Rmu_sc0000873.1_g000027

1-acyl-sn-glycerol-3-phosphate acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000873.1
OG0001488
Physical Location & Seq
Forward (+)
113292 .. 118691
5400 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000873.1_g000027.1.cds

Sequence Viewer

Length: 1125 bp
atggttttgcccatggcgattgcacttggaattctctttgcagtggtcgtggtcctttatccgctaatccttcatctcattccggtggtgctgctctgcgtctcaggcgtctttgccaatctggttcaggcgttttgctttgtttttatctggccgatctcaaagaatgcatacgcaaggataaacggcgtggttaaagaattggattggctggttctgctaggcctcattgattggtcaattttgttggagctcacccctgatacagccatctggtctcaagcagctcgagaagatccagatctgattgagctggctggcattgtatgtttggaattgagagggggacattttggtgaagagcatgaactagtcatatccagtgctagaaatgatgccgatcctcttcttgaattggttctcgctcagtggtcaggttgccttggcagtttattagctgtaataaagacatcagcaagatatattctggtcagagggtggccaatgtggttttctgaatatgttttttcggaaagaagtgcccatgatgcaagaaaacttaagtcagatctaaaggacttccctcagcccttttggttttctgttgtcctagaaagaactggttttactcagggagagcttctagctgcacagaggcttcctgtccctagcaaggttttgagtcctgatactaaggtgcatgtgtacattaaaaggcatgcgactaaaaaatggcctgaaactgatgatgctgttgaaaagtggtgcacagaaatacttgaagccgaggatgcattattggacgaacatatagcggaacgaacttttgttgttgaaggattgcaagctattggtcagccactaaagtgtttcttggttatatctctaattgtgttgtgggctctaaagttcaactttgtctgctgttccaccctgcttgtattgagtgctgccctctttactggtcagatgcttactctgttcggctgtggagttctttcgctgttgcaatgtttcatggaagccgctatagcaaacattagttggtcaaagtacctcaagcccatctgtggctggttgatttacaatcttggagagttgtgtttgttgctcccttgtgattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko00564 ko01100 ko01110 ko04072 map00561 map00564 map01100 map01110 map04072
Pfam Domains
Protein Families
Acyltransf_C Acyltransferase

Protein Analysis

374

Amino Acids

41.77

Weight (kDa)

5.17

Isoelectric Point (pI)

