RchiOBHm_Chr2g0149391

1-acyl-sn-glycerol-3-phosphate acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001488
Physical Location & Seq
Forward (+)
67235274 .. 67240311
5038 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51879

Sequence Viewer

Length: 942 bp
ATGCCAATGATTTTATTTTATATCAAAGAGTATTGCGGCTTTTCGGATTTGTTCTGCTATATCTTACTTGTATCAGTGATCCTCGTGTGTGCAGAGCAGGAAACCAGTAATTTAAAGGGTAAAGAACATGAACTTGTCATATCCAATGCTAGAAGTAATGCCGATCATCTTGTTGAACTGGTTCTCGCTCAGGCCATAGGGTGGTCAATGTGGTTTTCTGAATATATTTTTTCAAAAAGAAGTTGTGCCCAAGATGCAAGAAAACTTAAGTCAGATCTAAAGGACTTCCCTCAGCCCTTTTGGTTATCTGTTGGCCTAGAAAGAACTGGTTTTACTCAGGGAGAGCTACTGGCTGCACAGAGGCTTCCTATCCCTAGCAAGGTTTTGAGTCCTATTGCTAAGGATTTGGTCTATGCAGTAAGATGTGCATACTCTGTTATTTATGTCATAACAGTGGCCATTCCTGAAACTTCACCTCCACCTACACTTGAAAGTGTAATTAAAGGGGGACTTTCTGTGGTGCATGTGTACATCAAGCGGCATGTGACTAAAAACTGGCCAGAAACTGATGATGAAAAGTGGTGCACAGAAATACTTGCAGCCAAGGATGCATTATTGGACGAACATATAGCAGAACGAACTTTTGGCGTTAAAGGATTGCAAGCTATTGGTCGGCCACTAAAGTGTTTCTTGGTTATATCTCTAATTGTGTTGTGGGCTCTAAAGTTCAACTTTGTCTGCTGTTCCACACTGCTTGTATGGAGTGCTGCCCTCTTTACTGGTCGGATGCTTACTCTGTTCGGCTGTGGAGTGCTTTCGCTGTTGCAGTGTTTCATGGAAGCCGCTATAGCAAACATTAGTTGGTCAAAGTACCTCAAGCCCATCTGTGGCTGGTTGATTTACAATCTTGGAGAGTTGTGTTTGTTGCTCCCTTGTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko00564 ko01100 ko01110 ko04072 map00561 map00564 map01100 map01110 map04072
Pfam Domains
Protein Families
Acyltransf_C Acyltransferase

Protein Analysis

313

Amino Acids

35.1

Weight (kDa)

6.92

Isoelectric Point (pI)

