Rroxscaffold_2G00098130

1-acyl-sn-glycerol-3-phosphate acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001488
Physical Location & Seq
Reverse (-)
19302105 .. 19307659
5555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00098130.1

Sequence Viewer

Length: 1263 bp
ATGGTTTTGCCCATGGCGATTGCACTCGGAATCCTCTTTTCAGTGGTCGTGGTCCTCCATCCGCTAATCCTTCATCTCATTCCGGTGGTGCTGCTCTGCGTCTCAGGACTCTTTGCCAATCTGGTTCAGGCGTTTTGCTTTGTTTGTATCTGGCCGATCTCGAAGAATGCATACTCTAGGATAAACGGCGTGGTTAAAGAATTGGATTGGCGGGTTCTGCTAGGCCTCATTGAGTGGTGCGGTGGCGTTAAGAGTATTGCGGCTTTTCGGATTTGTTCTGCTATATCTTACTTGAATCAGTGTTCAGTTTTGTTTGTCATTCGTGTCAAGTCCCATATTGGGTCAATTTTAAGGACAATTTTGTCAGAGCTGACCCCTAATACAGCCATCTGGGCTCGAGCGACTCGAGAAGATCCAGATTTGATTGCGCTGGCTGGCATTCTTGTTTCGTTTTCCATACGAACTATCCTCGTGTGTGCAGAGCAGGAAACCAGTCATTTAAAGGGTAAAGAACATGAACTTGTCATATCCAATGCTAGAAGTGATGCCGATCATCTTGTTGAACTGGTTCTCGCTCAGGCCATAGGGTGGTCAATGTGGTTTTCTGAATATATTTTTTCAAAAAGAAGTTGTGCCCAAGATGCAAGAAAACTTAAGTCAGATCTAAAGGACTTCCCTCAGCCCTTTTGGTTATCTGTTGGCCTAGAAAGAACTGGTTTTACTCAGGGAGAGCTACTAGCTGCACAGAGGCTTCCTATCCCTAGCAAGGTTTTGAGTCCTATTGCTAAGGATTTGGTCTATGCAGTAAGATGTGCACACTCTGTTGTTCCAGCCATTTATGTCATAACAGTGGCCATTCCTGAAACTTCACCTCCACCTACACTTGAAAGTGTAATTAAAGGGGGACTTTCTGTGGTGCATGTGTACATCAAGCGGCATGTGACTAAAAACTGGCCTGAAACTGATGATGCTGTTGAAAAGTGGTGCACAGAAATACTTGCAGCCAAGGTGATTTCATTACTATGGGCTCTAAAGTTCAACTTCGTCTGCTGTTCCACACTGCTTGTATTGAGTGCTGCCCTCTTTACCGGCCGGGTGCTTACTCTGTTCGGCTGTGGAGTGCTTTCGCTGTTGCAGTGTTTCATGGAGGCCTCTATAGCAAACATTAGTTGGTCAGAGCACCTCAAGCCCATCTGTGGCTGGTTGATTGATATTCTTGGAGAATTGCTTTCGACGCTTCCCTGTGATAGACCTTGGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko00564 ko01100 ko01110 ko04072 map00561 map00564 map01100 map01110 map04072
Pfam Domains
Protein Families
Acyltransf_C Acyltransferase

Protein Analysis

420

Amino Acids

46.38

Weight (kDa)

8.11

Isoelectric Point (pI)