30.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 62, 815, 1026
AclWI GGATC 2 cut(s) 290, 395
AcoI YGGCCR 2 cut(s) 152, 500
AcsI RAATTY 1 cut(s) 30
AcyI GRCGYC 1 cut(s) 108
AfaI GTAC 2 cut(s) 707, 1055
AfiI CCNNNNNNNGG 2 cut(s) 673, 1070
AflII CTTAAG 1 cut(s) 560
AgsI TTSAA 5 cut(s) 413, 758, 782, 836, 913
AhlI ACTAGT 1 cut(s) 370
AjuI GAANNNNNNNTTGG 2 cut(s) 496, 528
AleI CACNNNNGTG 1 cut(s) 865
AluBI AGCT 7 cut(s) 253, 287, 313, 458, 640, 647, 848
AluI AGCT 7 cut(s) 253, 287, 313, 458, 640, 647, 848
Alw21I GWGCWC 2 cut(s) 255, 770
Alw26I GTCTC 2 cut(s) 106, 282
Alw44I GTGCAC 1 cut(s) 766
AlwI GGATC 2 cut(s) 290, 395
Ama87I CYCGRG 1 cut(s) 288
AoxI GGCC 4 cut(s) 152, 223, 500, 734
ApaLI GTGCAC 1 cut(s) 766
ApeKI GCWGC 4 cut(s) 91, 284, 647, 950
ApoI RAATTY 1 cut(s) 30
Asp700I GAANNNNTTC 1 cut(s) 417
AspS9I GGNCC 1 cut(s) 52
AsuHPI GGTGA 2 cut(s) 247, 368
AvaI CYCGRG 1 cut(s) 288
AvaII GGWCC 1 cut(s) 52
BaeGI GKGCMC 2 cut(s) 544, 770
BaeI ACNNNNGTAYC 2 cut(s) 681, 714
BalI TGGCCA 1 cut(s) 502
BanII GRGCYC 2 cut(s) 255, 904
Bbv12I GWGCWC 2 cut(s) 255, 770
BbvCI CCTCAGC 1 cut(s) 585
BbvI GCAGC 4 cut(s) 78, 296, 634, 937
BccI CCATC 2 cut(s) 278, 1073
BceAI ACGGC 1 cut(s) 202
BcoDI GTCTC 2 cut(s) 106, 282
BcuI ACTAGT 1 cut(s) 370
BfaI CTAG 6 cut(s) 221, 371, 387, 611, 644, 669
BfmI CTRYAG 1 cut(s) 1029
BfrI CTTAAG 1 cut(s) 560
BglII AGATCT 2 cut(s) 301, 568
BisI GCNGC 5 cut(s) 92, 285, 648, 951, 1026
BlsI GCNGC 5 cut(s) 93, 286, 649, 952, 1027
Bme18I GGWCC 1 cut(s) 52
BmeT110I CYCGRG 1 cut(s) 288
BmgT120I GGNCC 1 cut(s) 52
BmsI GCATC 5 cut(s) 385, 538, 739, 781, 960
Bpu10I CCTNAGC 1 cut(s) 585
BpuEI CTTGAG 2 cut(s) 264, 1043
BsaBI GATNNNNATC 2 cut(s) 300, 399
BsaHI GRCGYC 1 cut(s) 108
BsaI GGTCTC 1 cut(s) 282
BsaJI CCNNGG 3 cut(s) 12, 442, 786
BsaWI WCCGGW 1 cut(s) 82
Bsc4I CCNNNNNNNGG 2 cut(s) 673, 1070
Bse1I ACTGG 3 cut(s) 381, 625, 967
Bse3DI GCAATG 1 cut(s) 1016
Bse8I GATNNNNATC 2 cut(s) 300, 399
BseDI CCNNGG 3 cut(s) 12, 442, 786
BseGI GGATG 1 cut(s) 796
BseJI GATNNNNATC 2 cut(s) 300, 399
BseLI CCNNNNNNNGG 2 cut(s) 673, 1070
BseMI GCAATG 1 cut(s) 1016
BseMII CTCAG 4 cut(s) 117, 440, 599, 644
BseNI ACTGG 3 cut(s) 381, 625, 967
BseSI GKGCMC 2 cut(s) 544, 770
BseXI GCAGC 4 cut(s) 78, 296, 634, 937
BsgI GTGCAG 1 cut(s) 633
BshFI GGCC 4 cut(s) 154, 225, 502, 736
