC 1 cut(s) 314
BaeGI GKGCMC 1 cut(s) 398
BanI GGYRCC 1 cut(s) 941
BanII GRGCYC 1 cut(s) 535
BbsI GAAGAC 2 cut(s) 836, 960
Bbv12I GWGCWC 1 cut(s) 398
BbvCI CCTCAGC 1 cut(s) 87
BbvI GCAGC 6 cut(s) 136, 422, 568, 643, 722, 948
BccI CCATC 2 cut(s) 867, 932
BceAI ACGGC 1 cut(s) 949
BcgI CGANNNNNNTGC 6 cut(s) 842, 876, 876, 910, 943, 977
BcoDI GTCTC 1 cut(s) 925
BfaI CTAG 3 cut(s) 171, 800, 891
BfmI CTRYAG 1 cut(s) 660
BfoI RGCGCY 2 cut(s) 945, 1008
BglII AGATCT 1 cut(s) 70
BisI GCNGC 8 cut(s) 150, 344, 411, 582, 657, 736, 739, 962
BlsI GCNGC 8 cut(s) 151, 345, 412, 583, 658, 737, 740, 963
Bme18I GGWCC 1 cut(s) 314
BmgBI CACGTC 1 cut(s) 221
BmgT120I GGNCC 1 cut(s) 314
BmiI GGNNCC 2 cut(s) 315, 943
BmsI GCATC 2 cut(s) 367, 591
BoxI GACNNNNGTC 1 cut(s) 840
BpiI GAAGAC 2 cut(s) 836, 960
BplI GAGNNNNNCTC 2 cut(s) 905, 937
Bpu10I CCTNAGC 1 cut(s) 87
BpuEI CTTGAG 1 cut(s) 767
BsaHI GRCGYC 1 cut(s) 942
BsaJI CCNNGG 2 cut(s) 19, 414
BsaWI WCCGGW 3 cut(s) 745, 767, 903
BsaXI ACNNNNNCTCC 4 cut(s) 129, 159, 265, 295
Bsc4I CCNNNNNNNGG 2 cut(s) 745, 971
Bse118I RCCGGY 1 cut(s) 863
Bse1I ACTGG 5 cut(s) 127, 598, 694, 704, 725
BseDI CCNNGG 2 cut(s) 19, 414
BseGI GGATG 3 cut(s) 436, 606, 878
BseLI CCNNNNNNNGG 2 cut(s) 745, 971
BseMII CTCAG 2 cut(s) 101, 903
BseNI ACTGG 5 cut(s) 127, 598, 694, 704, 725
BseSI GKGCMC 1 cut(s) 398
BseXI GCAGC 6 cut(s) 136, 422, 568, 643, 722, 948
BsgI GTGCAG 2 cut(s) 135, 934
Bsh1236I CGCG 1 cut(s) 879
BshFI GGCC 3 cut(s) 364, 487, 597
BshNI GGYRCC 1 cut(s) 941
BsiHKAI GWGCWC 1 cut(s) 398
BsiSI CCGG 5 cut(s) 598, 746, 768, 864, 904
BsiWI CGTACG 1 cut(s) 333
BslFI GGGAC 2 cut(s) 152, 327
BslI CCNNNNNNNGG 2 cut(s) 745, 971
BsmAI GTCTC 1 cut(s) 925
BsmFI GGGAC 2 cut(s) 152, 327
BsnI GGCC 3 cut(s) 364, 487, 597
Bsp1286I GDGCHC 2 cut(s) 398, 535
Bsp143I GATC 2 cut(s) 70, 828
BspACI CCGC 3 cut(s) 343, 739, 797
BspANI GGCC 3 cut(s) 364, 487, 597
BspCNI CTCAG 2 cut(s) 100, 904
BspFNI CGCG 1 cut(s) 879
BspLI GGNNCC 2 cut(s) 315, 943
BspT107I GGYRCC 1 cut(s) 941
BsrBI CCGCTC 1 cut(s) 741
BsrFI RCCGGY 1 cut(s) 863
BsrI ACTGG 5 cut(s) 127, 598, 694, 704, 725
BssAI RCCGGY 1 cut(s) 863
BssECI CCNNGG 2 cut(s) 19, 414
BssMI GATC 2 cut(s) 70, 828
BssNI GRCGYC 1 cut(s) 942
BssT1I CCWWGG 2 cut(s) 19, 414
Bst4CI ACNGT 2 cut(s) 259, 929
BstACI GRCGYC 1 cut(s) 942
BstC8I GCNNGC 5 cut(s) 330, 348, 474, 865, 1009
BstDEI CTNAG 3 cut(s) 87, 195, 912
BstF5I GGATG 3 cut(s) 436, 606, 878
BstFNI CGCG 1 cut(s) 879
BstH2I RGCGCY 2 cut(s) 945, 1008
BstHHI GCGC 3 cut(s) 879, 944, 1007
BstKTI GATC 2 cut(s) 73, 831
BstMAI GTCTC 1 cut(s) 925
BstMBI GATC 2 cut(s) 70, 828
BstMWI GCNNNNNNNGC 5 cut(s) 230, 239, 419, 662, 948
BstNSI RCATGY 2 cut(s) 332, 350
BstPAI GACNNNNGTC 1 cut(s) 840
