RLG00000020406

1-acyl-sn-glycerol-3-phosphate acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001488
Physical Location & Seq
Forward (+)
64693316 .. 64697356
4041 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020406

Sequence Viewer

Length: 759 bp
ATGTCTGCACTGTATGTTGGATTTCTTTGGTGTAAAGAACATGAACTTGTCATATCAAATGCTAGGAGTGATGCCGATCATCTTGTTGAACTGGTTCTCATTCAGTGGTCAGGTTGCCTTGGCAGTTTATTTGCTGTAATAAAGACATCAACCAGGTACATTCCGGCCATAGGGTGGTCAATGCGGTTATCTGAATTTGGTTTTTCAAAAAGAAGTTGCGCCCGAGATGCAAGAAAACTTGAGTCAGATCTAAAGGACTTCCCTCAGCCCTTTTGGTTATCTGTTGTCCTAGAAAGAAGTGGTTTTACTTTTACTCAGGGAGAGCTTCTAGCTGCGCAGAGGCATCCTGTCCCCAGCAAGATTTTGAGTCCTGATACTAAGGATTTGGTCTATGTAGTAAGATGTGCGTACTCTGTTGTTCCGGCCATTTATGTTATAACGGTGCCTATTCCTAAAACTTCACCTCCACCTACACTTGAAAGTGTAATTAAAGGGGGACCTTCTGTGGTTGTTATATCTCTAATTCTGTTGGGGGCTCTAAAGTTCCACGTTGTCTACTGTTCCACCCTGCTTGTATTGAGTGCTGCCCTCTTTACTGGCCGGATGCTTACTCTGTTCGGCTGTGGAGTGCTTTCGCTGTTGCAGTGTTTCCTGGAAGCCGCTATAGCAAACATTAGTTGGGCAAAGCACCTCAAGCCCATCTGTGGCTGGTTGATTAATATTCTTGGAGACTTGCTTTTGTTACTCCCTTGTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko00564 ko01100 ko01110 ko04072 map00561 map00564 map01100 map01110 map04072
Pfam Domains
Protein Families
Acyltransf_C Acyltransferase

Protein Analysis

253

Amino Acids

27.69

Weight (kDa)

8.56

Isoelectric Point (pI)