BsiHKAI GWGCWC 2 cut(s) 255, 770
BsiHKCI CYCGRG 1 cut(s) 288
BsiSI CCGG 1 cut(s) 83
BslFI GGGAC 2 cut(s) 360, 650
BslI CCNNNNNNNGG 2 cut(s) 673, 1070
BsmAI GTCTC 2 cut(s) 106, 282
BsmBI CGTCTC 1 cut(s) 106
BsmFI GGGAC 2 cut(s) 360, 650
BsmI GAATGC 1 cut(s) 172
BsnI GGCC 4 cut(s) 154, 225, 502, 736
Bso31I GGTCTC 1 cut(s) 282
BsoBI CYCGRG 1 cut(s) 288
Bsp1286I GDGCHC 4 cut(s) 255, 544, 770, 904
Bsp1407I TGTACA 1 cut(s) 705
Bsp143I GATC 5 cut(s) 156, 295, 301, 400, 568
Bsp19I CCATGG 1 cut(s) 12
BspACI CCGC 3 cut(s) 62, 815, 1026
BspANI GGCC 4 cut(s) 154, 225, 502, 736
BspCNI CTCAG 4 cut(s) 116, 439, 598, 643
BspPI GGATC 2 cut(s) 290, 395
BspQI GCTCTTC 1 cut(s) 354
BspTI CTTAAG 1 cut(s) 560
BspTNI GGTCTC 1 cut(s) 282
BsrDI GCAATG 1 cut(s) 1016
BsrGI TGTACA 1 cut(s) 705
BsrI ACTGG 3 cut(s) 381, 625, 967
BssECI CCNNGG 3 cut(s) 12, 442, 786
BssMI GATC 5 cut(s) 156, 295, 301, 400, 568
BssNI GRCGYC 1 cut(s) 108
BssT1I CCWWGG 2 cut(s) 12, 442
Bst6I CTCTTC 2 cut(s) 354, 411
BstACI GRCGYC 1 cut(s) 108
BstAFI CTTAAG 1 cut(s) 560
BstAUI TGTACA 1 cut(s) 705
BstC8I GCNNGC 4 cut(s) 315, 319, 720, 846
BstDEI CTNAG 5 cut(s) 103, 426, 585, 630, 693
BstDSI CCRYGG 1 cut(s) 12
BstF5I GGATG 1 cut(s) 796
BstKTI GATC 5 cut(s) 159, 298, 304, 403, 571
BstMAI GTCTC 2 cut(s) 106, 282
BstMBI GATC 5 cut(s) 156, 295, 301, 400, 568
BstMWI GCNNNNNNNGC 5 cut(s) 105, 217, 548, 791, 1031
BstNSI RCATGY 2 cut(s) 704, 722
BstSFI CTRYAG 1 cut(s) 1029
BstSLI GKGCMC 2 cut(s) 544, 770
BstV1I GCAGC 4 cut(s) 78, 296, 634, 937
BstX2I RGATCY 3 cut(s) 295, 301, 568
BstYI RGATCY 3 cut(s) 295, 301, 568
BsuRI GGCC 4 cut(s) 154, 225, 502, 736
BtgI CCRYGG 1 cut(s) 12
BtsCI GGATG 1 cut(s) 796
BtsI GCAGTG 1 cut(s) 48
BtsIMutI CAGTG 3 cut(s) 48, 388, 434
Cac8I GCNNGC 4 cut(s) 315, 319, 720, 846
Cfr13I GGNCC 1 cut(s) 52
CseI GACGC 2 cut(s) 88, 97
Csp6I GTAC 2 cut(s) 706, 1054
CspCI CAANNNNNGTGG 2 cut(s) 919, 954
CviAII CATG 6 cut(s) 13, 365, 545, 701, 719, 1018
CviQI GTAC 2 cut(s) 706, 1054
DdeI CTNAG 5 cut(s) 103, 426, 585, 630, 693
DpnI GATC 5 cut(s) 158, 297, 303, 402, 570
DpnII GATC 5 cut(s) 156, 295, 301, 400, 568
EaeI YGGCCR 2 cut(s) 152, 500
Eam1104I CTCTTC 2 cut(s) 354, 411
EarI CTCTTC 2 cut(s) 354, 411
Ecl136II GAGCTC 1 cut(s) 253
Eco130I CCWWGG 2 cut(s) 12, 442
Eco147I AGGCCT 1 cut(s) 225