31.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 361
AccB7I CCANNNNNTGG 1 cut(s) 588
AciI CCGC 5 cut(s) 62, 211, 240, 260, 934
AclWI GGATC 1 cut(s) 407
AcoI YGGCCR 3 cut(s) 152, 852, 1090
AfaI GTAC 1 cut(s) 926
AfiI CCNNNNNNNGG 4 cut(s) 339, 588, 766, 1196
AflII CTTAAG 1 cut(s) 653
AgsI TTSAA 6 cut(s) 295, 563, 621, 887, 977, 1039
AluBI AGCT 3 cut(s) 370, 733, 740
AluI AGCT 3 cut(s) 370, 733, 740
Alw21I GWGCWC 3 cut(s) 817, 989, 1182
Alw26I GTCTC 1 cut(s) 106
Alw44I GTGCAC 2 cut(s) 813, 985
AlwI GGATC 1 cut(s) 407
Ama87I CYCGRG 2 cut(s) 396, 405
AoxI GGCC 8 cut(s) 152, 223, 579, 700, 852, 953, 1090, 1149
ApaLI GTGCAC 2 cut(s) 813, 985
ApeKI GCWGC 4 cut(s) 91, 740, 1001, 1076
Asp700I GAANNNNTTC 1 cut(s) 567
AspLEI GCGC 1 cut(s) 430
AspS9I GGNCC 1 cut(s) 52
AsuC2I CCSGG 1 cut(s) 1094
AsuHPI GGTGA 2 cut(s) 861, 1021
AvaI CYCGRG 2 cut(s) 396, 405
AvaII GGWCC 1 cut(s) 52
BaeGI GKGCMC 3 cut(s) 637, 817, 989
BalI TGGCCA 1 cut(s) 854
BanII GRGCYC 2 cut(s) 397, 1030
BarI GAAGNNNNNNTAC 2 cut(s) 155, 187
BauI CACGAG 1 cut(s) 470
Bbv12I GWGCWC 3 cut(s) 817, 989, 1182
BbvCI CCTCAGC 1 cut(s) 678
BbvI GCAGC 4 cut(s) 78, 727, 1013, 1063
BccI CCATC 3 cut(s) 66, 395, 1199
BceAI ACGGC 1 cut(s) 202
BcnI CCSGG 1 cut(s) 1094
BcoDI GTCTC 1 cut(s) 106
BfaI CTAG 6 cut(s) 177, 221, 537, 704, 737, 762
BfmI CTRYAG 1 cut(s) 1155
BfrI CTTAAG 1 cut(s) 653
BglI GCCNNNNNGGC 1 cut(s) 392
BglII AGATCT 1 cut(s) 661
BisI GCNGC 6 cut(s) 92, 261, 741, 935, 1002, 1077
BlsI GCNGC 6 cut(s) 93, 262, 742, 936, 1003, 1078
Bme1390I CCNGG 1 cut(s) 1094
Bme18I GGWCC 1 cut(s) 52
BmeT110I CYCGRG 2 cut(s) 396, 405
BmgT120I GGNCC 1 cut(s) 52
BmrFI CCNGG 1 cut(s) 1094
BmsI GCATC 3 cut(s) 535, 631, 958
Bpu10I CCTNAGC 3 cut(s) 576, 678, 786
BpuEI CTTGAG 1 cut(s) 1169
BpuMI CCSGG 1 cut(s) 1094
BsaBI GATNNNNATC 1 cut(s) 549
BsaJI CCNNGG 3 cut(s) 12, 1005, 1253
BsaWI WCCGGW 1 cut(s) 82
BsaXI ACNNNNNCTCC 2 cut(s) 856, 886
Bsc4I CCNNNNNNNGG 4 cut(s) 339, 588, 766, 1196
Bse118I RCCGGY 1 cut(s) 1088
Bse1I ACTGG 4 cut(s) 492, 570, 718, 956
Bse8I GATNNNNATC 1 cut(s) 549
BseDI CCNNGG 3 cut(s) 12, 1005, 1253
BseGI GGATG 1 cut(s) 58
BseJI GATNNNNATC 1 cut(s) 549
BseLI CCNNNNNNNGG 4 cut(s) 339, 588, 766, 1196
BseMII CTCAG 4 cut(s) 117, 590, 692, 737
BseNI ACTGG 4 cut(s) 492, 570, 718, 956
BseSI GKGCMC 3 cut(s) 637, 817, 989
BseX3I CGGCCG 1 cut(s) 1090
BseXI GCAGC 4 cut(s) 78, 727, 1013, 1063
BsgI GTGCAG 2 cut(s) 498, 726
Bsh1285I CGRYCG 1 cut(s) 1093
BshFI GGCC 8 cut(s) 154, 225, 581, 702, 854, 955, 1092, 1151