36.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyltransf_C PF16076 167 - 234 4.9e-10 Acyltransferase C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 201
AciI CCGC 3 cut(s) 36, 538, 843
AclWI GGATC 1 cut(s) 73
AcoI YGGCCR 3 cut(s) 456, 557, 674
AfaI GTAC 2 cut(s) 530, 872
AfiI CCNNNNNNNGG 3 cut(s) 201, 379, 887
AflII CTTAAG 1 cut(s) 266
AgsI TTSAA 4 cut(s) 176, 234, 491, 730
AjuI GAANNNNNNNTTGG 2 cut(s) 627, 659
AleI CACNNNNGTG 1 cut(s) 682
AluBI AGCT 2 cut(s) 346, 665
AluI AGCT 2 cut(s) 346, 665
Alw21I GWGCWC 1 cut(s) 587
Alw44I GTGCAC 1 cut(s) 583
AlwI GGATC 1 cut(s) 73
AlwNI CAGNNNCTG 1 cut(s) 566
AoxI GGCC 5 cut(s) 192, 313, 456, 557, 674
ApaLI GTGCAC 1 cut(s) 583
ApeKI GCWGC 3 cut(s) 353, 599, 767
Asp700I GAANNNNTTC 1 cut(s) 180
AsuHPI GGTGA 1 cut(s) 465
BaeGI GKGCMC 2 cut(s) 250, 587
BalI TGGCCA 2 cut(s) 458, 559
BanII GRGCYC 1 cut(s) 721
BauI CACGAG 1 cut(s) 83
Bbv12I GWGCWC 1 cut(s) 587
BbvCI CCTCAGC 1 cut(s) 291
BbvI GCAGC 3 cut(s) 340, 611, 754
BccI CCATC 1 cut(s) 890
BfaI CTAG 3 cut(s) 150, 317, 375
BfmI CTRYAG 1 cut(s) 846
BfrI CTTAAG 1 cut(s) 266
BglII AGATCT 1 cut(s) 274
BisI GCNGC 6 cut(s) 37, 354, 539, 600, 768, 843
BlsI GCNGC 6 cut(s) 38, 355, 540, 601, 769, 844
BmsI GCATC 3 cut(s) 244, 598, 777
Bpu10I CCTNAGC 3 cut(s) 189, 291, 399
BpuEI CTTGAG 1 cut(s) 860
BsaJI CCNNGG 1 cut(s) 603
BsaXI ACNNNNNCTCC 2 cut(s) 460, 490
Bsc4I CCNNNNNNNGG 3 cut(s) 201, 379, 887
Bse1I ACTGG 6 cut(s) 105, 183, 331, 354, 560, 784
BseDI CCNNGG 1 cut(s) 603
BseGI GGATG 2 cut(s) 613, 792
BseLI CCNNNNNNNGG 3 cut(s) 201, 379, 887
BseMII CTCAG 3 cut(s) 203, 305, 350
BseNI ACTGG 6 cut(s) 105, 183, 331, 354, 560, 784
BseSI GKGCMC 2 cut(s) 250, 587
BseXI GCAGC 3 cut(s) 340, 611, 754
BsgI GTGCAG 2 cut(s) 111, 339
BshFI GGCC 5 cut(s) 194, 315, 458, 559, 676
BsiHKAI GWGCWC 1 cut(s) 587
BslFI GGGAC 1 cut(s) 522
BslI CCNNNNNNNGG 3 cut(s) 201, 379, 887
BsmFI GGGAC 1 cut(s) 522
BsnI GGCC 5 cut(s) 194, 315, 458, 559, 676
Bsp1286I GDGCHC 3 cut(s) 250, 587, 721
Bsp1407I TGTACA 1 cut(s) 528
Bsp143I GATC 3 cut(s) 78, 163, 274
BspACI CCGC 3 cut(s) 36, 538, 843
BspANI GGCC 5 cut(s) 194, 315, 458, 559, 676
BspCNI CTCAG 3 cut(s) 202, 304, 349
BspPI GGATC 1 cut(s) 73
BspTI CTTAAG 1 cut(s) 266
BsrGI TGTACA 1 cut(s) 528
BsrI ACTGG 6 cut(s) 105, 183, 331, 354, 560, 784