40.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 437
Acc16I TGCGCA 1 cut(s) 336
AccB1I GGYRCC 1 cut(s) 442
AccB7I CCANNNNNTGG 1 cut(s) 174
AccI GTMKAC 1 cut(s) 555
AciI CCGC 2 cut(s) 184, 660
AcoI YGGCCR 3 cut(s) 165, 423, 598
AcsI RAATTY 1 cut(s) 194
AfaI GTAC 2 cut(s) 158, 410
AfiI CCNNNNNNNGG 3 cut(s) 170, 174, 704
AgsI TTSAA 3 cut(s) 89, 207, 479
AjnI CCWGG 2 cut(s) 152, 651
AluBI AGCT 2 cut(s) 325, 332
AluI AGCT 2 cut(s) 325, 332
Alw26I GTCTC 1 cut(s) 723
Ama87I CYCGRG 1 cut(s) 222
AoxI GGCC 3 cut(s) 165, 423, 598
ApeKI GCWGC 2 cut(s) 332, 584
ApoI RAATTY 1 cut(s) 194
AseI ATTAAT 1 cut(s) 717
Asp700I GAANNNNTTC 1 cut(s) 93
AspLEI GCGC 2 cut(s) 221, 337
AspS9I GGNCC 1 cut(s) 497
AsuHPI GGTGA 1 cut(s) 453
AvaI CYCGRG 1 cut(s) 222
AvaII GGWCC 1 cut(s) 497
BanI GGYRCC 1 cut(s) 442
BanII GRGCYC 1 cut(s) 538
BarI GAAGNNNNNNTAC 2 cut(s) 289, 321
BbvCI CCTCAGC 1 cut(s) 264
BbvI GCAGC 2 cut(s) 319, 571
BccI CCATC 1 cut(s) 707
BciT130I CCWGG 2 cut(s) 154, 653
BcoDI GTCTC 1 cut(s) 723
BfaI CTAG 3 cut(s) 63, 290, 329
BfmI CTRYAG 1 cut(s) 663
BglII AGATCT 1 cut(s) 247
BisI GCNGC 3 cut(s) 333, 585, 660
BlsI GCNGC 3 cut(s) 334, 586, 661
Bme1390I CCNGG 2 cut(s) 154, 653
Bme18I GGWCC 1 cut(s) 497
BmeT110I CYCGRG 1 cut(s) 222
BmgT120I GGNCC 1 cut(s) 497
BmiI GGNNCC 2 cut(s) 444, 498
BmrFI CCNGG 2 cut(s) 154, 653
BmsI GCATC 4 cut(s) 61, 217, 352, 594
Bpu10I CCTNAGC 1 cut(s) 264
BpuEI CTTGAG 2 cut(s) 260, 677
BsaBI GATNNNNATC 1 cut(s) 75
BsaJI CCNNGG 1 cut(s) 118
BsaXI ACNNNNNCTCC 2 cut(s) 448, 478
Bsc4I CCNNNNNNNGG 3 cut(s) 170, 174, 704
Bse1I ACTGG 2 cut(s) 96, 601
Bse8I GATNNNNATC 1 cut(s) 75
BseBI CCWGG 2 cut(s) 154, 653
BseDI CCNNGG 1 cut(s) 118
BseGI GGATG 2 cut(s) 343, 609
BseJI GATNNNNATC 1 cut(s) 75
BseLI CCNNNNNNNGG 3 cut(s) 170, 174, 704
BseMII CTCAG 2 cut(s) 278, 329
BseNI ACTGG 2 cut(s) 96, 601
BseXI GCAGC 2 cut(s) 319, 571
BseYI CCCAGC 1 cut(s) 353
BshFI GGCC 3 cut(s) 167, 425, 600
BshNI GGYRCC 1 cut(s) 442
BsiHKCI CYCGRG 1 cut(s) 222
BsiSI CCGG 3 cut(s) 164, 422, 601
BslFI GGGAC 2 cut(s) 335, 510
BslI CCNNNNNNNGG 3 cut(s) 170, 174, 704
BsmAI GTCTC 1 cut(s) 723
BsmFI GGGAC 2 cut(s) 335, 510
BsnI GGCC 3 cut(s) 167, 425, 600
BsoBI CYCGRG 1 cut(s) 222
Bsp1286I GDGCHC 1 cut(s) 538
Bsp143I GATC 2 cut(s) 76, 247
BspACI CCGC 2 cut(s) 184, 660
BspANI GGCC 3 cut(s) 167, 425, 600
BspCNI CTCAG 2 cut(s) 277, 328
BspLI GGNNCC 2 cut(s) 444, 498
BspT107I GGYRCC 1 cut(s) 442