BsiEI CGRYCG 1 cut(s) 1093
BsiHKAI GWGCWC 3 cut(s) 817, 989, 1182
BsiHKCI CYCGRG 2 cut(s) 396, 405
BsiSI CCGG 3 cut(s) 83, 1089, 1093
BslFI GGGAC 2 cut(s) 316, 918
BslI CCNNNNNNNGG 4 cut(s) 339, 588, 766, 1196
BsmAI GTCTC 1 cut(s) 106
BsmBI CGTCTC 1 cut(s) 106
BsmFI GGGAC 2 cut(s) 316, 918
BsmI GAATGC 2 cut(s) 172, 438
BsnI GGCC 8 cut(s) 154, 225, 581, 702, 854, 955, 1092, 1151
BsoBI CYCGRG 2 cut(s) 396, 405
Bsp1286I GDGCHC 6 cut(s) 397, 637, 817, 989, 1030, 1182
Bsp1407I TGTACA 1 cut(s) 924
Bsp143I GATC 4 cut(s) 156, 412, 550, 661
Bsp19I CCATGG 1 cut(s) 12
BspACI CCGC 5 cut(s) 62, 211, 240, 260, 934
BspANI GGCC 8 cut(s) 154, 225, 581, 702, 854, 955, 1092, 1151
BspCNI CTCAG 4 cut(s) 116, 589, 691, 736
BspPI GGATC 1 cut(s) 407
BspTI CTTAAG 1 cut(s) 653
BsrFI RCCGGY 1 cut(s) 1088
BsrGI TGTACA 1 cut(s) 924
BsrI ACTGG 4 cut(s) 492, 570, 718, 956
BssAI RCCGGY 1 cut(s) 1088
BssECI CCNNGG 3 cut(s) 12, 1005, 1253
BssMI GATC 4 cut(s) 156, 412, 550, 661
BssSI CACGAG 1 cut(s) 470
BssT1I CCWWGG 3 cut(s) 12, 1005, 1253
Bst2BI CACGAG 1 cut(s) 470
Bst4CI ACNGT 1 cut(s) 850
BstAFI CTTAAG 1 cut(s) 653
BstAUI TGTACA 1 cut(s) 924
BstC8I GCNNGC 2 cut(s) 432, 436
BstDEI CTNAG 5 cut(s) 103, 576, 678, 723, 786
BstDSI CCRYGG 1 cut(s) 12
BstF5I GGATG 1 cut(s) 58
BstHHI GCGC 1 cut(s) 430
BstKTI GATC 4 cut(s) 159, 415, 553, 664
BstMAI GTCTC 1 cut(s) 106
BstMBI GATC 4 cut(s) 156, 412, 550, 661
BstMCI CGRYCG 1 cut(s) 1093
BstMWI GCNNNNNNNGC 6 cut(s) 217, 392, 641, 1157, 1186, 1234
BstNSI RCATGY 2 cut(s) 923, 941
BstSCI CCNGG 1 cut(s) 1092
BstSFI CTRYAG 1 cut(s) 1155
BstSLI GKGCMC 3 cut(s) 637, 817, 989
BstV1I GCAGC 4 cut(s) 78, 727, 1013, 1063
BstX2I RGATCY 2 cut(s) 412, 661
BstYI RGATCY 2 cut(s) 412, 661
BstZI CGGCCG 1 cut(s) 1090
BsuRI GGCC 8 cut(s) 154, 225, 581, 702, 854, 955, 1092, 1151
BtgI CCRYGG 1 cut(s) 12
BtsCI GGATG 1 cut(s) 58
BtsI GCAGTG 2 cut(s) 1058, 1142
BtsIMutI CAGTG 5 cut(s) 48, 305, 855, 1058, 1142
Cac8I GCNNGC 2 cut(s) 432, 436
CfoI GCGC 1 cut(s) 430
Cfr10I RCCGGY 1 cut(s) 1088
Cfr13I GGNCC 1 cut(s) 52
CseI GACGC 2 cut(s) 88, 1243
Csp6I GTAC 1 cut(s) 925
CspCI CAANNNNNGTGG 2 cut(s) 1045, 1080
CviAII CATG 5 cut(s) 13, 515, 920, 938, 1144
CviQI GTAC 1 cut(s) 925
DdeI CTNAG 5 cut(s) 103, 576, 678, 723, 786
DpnI GATC 4 cut(s) 158, 414, 552, 663
DpnII GATC 4 cut(s) 156, 412, 550, 661
DraI TTTAAA 1 cut(s) 501
DrdI GACNNNNNNGTC 1 cut(s) 361
DseDI GACNNNNNNGTC 1 cut(s) 361
EaeI YGGCCR 3 cut(s) 152, 852, 1090
EagI CGGCCG 1 cut(s) 1090
EclXI CGGCCG 1 cut(s) 1090