Eco24I GRGCYC 2 cut(s) 255, 904
Eco31I GGTCTC 1 cut(s) 282
Eco47I GGWCC 1 cut(s) 52
Eco53kI GAGCTC 1 cut(s) 253
Eco88I CYCGRG 1 cut(s) 288
EcoICRI GAGCTC 1 cut(s) 253
EcoRI GAATTC 1 cut(s) 30
EcoT14I CCWWGG 2 cut(s) 12, 442
EcoT22I ATGCAT 2 cut(s) 172, 796
EcoT38I GRGCYC 2 cut(s) 255, 904
ErhI CCWWGG 2 cut(s) 12, 442
Esp3I CGTCTC 1 cut(s) 106
FaeI CATG 6 cut(s) 16, 368, 548, 704, 722, 1021
FalI AAGNNNNNCTT 4 cut(s) 857, 889, 899, 931
FaqI GGGAC 2 cut(s) 360, 650
FatI CATG 6 cut(s) 12, 364, 544, 700, 718, 1017
Fnu4HI GCNGC 5 cut(s) 92, 285, 648, 951, 1026
FokI GGATG 1 cut(s) 803
FriOI GRGCYC 2 cut(s) 255, 904
Fsp4HI GCNGC 5 cut(s) 92, 285, 648, 951, 1026
FspBI CTAG 6 cut(s) 221, 371, 387, 611, 644, 669
GluI GCNGC 5 cut(s) 92, 285, 648, 951, 1026
HaeIII GGCC 4 cut(s) 154, 225, 502, 736
HapII CCGG 1 cut(s) 83
HgaI GACGC 2 cut(s) 88, 97
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 6 cut(s) 16, 368, 548, 704, 722, 1021
HinfI GANTC 1 cut(s) 682
HpaII CCGG 1 cut(s) 83
HphI GGTGA 2 cut(s) 247, 368
Hpy166II GTNNAC 2 cut(s) 706, 768
Hpy188I TCNGA 6 cut(s) 306, 494, 517, 532, 568, 969
Hpy188III TCNNGA 4 cut(s) 290, 299, 410, 686
Hpy8I GTNNAC 2 cut(s) 706, 768
HpyAV CCTTC 2 cut(s) 80, 830
HpyF10VI GCNNNNNNNGC 5 cut(s) 105, 217, 548, 791, 1031
HpyF3I CTNAG 5 cut(s) 103, 426, 585, 630, 693
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 6 cut(s) 16, 368, 548, 704, 722, 1021
Kzo9I GATC 5 cut(s) 156, 295, 301, 400, 568
LguI GCTCTTC 1 cut(s) 354
LmnI GCTCC 2 cut(s) 250, 1116
Lsp1109I GCAGC 4 cut(s) 78, 296, 634, 937
LweI GCATC 5 cut(s) 385, 538, 739, 781, 960
MaeI CTAG 6 cut(s) 221, 371, 387, 611, 644, 669
MalI GATC 5 cut(s) 158, 297, 303, 402, 570
MboI GATC 5 cut(s) 156, 295, 301, 400, 568
MboII GAAGA 3 cut(s) 305, 371, 398
MflI RGATCY 3 cut(s) 295, 301, 568
MhlI GDGCHC 4 cut(s) 255, 544, 770, 904
MlsI TGGCCA 1 cut(s) 502
MluCI AATT 6 cut(s) 30, 200, 240, 335, 413, 888
MluNI TGGCCA 1 cut(s) 502
MlyI GAGTC 1 cut(s) 691
MmeI TCCRAC 1 cut(s) 228
MnlI CCTC 9 cut(s) 236, 335, 414, 488, 594, 648, 781, 965, 1067
Mox20I TGGCCA 1 cut(s) 502
Mph1103I ATGCAT 2 cut(s) 172, 796
MroXI GAANNNNTTC 1 cut(s) 417
MscI TGGCCA 1 cut(s) 502
MseI TTAA 4 cut(s) 195, 561, 711, 1123
MslI CAYNNNNRTG 3 cut(s) 83, 354, 865
Msp20I TGGCCA 1 cut(s) 502
MspCI CTTAAG 1 cut(s) 560