BssECI CCNNGG 1 cut(s) 603
BssMI GATC 3 cut(s) 78, 163, 274
BssSI CACGAG 1 cut(s) 83
BssT1I CCWWGG 1 cut(s) 603
Bst2BI CACGAG 1 cut(s) 83
Bst4CI ACNGT 1 cut(s) 454
BstAFI CTTAAG 1 cut(s) 266
BstAUI TGTACA 1 cut(s) 528
BstC8I GCNNGC 1 cut(s) 663
BstDEI CTNAG 4 cut(s) 189, 291, 336, 399
BstF5I GGATG 2 cut(s) 613, 792
BstKTI GATC 3 cut(s) 81, 166, 277
BstMBI GATC 3 cut(s) 78, 163, 274
BstMWI GCNNNNNNNGC 3 cut(s) 254, 608, 848
BstNSI RCATGY 2 cut(s) 527, 545
BstSFI CTRYAG 1 cut(s) 846
BstSLI GKGCMC 2 cut(s) 250, 587
BstV1I GCAGC 3 cut(s) 340, 611, 754
BstX2I RGATCY 1 cut(s) 274
BstYI RGATCY 1 cut(s) 274
BsuRI GGCC 5 cut(s) 194, 315, 458, 559, 676
BtsCI GGATG 2 cut(s) 613, 792
BtsI GCAGTG 2 cut(s) 749, 833
BtsIMutI CAGTG 4 cut(s) 81, 459, 749, 833
Cac8I GCNNGC 1 cut(s) 663
CaiI CAGNNNCTG 1 cut(s) 566
Csp6I GTAC 2 cut(s) 529, 871
CspCI CAANNNNNGTGG 2 cut(s) 736, 771
CviAII CATG 4 cut(s) 128, 524, 542, 835
CviQI GTAC 2 cut(s) 529, 871
DdeI CTNAG 4 cut(s) 189, 291, 336, 399
DpnI GATC 3 cut(s) 80, 165, 276
DpnII GATC 3 cut(s) 78, 163, 274
DraI TTTAAA 1 cut(s) 114
EaeI YGGCCR 3 cut(s) 456, 557, 674
Eco130I CCWWGG 1 cut(s) 603
Eco24I GRGCYC 1 cut(s) 721
EcoT14I CCWWGG 1 cut(s) 603
EcoT22I ATGCAT 1 cut(s) 613
EcoT38I GRGCYC 1 cut(s) 721
ErhI CCWWGG 1 cut(s) 603
FaeI CATG 4 cut(s) 131, 527, 545, 838
FalI AAGNNNNNCTT 6 cut(s) 495, 527, 674, 706, 716, 748
FaqI GGGAC 1 cut(s) 522
FatI CATG 4 cut(s) 127, 523, 541, 834
Fnu4HI GCNGC 6 cut(s) 37, 354, 539, 600, 768, 843
FokI GGATG 2 cut(s) 620, 799
FriOI GRGCYC 1 cut(s) 721
Fsp4HI GCNGC 6 cut(s) 37, 354, 539, 600, 768, 843
FspBI CTAG 3 cut(s) 150, 317, 375
GluI GCNGC 6 cut(s) 37, 354, 539, 600, 768, 843
HaeIII GGCC 5 cut(s) 194, 315, 458, 559, 676
Hin1II CATG 4 cut(s) 131, 527, 545, 838
HinfI GANTC 1 cut(s) 388
HphI GGTGA 1 cut(s) 465
Hpy166II GTNNAC 2 cut(s) 529, 585
Hpy188I TCNGA 4 cut(s) 46, 220, 274, 786
Hpy188III TCNNGA 1 cut(s) 464
Hpy8I GTNNAC 2 cut(s) 529, 585
HpyCH4III ACNGT 1 cut(s) 454
HpyF10VI GCNNNNNNNGC 3 cut(s) 254, 608, 848
HpyF3I CTNAG 4 cut(s) 189, 291, 336, 399
Hsp92II CATG 4 cut(s) 131, 527, 545, 838
Kzo9I GATC 3 cut(s) 78, 163, 274
LmnI GCTCC 1 cut(s) 933
Lsp1109I GCAGC 3 cut(s) 340, 611, 754
LweI GCATC 3 cut(s) 244, 598, 777
MaeI CTAG 3 cut(s) 150, 317, 375
MaeIII GTNAC 1 cut(s) 544