Eco130I CCWWGG 3 cut(s) 12, 1005, 1253
Eco147I AGGCCT 2 cut(s) 225, 1151
Eco24I GRGCYC 2 cut(s) 397, 1030
Eco47I GGWCC 1 cut(s) 52
Eco52I CGGCCG 1 cut(s) 1090
Eco88I CYCGRG 2 cut(s) 396, 405
EcoT14I CCWWGG 3 cut(s) 12, 1005, 1253
EcoT22I ATGCAT 1 cut(s) 172
EcoT38I GRGCYC 2 cut(s) 397, 1030
ErhI CCWWGG 3 cut(s) 12, 1005, 1253
Esp3I CGTCTC 1 cut(s) 106
FaeI CATG 5 cut(s) 16, 518, 923, 941, 1147
FalI AAGNNNNNCTT 4 cut(s) 891, 923, 1025, 1057
FaqI GGGAC 2 cut(s) 316, 918
FatI CATG 5 cut(s) 12, 514, 919, 937, 1143
FauI CCCGC 1 cut(s) 204
Fnu4HI GCNGC 6 cut(s) 92, 261, 741, 935, 1002, 1077
FokI GGATG 1 cut(s) 45
FriOI GRGCYC 2 cut(s) 397, 1030
Fsp4HI GCNGC 6 cut(s) 92, 261, 741, 935, 1002, 1077
FspBI CTAG 6 cut(s) 177, 221, 537, 704, 737, 762
GlaI GCGC 1 cut(s) 429
GluI GCNGC 6 cut(s) 92, 261, 741, 935, 1002, 1077
HaeIII GGCC 8 cut(s) 154, 225, 581, 702, 854, 955, 1092, 1151
HapII CCGG 3 cut(s) 83, 1089, 1093
HgaI GACGC 2 cut(s) 88, 1243
HhaI GCGC 1 cut(s) 430
Hin1II CATG 5 cut(s) 16, 518, 923, 941, 1147
Hin6I GCGC 1 cut(s) 428
HinP1I GCGC 1 cut(s) 428
HinfI GANTC 5 cut(s) 30, 108, 295, 403, 775
HpaII CCGG 3 cut(s) 83, 1089, 1093
HphI GGTGA 2 cut(s) 861, 1021
Hpy166II GTNNAC 3 cut(s) 815, 925, 987
Hpy188I TCNGA 6 cut(s) 29, 270, 367, 607, 661, 1177
Hpy188III TCNNGA 5 cut(s) 105, 160, 407, 416, 860
Hpy8I GTNNAC 3 cut(s) 815, 925, 987
Hpy99I CGWCG 1 cut(s) 1237
HpyAV CCTTC 1 cut(s) 80
HpyCH4III ACNGT 1 cut(s) 850
HpyF10VI GCNNNNNNNGC 6 cut(s) 217, 392, 641, 1157, 1186, 1234
HpyF3I CTNAG 5 cut(s) 103, 576, 678, 723, 786
Hsp92II CATG 5 cut(s) 16, 518, 923, 941, 1147
HspAI GCGC 1 cut(s) 428
Kzo9I GATC 4 cut(s) 156, 412, 550, 661
Lsp1109I GCAGC 4 cut(s) 78, 727, 1013, 1063
LweI GCATC 3 cut(s) 535, 631, 958
MaeI CTAG 6 cut(s) 177, 221, 537, 704, 737, 762
MaeIII GTNAC 1 cut(s) 940
MalI GATC 4 cut(s) 158, 414, 552, 663
MboI GATC 4 cut(s) 156, 412, 550, 661
MboII GAAGA 2 cut(s) 175, 422
MflI RGATCY 2 cut(s) 412, 661
MhlI GDGCHC 6 cut(s) 397, 637, 817, 989, 1030, 1182
MlsI TGGCCA 1 cut(s) 854
MluCI AATT 5 cut(s) 200, 345, 357, 894, 1223
MluNI TGGCCA 1 cut(s) 854
MlyI GAGTC 3 cut(s) 102, 397, 784
Mox20I TGGCCA 1 cut(s) 854
Mph1103I ATGCAT 1 cut(s) 172
MroXI GAANNNNTTC 1 cut(s) 567
MscI TGGCCA 1 cut(s) 854
MseI TTAA 6 cut(s) 195, 249, 350, 500, 654, 897
MslI CAYNNNNRTG 3 cut(s) 83, 848, 1021
Msp20I TGGCCA 1 cut(s) 854
MspCI CTTAAG 1 cut(s) 653
MspI CCGG 3 cut(s) 83, 1089, 1093
MspR9I CCNGG 1 cut(s) 1094
Mva1269I GAATGC 2 cut(s) 172, 438
