Rroxscaffold_2G00098120

1-acyl-sn-glycerol-3-phosphate acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001488
Physical Location & Seq
Reverse (-)
19253793 .. 19293531
39739 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00098120.1

Sequence Viewer

Length: 1188 bp
ATGGTTTTGCCCATGGCGATTGCACTTGGAATTCTCTTTGCAGTGGTCGTGGTCCTTTATCCGCTAATCCTTCATCTAATTCCGGTGGTGCTGCTCTGCGTCTCAGGCCTCTTTGCCAATCTGGTTCAGTCGTTTTGCTTTGTTTTTATCTGGCCGATCTCAAAGAATGCATACACAAGGATAAACGGCGTGGTTAAAGAATTGGATTGGCTGGTTCTGCTAGGCCTCATTGATTGGTGTGCTGGCGTTAAGATCCTAGAGTGCGTAGAGCAGGAAAACAGTCATTTAAAGGGTGAAGAGCATGAACTTGTCATATCCAGTGCTAGAAATGATGCCAATCCTCTTCTTGAATTGGTTCTCGCTCAGTGGTCAGGTTGCTTTGGCAGTTTATTGGCTGTCATAAAGACATCAGCAAGATACATTCCGGTCAGAGGGTGGCCAATGTGGTTTTCTGAATATGTTTTTTCAGAAAGAAGTGCCCATGATGCAAGAAAACTTAAGTCAGATCTAAAGGACTTCCCTCAGCCCTTTTGGTTTTCTGTTGTCCTAGAAAGAACTGGTTTTACTCAGGGAGAGCTTCTAGCTGCACAGAGGCTTCCTGTCCCTAGCAAGGTTTTGAGTCCTGATACTGAGGATTTGGTCTATGCAGTAAGAAGTGCGTACTCTGTTGTTCCATCCATTTATGTTATAACAGTGGCTATTCCTAAAACTTCACCTCCAACTACAGTTGAAAGTGTAATTAAAGGGGGACCTTCTGCGGTGCATGTGTACATTAAAAGGCATGCGACTAAAAAATGGCCTGAAACTGATGATGCTGTTGAAAAGTGGTGCACAGAAATACTTGAAGCCGAGGATGCATTATTGGACGAACATATAGCAGAACGAACTTTTGGCGTTAAAGGATTGCAAGCTATCGGTCAGCCACTAAAGTGTTTCTTGGTTATATCTCTAATTGTGTTGTGGGCTCTAAAGTTCAACTTTGTCTGCTGTTCCACACTGCTTGTATTGAGTGCTGCCCTCTTTACTGGTCGGATGCTTACTCTGTTCGGCTGTGGAGTGCTTTCGCTGTTGCGGTGTTTCATGGAAGCCGCTATAGCAAACATTAGTTGGTCAAAGTACCTCAAGCCCATTTGTGGCTGGTTGATTTACAATCTTGGAGAGTTGTGTTTGTTGCTCCCTTGTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko00564 ko01100 ko01110 ko04072 map00561 map00564 map01100 map01110 map04072
Pfam Domains
Protein Families
Acyltransf_C Acyltransferase

Protein Analysis

395

Amino Acids

43.92

Weight (kDa)

6.2

Isoelectric Point (pI)