BstSFI CTRYAG 1 cut(s) 660
BstSLI GKGCMC 1 cut(s) 398
BstUI CGCG 1 cut(s) 879
BstV1I GCAGC 6 cut(s) 136, 422, 568, 643, 722, 948
BstV2I GAAGAC 2 cut(s) 836, 960
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
BsuRI GGCC 3 cut(s) 364, 487, 597
BtrI CACGTC 1 cut(s) 221
BtsCI GGATG 3 cut(s) 436, 606, 878
BtsI GCAGTG 4 cut(s) 11, 563, 647, 858
BtsIMutI CAGTG 6 cut(s) 11, 264, 563, 647, 687, 858
Cac8I GCNNGC 5 cut(s) 330, 348, 474, 865, 1009
CfoI GCGC 3 cut(s) 879, 944, 1007
Cfr10I RCCGGY 1 cut(s) 863
Cfr13I GGNCC 1 cut(s) 314
Csp6I GTAC 4 cut(s) 58, 226, 334, 930
CspCI CAANNNNNGTGG 2 cut(s) 550, 585
CviAII CATG 4 cut(s) 134, 329, 347, 649
CviQI GTAC 4 cut(s) 58, 226, 334, 930
DdeI CTNAG 3 cut(s) 87, 195, 912
DinI GGCGCC 1 cut(s) 943
DpnI GATC 2 cut(s) 72, 830
DpnII GATC 2 cut(s) 70, 828
EaeI YGGCCR 2 cut(s) 485, 595
Eco130I CCWWGG 2 cut(s) 19, 414
Eco24I GRGCYC 1 cut(s) 535
Eco47I GGWCC 1 cut(s) 314
Eco57I CTGAAG 2 cut(s) 393, 830
EcoO109I RGGNCCY 1 cut(s) 314
EcoRI GAATTC 1 cut(s) 699
EcoT14I CCWWGG 2 cut(s) 19, 414
EcoT38I GRGCYC 1 cut(s) 535
EgeI GGCGCC 1 cut(s) 943
EheI GGCGCC 1 cut(s) 943
ErhI CCWWGG 2 cut(s) 19, 414
FaeI CATG 4 cut(s) 137, 332, 350, 652
FalI AAGNNNNNCTT 2 cut(s) 530, 562
FaqI GGGAC 2 cut(s) 152, 327
FatI CATG 4 cut(s) 133, 328, 346, 648
FauI CCCGC 1 cut(s) 804
Fnu4HI GCNGC 8 cut(s) 150, 344, 411, 582, 657, 736, 739, 962
FokI GGATG 3 cut(s) 443, 613, 885
FriOI GRGCYC 1 cut(s) 535
Fsp4HI GCNGC 8 cut(s) 150, 344, 411, 582, 657, 736, 739, 962
FspBI CTAG 3 cut(s) 171, 800, 891
GlaI GCGC 3 cut(s) 878, 943, 1006
GluI GCNGC 8 cut(s) 150, 344, 411, 582, 657, 736, 739, 962
HaeII RGCGCY 2 cut(s) 945, 1008
HaeIII GGCC 3 cut(s) 364, 487, 597
HapII CCGG 5 cut(s) 598, 746, 768, 864, 904
HhaI GCGC 3 cut(s) 879, 944, 1007
Hin1I GRCGYC 1 cut(s) 942
Hin1II CATG 4 cut(s) 137, 332, 350, 652
Hin6I GCGC 3 cut(s) 877, 942, 1005
HinP1I GCGC 3 cut(s) 877, 942, 1005
HinfI GANTC 2 cut(s) 721, 821
HpaII CCGG 5 cut(s) 598, 746, 768, 864, 904
HphI GGTGA 4 cut(s) 270, 721, 735, 757
Hpy166II GTNNAC 1 cut(s) 396
Hpy188I TCNGA 4 cut(s) 70, 887, 913, 925
Hpy188III TCNNGA 1 cut(s) 188
Hpy8I GTNNAC 1 cut(s) 396
HpyAV CCTTC 1 cut(s) 327
HpyCH4III ACNGT 2 cut(s) 259, 929
HpyCH4IV ACGT 2 cut(s) 220, 336
HpyF10VI GCNNNNNNNGC 5 cut(s) 230, 239, 419, 662, 948
HpyF3I CTNAG 3 cut(s) 87, 195, 912
HpySE526I ACGT 2 cut(s) 220, 336
Hsp92I GRCGYC 1 cut(s) 942
Hsp92II CATG 4 cut(s) 137, 332, 350, 652
HspAI GCGC 3 cut(s) 877, 942, 1005
KasI GGCGCC 1 cut(s) 941
KroI GCCGGC 1 cut(s) 863
KroNI GCCGGC 1 cut(s) 865
Kzo9I GATC 2 cut(s) 70, 828
Lsp1109I GCAGC 6 cut(s) 136, 422, 568, 643, 722, 948
LweI GCATC 2 cut(s) 367, 591
MaeI CTAG 3 cut(s) 171, 800, 891
MaeII ACGT 2 cut(s) 220, 336