MwoI GCNNNNNNNGC 6 cut(s) 217, 392, 641, 1157, 1186, 1234
NciI CCSGG 1 cut(s) 1094
NcoI CCATGG 1 cut(s) 12
NdeII GATC 4 cut(s) 156, 412, 550, 661
NlaIII CATG 5 cut(s) 16, 518, 923, 941, 1147
NmuCI GTSAC 1 cut(s) 940
NsiI ATGCAT 1 cut(s) 172
NspI RCATGY 2 cut(s) 923, 941
PaeR7I CTCGAG 2 cut(s) 396, 405
PceI AGGCCT 2 cut(s) 225, 1151
PcsI WCGNNNNNNNCGW 1 cut(s) 403
PctI GAATGC 2 cut(s) 172, 438
PdmI GAANNNNTTC 1 cut(s) 567
PfeI GAWTC 2 cut(s) 30, 295
PflMI CCANNNNNTGG 1 cut(s) 588
PkrI GCNGC 6 cut(s) 93, 262, 742, 936, 1003, 1078
PleI GAGTC 3 cut(s) 102, 397, 783
PpsI GAGTC 3 cut(s) 102, 397, 783
PspPI GGNCC 1 cut(s) 52
PspXI VCTCGAGB 1 cut(s) 396
PsrI GAACNNNNNNTAC 2 cut(s) 703, 735
PsuI RGATCY 2 cut(s) 412, 661
RsaI GTAC 1 cut(s) 926
RsaNI GTAC 1 cut(s) 925
RseI CAYNNNNRTG 3 cut(s) 83, 848, 1021
SaqAI TTAA 6 cut(s) 195, 249, 350, 500, 654, 897
SatI GCNGC 6 cut(s) 92, 261, 741, 935, 1002, 1077
Sau3AI GATC 4 cut(s) 156, 412, 550, 661
Sau96I GGNCC 1 cut(s) 52
SchI GAGTC 3 cut(s) 102, 397, 784
ScrFI CCNGG 1 cut(s) 1094
SduI GDGCHC 6 cut(s) 397, 637, 817, 989, 1030, 1182
SetI ASST 9 cut(s) 372, 735, 742, 771, 874, 880, 1011, 1185, 1255
SfaNI GCATC 3 cut(s) 535, 631, 958
SfcI CTRYAG 1 cut(s) 1155
Sfr274I CTCGAG 2 cut(s) 396, 405
SinI GGWCC 1 cut(s) 52
SlaI CTCGAG 2 cut(s) 396, 405
SmiMI CAYNNNNRTG 3 cut(s) 83, 848, 1021
SmlI CTYRAG 4 cut(s) 396, 405, 653, 1184
SmoI CTYRAG 4 cut(s) 396, 405, 653, 1184
Sse9I AATT 5 cut(s) 200, 345, 357, 894, 1223
SseBI AGGCCT 2 cut(s) 225, 1151
SsiI CCGC 5 cut(s) 62, 211, 240, 260, 934
SspMI CTAG 6 cut(s) 177, 221, 537, 704, 737, 762
StuI AGGCCT 2 cut(s) 225, 1151
StyD4I CCNGG 1 cut(s) 1092
StyI CCWWGG 3 cut(s) 12, 1005, 1253
TaaI ACNGT 1 cut(s) 850
TaqI TCGA 4 cut(s) 161, 397, 406, 1232
TasI AATT 5 cut(s) 200, 345, 357, 894, 1223
TatI WGTACW 1 cut(s) 924
TauI GCSGC 2 cut(s) 263, 937
TfiI GAWTC 2 cut(s) 30, 295
Tru1I TTAA 6 cut(s) 195, 249, 350, 500, 654, 897
Tru9I TTAA 6 cut(s) 195, 249, 350, 500, 654, 897
TscAI CASTG 5 cut(s) 48, 305, 855, 1065, 1142
TseFI GTSAC 1 cut(s) 940
TseI GCWGC 4 cut(s) 91, 740, 1001, 1076
Tsp45I GTSAC 1 cut(s) 940
TspDTI ATGAA 4 cut(s) 62, 531, 1005, 1132
TspRI CASTG 5 cut(s) 48, 305, 855, 1065, 1142
Van91I CCANNNNNTGG 1 cut(s) 588
Vha464I CTTAAG 1 cut(s) 653
VneI GTGCAC 2 cut(s) 813, 985
VpaK11BI GGWCC 1 cut(s) 52
XceI RCATGY 2 cut(s) 923, 941
XhoI CTCGAG 2 cut(s) 396, 405
XmnI GAANNNNTTC 1 cut(s) 567
XspI CTAG 6 cut(s) 177, 221, 537, 704, 737, 762
Zsp2I ATGCAT 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.