MspI CCGG 1 cut(s) 83
Mva1269I GAATGC 1 cut(s) 172
MwoI GCNNNNNNNGC 5 cut(s) 105, 217, 548, 791, 1031
NcoI CCATGG 1 cut(s) 12
NdeII GATC 5 cut(s) 156, 295, 301, 400, 568
NlaIII CATG 6 cut(s) 16, 368, 548, 704, 722, 1021
NmeAIII GCCGAG 1 cut(s) 811
NsiI ATGCAT 2 cut(s) 172, 796
NspI RCATGY 2 cut(s) 704, 722
OliI CACNNNNGTG 1 cut(s) 865
PaeI GCATGC 1 cut(s) 722
PaeR7I CTCGAG 1 cut(s) 288
PceI AGGCCT 1 cut(s) 225
PciSI GCTCTTC 1 cut(s) 354
PctI GAATGC 1 cut(s) 172
PdmI GAANNNNTTC 1 cut(s) 417
PkrI GCNGC 5 cut(s) 93, 286, 649, 952, 1027
PleI GAGTC 1 cut(s) 690
PpsI GAGTC 1 cut(s) 690
Psp124BI GAGCTC 1 cut(s) 255
PspPI GGNCC 1 cut(s) 52
PsrI GAACNNNNNNTAC 2 cut(s) 610, 642
PsuI RGATCY 3 cut(s) 295, 301, 568
RsaI GTAC 2 cut(s) 707, 1055
RsaNI GTAC 2 cut(s) 706, 1054
RseI CAYNNNNRTG 3 cut(s) 83, 354, 865
SacI GAGCTC 1 cut(s) 255
SapI GCTCTTC 1 cut(s) 354
SaqAI TTAA 4 cut(s) 195, 561, 711, 1123
SatI GCNGC 5 cut(s) 92, 285, 648, 951, 1026
Sau3AI GATC 5 cut(s) 156, 295, 301, 400, 568
Sau96I GGNCC 1 cut(s) 52
SchI GAGTC 1 cut(s) 691
SduI GDGCHC 4 cut(s) 255, 544, 770, 904
SfaNI GCATC 5 cut(s) 385, 538, 739, 781, 960
SfcI CTRYAG 1 cut(s) 1029
Sfr274I CTCGAG 1 cut(s) 288
SinI GGWCC 1 cut(s) 52
SlaI CTCGAG 1 cut(s) 288
SmiMI CAYNNNNRTG 3 cut(s) 83, 354, 865
SmlI CTYRAG 4 cut(s) 279, 288, 560, 1058
SmoI CTYRAG 4 cut(s) 279, 288, 560, 1058
SpeI ACTAGT 1 cut(s) 370
SphI GCATGC 1 cut(s) 722
Sse9I AATT 6 cut(s) 30, 200, 240, 335, 413, 888
SseBI AGGCCT 1 cut(s) 225
SsiI CCGC 3 cut(s) 62, 815, 1026
SspMI CTAG 6 cut(s) 221, 371, 387, 611, 644, 669
SstI GAGCTC 1 cut(s) 255
StuI AGGCCT 1 cut(s) 225
StyI CCWWGG 2 cut(s) 12, 442
TaqI TCGA 1 cut(s) 289
TasI AATT 6 cut(s) 30, 200, 240, 335, 413, 888
TatI WGTACW 1 cut(s) 705
TauI GCSGC 1 cut(s) 1028
Tru1I TTAA 4 cut(s) 195, 561, 711, 1123
Tru9I TTAA 4 cut(s) 195, 561, 711, 1123
TscAI CASTG 3 cut(s) 48, 388, 434
TseI GCWGC 4 cut(s) 91, 284, 647, 950
TspDTI ATGAA 3 cut(s) 62, 381, 1006
TspRI CASTG 3 cut(s) 48, 388, 434
Vha464I CTTAAG 1 cut(s) 560
VneI GTGCAC 1 cut(s) 766
VpaK11BI GGWCC 1 cut(s) 52
XapI RAATTY 1 cut(s) 30
XceI RCATGY 2 cut(s) 704, 722
XhoI CTCGAG 1 cut(s) 288
XmnI GAANNNNTTC 1 cut(s) 417
XspI CTAG 6 cut(s) 221, 371, 387, 611, 644, 669
Zsp2I ATGCAT 2 cut(s) 172, 796
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.