MalI GATC 3 cut(s) 80, 165, 276
MboI GATC 3 cut(s) 78, 163, 274
MflI RGATCY 1 cut(s) 274
MhlI GDGCHC 3 cut(s) 250, 587, 721
MlsI TGGCCA 2 cut(s) 458, 559
MluCI AATT 3 cut(s) 109, 498, 705
MluNI TGGCCA 2 cut(s) 458, 559
MlyI GAGTC 1 cut(s) 397
MmeI TCCRAC 1 cut(s) 764
MnlI CCTC 6 cut(s) 92, 300, 354, 486, 782, 884
Mox20I TGGCCA 2 cut(s) 458, 559
Mph1103I ATGCAT 1 cut(s) 613
MroXI GAANNNNTTC 1 cut(s) 180
MscI TGGCCA 2 cut(s) 458, 559
MseI TTAA 5 cut(s) 113, 267, 501, 651, 940
MslI CAYNNNNRTG 2 cut(s) 452, 682
Msp20I TGGCCA 2 cut(s) 458, 559
MspCI CTTAAG 1 cut(s) 266
MwoI GCNNNNNNNGC 3 cut(s) 254, 608, 848
NdeII GATC 3 cut(s) 78, 163, 274
NlaIII CATG 4 cut(s) 131, 527, 545, 838
NmuCI GTSAC 1 cut(s) 544
NsiI ATGCAT 1 cut(s) 613
NspI RCATGY 2 cut(s) 527, 545
OliI CACNNNNGTG 1 cut(s) 682
PdmI GAANNNNTTC 1 cut(s) 180
PflMI CCANNNNNTGG 1 cut(s) 201
PkrI GCNGC 6 cut(s) 38, 355, 540, 601, 769, 844
PleI GAGTC 1 cut(s) 396
PpsI GAGTC 1 cut(s) 396
PsrI GAACNNNNNNTAC 2 cut(s) 316, 348
PstNI CAGNNNCTG 1 cut(s) 566
PsuI RGATCY 1 cut(s) 274
RsaI GTAC 2 cut(s) 530, 872
RsaNI GTAC 2 cut(s) 529, 871
RseI CAYNNNNRTG 2 cut(s) 452, 682
SaqAI TTAA 5 cut(s) 113, 267, 501, 651, 940
SatI GCNGC 6 cut(s) 37, 354, 539, 600, 768, 843
Sau3AI GATC 3 cut(s) 78, 163, 274
SchI GAGTC 1 cut(s) 397
SduI GDGCHC 3 cut(s) 250, 587, 721
SetI ASST 6 cut(s) 348, 384, 478, 484, 667, 876
SfaNI GCATC 3 cut(s) 244, 598, 777
SfcI CTRYAG 1 cut(s) 846
SmiMI CAYNNNNRTG 2 cut(s) 452, 682
SmlI CTYRAG 2 cut(s) 266, 875
SmoI CTYRAG 2 cut(s) 266, 875
Sse9I AATT 3 cut(s) 109, 498, 705
SsiI CCGC 3 cut(s) 36, 538, 843
SspMI CTAG 3 cut(s) 150, 317, 375
StyI CCWWGG 1 cut(s) 603
TaaI ACNGT 1 cut(s) 454
TasI AATT 3 cut(s) 109, 498, 705
TatI WGTACW 1 cut(s) 528
TauI GCSGC 3 cut(s) 39, 541, 845
Tru1I TTAA 5 cut(s) 113, 267, 501, 651, 940
Tru9I TTAA 5 cut(s) 113, 267, 501, 651, 940
TscAI CASTG 4 cut(s) 81, 459, 756, 833
TseFI GTSAC 1 cut(s) 544
TseI GCWGC 3 cut(s) 353, 599, 767
Tsp45I GTSAC 1 cut(s) 544
TspDTI ATGAA 3 cut(s) 144, 588, 823
TspRI CASTG 4 cut(s) 81, 459, 756, 833
Van91I CCANNNNNTGG 1 cut(s) 201
Vha464I CTTAAG 1 cut(s) 266
VneI GTGCAC 1 cut(s) 583
XceI RCATGY 2 cut(s) 527, 545
XmnI GAANNNNTTC 1 cut(s) 180
XspI CTAG 3 cut(s) 150, 317, 375
Zsp2I ATGCAT 1 cut(s) 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.