BsrI ACTGG 2 cut(s) 96, 601
BssECI CCNNGG 1 cut(s) 118
BssMI GATC 2 cut(s) 76, 247
BssT1I CCWWGG 1 cut(s) 118
Bst2UI CCWGG 2 cut(s) 154, 653
Bst4CI ACNGT 3 cut(s) 12, 442, 560
BstDEI CTNAG 3 cut(s) 264, 315, 378
BstF5I GGATG 2 cut(s) 343, 609
BstHHI GCGC 2 cut(s) 221, 337
BstKTI GATC 2 cut(s) 79, 250
BstMAI GTCTC 1 cut(s) 723
BstMBI GATC 2 cut(s) 76, 247
BstMWI GCNNNNNNNGC 3 cut(s) 227, 665, 694
BstNI CCWGG 2 cut(s) 154, 653
BstSCI CCNGG 2 cut(s) 152, 651
BstSFI CTRYAG 1 cut(s) 663
BstV1I GCAGC 2 cut(s) 319, 571
BstX2I RGATCY 1 cut(s) 247
BstYI RGATCY 1 cut(s) 247
BsuRI GGCC 3 cut(s) 167, 425, 600
BtsCI GGATG 2 cut(s) 343, 609
BtsI GCAGTG 1 cut(s) 650
BtsIMutI CAGTG 3 cut(s) 8, 110, 650
CfoI GCGC 2 cut(s) 221, 337
Cfr13I GGNCC 1 cut(s) 497
CsiI ACCWGGT 1 cut(s) 152
Csp6I GTAC 2 cut(s) 157, 409
CspCI CAANNNNNGTGG 2 cut(s) 553, 588
CviAII CATG 1 cut(s) 41
CviQI GTAC 2 cut(s) 157, 409
DdeI CTNAG 3 cut(s) 264, 315, 378
DpnI GATC 2 cut(s) 78, 249
DpnII GATC 2 cut(s) 76, 247
EaeI YGGCCR 3 cut(s) 165, 423, 598
Eco130I CCWWGG 1 cut(s) 118
Eco24I GRGCYC 1 cut(s) 538
Eco47I GGWCC 1 cut(s) 497
Eco88I CYCGRG 1 cut(s) 222
EcoO109I RGGNCCY 1 cut(s) 497
EcoRII CCWGG 2 cut(s) 152, 651
EcoT14I CCWWGG 1 cut(s) 118
EcoT38I GRGCYC 1 cut(s) 538
ErhI CCWWGG 1 cut(s) 118
FaeI CATG 1 cut(s) 44
FaiI YATR 9 cut(s) 15, 42, 53, 170, 393, 432, 437, 515, 665
FaqI GGGAC 2 cut(s) 335, 510
FatI CATG 1 cut(s) 40
FblI GTMKAC 1 cut(s) 555
Fnu4HI GCNGC 3 cut(s) 333, 585, 660
FokI GGATG 2 cut(s) 330, 616
FriOI GRGCYC 1 cut(s) 538
Fsp4HI GCNGC 3 cut(s) 333, 585, 660
FspBI CTAG 3 cut(s) 63, 290, 329
FspI TGCGCA 1 cut(s) 336
GlaI GCGC 2 cut(s) 220, 336
GluI GCNGC 3 cut(s) 333, 585, 660
GsaI CCCAGC 1 cut(s) 357
HaeIII GGCC 3 cut(s) 167, 425, 600
HapII CCGG 3 cut(s) 164, 422, 601
HhaI GCGC 2 cut(s) 221, 337
Hin1II CATG 1 cut(s) 44
Hin6I GCGC 2 cut(s) 219, 335
HinP1I GCGC 2 cut(s) 219, 335
HinfI GANTC 2 cut(s) 242, 367
HpaII CCGG 3 cut(s) 164, 422, 601
HphI GGTGA 1 cut(s) 453
Hpy166II GTNNAC 1 cut(s) 556
Hpy188I TCNGA 2 cut(s) 193, 247
Hpy188III TCNNGA 1 cut(s) 371
Hpy8I GTNNAC 1 cut(s) 556
HpyAV CCTTC 1 cut(s) 510
HpyCH4III ACNGT 3 cut(s) 12, 442, 560
HpyCH4IV ACGT 1 cut(s) 549
HpyCH4V TGCA 3 cut(s) 8, 230, 643
HpyF10VI GCNNNNNNNGC 3 cut(s) 227, 665, 694
HpyF3I CTNAG 3 cut(s) 264, 315, 378
HpySE526I ACGT 1 cut(s) 549
Hsp92II CATG 1 cut(s) 44
HspAI GCGC 2 cut(s) 219, 335
Kzo9I GATC 2 cut(s) 76, 247