MaeIII GTNAC 2 cut(s) 685, 727
MalI GATC 2 cut(s) 72, 830
MbiI CCGCTC 1 cut(s) 741
MboI GATC 2 cut(s) 70, 828
MboII GAAGA 3 cut(s) 386, 836, 960
MflI RGATCY 1 cut(s) 70
MhlI GDGCHC 2 cut(s) 398, 535
MluCI AATT 5 cut(s) 303, 519, 699, 749, 760
Mly113I GGCGCC 1 cut(s) 942
MmeI TCCRAC 1 cut(s) 948
MnlI CCTC 4 cut(s) 96, 150, 291, 596
MroNI GCCGGC 1 cut(s) 863
MseI TTAA 1 cut(s) 306
MslI CAYNNNNRTG 1 cut(s) 493
MspA1I CMGCKG 2 cut(s) 735, 1011
MspI CCGG 5 cut(s) 598, 746, 768, 864, 904
MvnI CGCG 1 cut(s) 879
MwoI GCNNNNNNNGC 5 cut(s) 230, 239, 419, 662, 948
NaeI GCCGGC 1 cut(s) 865
NarI GGCGCC 1 cut(s) 942
NdeII GATC 2 cut(s) 70, 828
NgoMIV GCCGGC 1 cut(s) 863
NlaIII CATG 4 cut(s) 137, 332, 350, 652
NlaIV GGNNCC 2 cut(s) 315, 943
NmuCI GTSAC 2 cut(s) 685, 727
NspI RCATGY 2 cut(s) 332, 350
OliI CACNNNNGTG 1 cut(s) 493
PaeI GCATGC 2 cut(s) 332, 350
PdiI GCCGGC 1 cut(s) 865
PfeI GAWTC 2 cut(s) 721, 821
Pfl23II CGTACG 1 cut(s) 333
PkrI GCNGC 8 cut(s) 151, 345, 412, 583, 658, 737, 740, 963
PluTI GGCGCC 1 cut(s) 945
PpuMI RGGWCCY 1 cut(s) 314
PshAI GACNNNNGTC 1 cut(s) 840
PsiI TTATAA 1 cut(s) 254
Psp5II RGGWCCY 1 cut(s) 314
PspLI CGTACG 1 cut(s) 333
PspN4I GGNNCC 2 cut(s) 315, 943
PspPI GGNCC 1 cut(s) 314
PspPPI RGGWCCY 1 cut(s) 314
PsrI GAACNNNNNNTAC 2 cut(s) 112, 144
PsuI RGATCY 1 cut(s) 70
PvuII CAGCTG 2 cut(s) 735, 1011
RsaI GTAC 4 cut(s) 59, 227, 335, 931
RsaNI GTAC 4 cut(s) 58, 226, 334, 930
RseI CAYNNNNRTG 1 cut(s) 493
SaqAI TTAA 1 cut(s) 306
SatI GCNGC 8 cut(s) 150, 344, 411, 582, 657, 736, 739, 962
Sau3AI GATC 2 cut(s) 70, 828
Sau96I GGNCC 1 cut(s) 314
SduI GDGCHC 2 cut(s) 398, 535
SfaNI GCATC 2 cut(s) 367, 591
SfcI CTRYAG 1 cut(s) 660
SfoI GGCGCC 1 cut(s) 943
SinI GGWCC 1 cut(s) 314
SmiMI CAYNNNNRTG 1 cut(s) 493
SmlI CTYRAG 1 cut(s) 782
SmoI CTYRAG 1 cut(s) 782
SphI GCATGC 2 cut(s) 332, 350
Sse9I AATT 5 cut(s) 303, 519, 699, 749, 760
SsiI CCGC 3 cut(s) 343, 739, 797
SspDI GGCGCC 1 cut(s) 941
SspMI CTAG 3 cut(s) 171, 800, 891
StyI CCWWGG 2 cut(s) 19, 414
TaaI ACNGT 2 cut(s) 259, 929
TaiI ACGT 2 cut(s) 223, 339
TaqII GACCGA 1 cut(s) 673
TasI AATT 5 cut(s) 303, 519, 699, 749, 760
TauI GCSGC 2 cut(s) 346, 741
TfiI GAWTC 2 cut(s) 721, 821
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TscAI CASTG 5 cut(s) 264, 570, 647, 694, 865
TseFI GTSAC 2 cut(s) 685, 727
TseI GCWGC 6 cut(s) 149, 410, 581, 656, 735, 961
Tsp45I GTSAC 2 cut(s) 685, 727
TspDTI ATGAA 2 cut(s) 447, 637
TspGWI ACGGA 3 cut(s) 54, 814, 830
TspRI CASTG 5 cut(s) 264, 570, 647, 694, 865
VneI GTGCAC 1 cut(s) 394
VpaK11BI GGWCC 1 cut(s) 314
XapI RAATTY 3 cut(s) 699, 749, 760
XceI RCATGY 2 cut(s) 332, 350
XspI CTAG 3 cut(s) 171, 800, 891
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.