Lsp1109I GCAGC 2 cut(s) 319, 571
LweI GCATC 4 cut(s) 61, 217, 352, 594
MabI ACCWGGT 1 cut(s) 152
MaeI CTAG 3 cut(s) 63, 290, 329
MaeII ACGT 1 cut(s) 549
MaeIII GTNAC 1 cut(s) 741
MalI GATC 2 cut(s) 78, 249
MboI GATC 2 cut(s) 76, 247
MflI RGATCY 1 cut(s) 247
MhlI GDGCHC 1 cut(s) 538
MluCI AATT 3 cut(s) 194, 486, 522
MlyI GAGTC 2 cut(s) 251, 376
MnlI CCTC 5 cut(s) 273, 333, 474, 599, 701
MroXI GAANNNNTTC 1 cut(s) 93
MseI TTAA 3 cut(s) 489, 717, 757
MspI CCGG 3 cut(s) 164, 422, 601
MspR9I CCNGG 2 cut(s) 154, 653
MvaI CCWGG 2 cut(s) 154, 653
MwoI GCNNNNNNNGC 3 cut(s) 227, 665, 694
NdeII GATC 2 cut(s) 76, 247
NlaIII CATG 1 cut(s) 44
NlaIV GGNNCC 2 cut(s) 444, 498
NsbI TGCGCA 1 cut(s) 336
PdmI GAANNNNTTC 1 cut(s) 93
PflMI CCANNNNNTGG 1 cut(s) 174
PfoI TCCNGGA 1 cut(s) 651
PkrI GCNGC 3 cut(s) 334, 586, 661
PleI GAGTC 2 cut(s) 250, 375
PpsI GAGTC 2 cut(s) 250, 375
PpuMI RGGWCCY 1 cut(s) 497
PshBI ATTAAT 1 cut(s) 717
PsiI TTATAA 1 cut(s) 437
Psp5II RGGWCCY 1 cut(s) 497
Psp6I CCWGG 2 cut(s) 152, 651
PspFI CCCAGC 1 cut(s) 353
PspGI CCWGG 2 cut(s) 152, 651
PspN4I GGNNCC 2 cut(s) 444, 498
PspPI GGNCC 1 cut(s) 497
PspPPI RGGWCCY 1 cut(s) 497
PsuI RGATCY 1 cut(s) 247
RsaI GTAC 2 cut(s) 158, 410
RsaNI GTAC 2 cut(s) 157, 409
SaqAI TTAA 3 cut(s) 489, 717, 757
SatI GCNGC 3 cut(s) 333, 585, 660
Sau3AI GATC 2 cut(s) 76, 247
Sau96I GGNCC 1 cut(s) 497
SchI GAGTC 2 cut(s) 251, 376
ScrFI CCNGG 2 cut(s) 154, 653
SduI GDGCHC 1 cut(s) 538
SetI ASST 9 cut(s) 115, 158, 327, 334, 466, 472, 502, 552, 693
SexAI ACCWGGT 1 cut(s) 152
SfaNI GCATC 4 cut(s) 61, 217, 352, 594
SfcI CTRYAG 1 cut(s) 663
SinI GGWCC 1 cut(s) 497
SmlI CTYRAG 2 cut(s) 239, 692
SmoI CTYRAG 2 cut(s) 239, 692
Sse9I AATT 3 cut(s) 194, 486, 522
SsiI CCGC 2 cut(s) 184, 660
SspI AATATT 1 cut(s) 721
SspMI CTAG 3 cut(s) 63, 290, 329
StyD4I CCNGG 2 cut(s) 152, 651
StyI CCWWGG 1 cut(s) 118
TaaI ACNGT 3 cut(s) 12, 442, 560
TaiI ACGT 1 cut(s) 552
TasI AATT 3 cut(s) 194, 486, 522
TauI GCSGC 1 cut(s) 662
Tru1I TTAA 3 cut(s) 489, 717, 757
Tru9I TTAA 3 cut(s) 489, 717, 757
TscAI CASTG 3 cut(s) 15, 110, 650
TseI GCWGC 2 cut(s) 332, 584
TspDTI ATGAA 1 cut(s) 57
TspRI CASTG 3 cut(s) 15, 110, 650
Van91I CCANNNNNTGG 1 cut(s) 174
VpaK11BI GGWCC 1 cut(s) 497
VspI ATTAAT 1 cut(s) 717
XapI RAATTY 1 cut(s) 194
XmiI GTMKAC 1 cut(s) 555
XmnI GAANNNNTTC 1 cut(s) 93
XspI CTAG 3 cut(s) 63, 290, 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.