34.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyltransf_C PF16076 246 - 316 2.7e-12 Acyltransferase C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 689
AciI CCGC 4 cut(s) 62, 758, 1072, 1089
AclWI GGATC 1 cut(s) 247
AcoI YGGCCR 2 cut(s) 152, 437
AcsI RAATTY 1 cut(s) 30
AfaI GTAC 3 cut(s) 662, 770, 1118
AfiI CCNNNNNNNGG 3 cut(s) 431, 610, 1133
AflII CTTAAG 1 cut(s) 497
AgsI TTSAA 5 cut(s) 350, 731, 821, 845, 976
AjuI GAANNNNNNNTTGG 4 cut(s) 433, 465, 873, 905
AleI CACNNNNGTG 1 cut(s) 928
AluBI AGCT 3 cut(s) 577, 584, 911
AluI AGCT 3 cut(s) 577, 584, 911
Alw21I GWGCWC 1 cut(s) 833
Alw26I GTCTC 1 cut(s) 106
Alw44I GTGCAC 1 cut(s) 829
AlwI GGATC 1 cut(s) 247
AoxI GGCC 5 cut(s) 106, 152, 223, 437, 797
ApaLI GTGCAC 1 cut(s) 829
ApeKI GCWGC 3 cut(s) 91, 584, 1013
ApoI RAATTY 1 cut(s) 30
Asp700I GAANNNNTTC 1 cut(s) 354
AspS9I GGNCC 2 cut(s) 52, 749
AsuHPI GGTGA 2 cut(s) 305, 705
AvaII GGWCC 2 cut(s) 52, 749
BaeGI GKGCMC 2 cut(s) 481, 833
BalI TGGCCA 1 cut(s) 439
BanII GRGCYC 1 cut(s) 967
Bbv12I GWGCWC 1 cut(s) 833
BbvCI CCTCAGC 1 cut(s) 522
BbvI GCAGC 3 cut(s) 78, 571, 1000
BccI CCATC 1 cut(s) 682
BceAI ACGGC 1 cut(s) 202
BcoDI GTCTC 1 cut(s) 106
BfaI CTAG 6 cut(s) 221, 257, 324, 548, 581, 606
BfmI CTRYAG 2 cut(s) 723, 1092
BfrI CTTAAG 1 cut(s) 497
BglII AGATCT 1 cut(s) 505
BisI GCNGC 4 cut(s) 92, 585, 1014, 1089
BlsI GCNGC 4 cut(s) 93, 586, 1015, 1090
Bme18I GGWCC 2 cut(s) 52, 749
BmgT120I GGNCC 2 cut(s) 52, 749
BmiI GGNNCC 1 cut(s) 750
BmsI GCATC 5 cut(s) 322, 475, 802, 844, 1023
Bpu10I CCTNAGC 1 cut(s) 522
BpuEI CTTGAG 1 cut(s) 1106
BsaBI GATNNNNATC 1 cut(s) 336
BsaJI CCNNGG 2 cut(s) 12, 849
BsaWI WCCGGW 2 cut(s) 82, 424
BsaXI ACNNNNNCTCC 2 cut(s) 700, 730
Bsc4I CCNNNNNNNGG 3 cut(s) 431, 610, 1133
Bse1I ACTGG 3 cut(s) 318, 562, 1030
Bse8I GATNNNNATC 1 cut(s) 336
BseDI CCNNGG 2 cut(s) 12, 849
BseGI GGATG 3 cut(s) 674, 859, 1038
BseJI GATNNNNATC 1 cut(s) 336
BseLI CCNNNNNNNGG 3 cut(s) 431, 610, 1133
BseMII CTCAG 5 cut(s) 117, 377, 536, 581, 621
BseNI ACTGG 3 cut(s) 318, 562, 1030
BseSI GKGCMC 2 cut(s) 481, 833
BseXI GCAGC 3 cut(s) 78, 571, 1000
BsgI GTGCAG 1 cut(s) 570
BshFI GGCC 5 cut(s) 108, 154, 225, 439, 799
BsiHKAI GWGCWC 1 cut(s) 833
BsiSI CCGG 2 cut(s) 83, 425
BslFI GGGAC 2 cut(s) 587, 762
BslI CCNNNNNNNGG 3 cut(s) 431, 610, 1133
BsmAI GTCTC 1 cut(s) 106
BsmBI CGTCTC 1 cut(s) 106
BsmFI GGGAC 2 cut(s) 587, 762
BsmI GAATGC 1 cut(s) 172
BsnI GGCC 5 cut(s) 108, 154, 225, 439, 799
Bsp1286I GDGCHC 3 cut(s) 481, 833, 967
Bsp1407I TGTACA 1 cut(s) 768
Bsp143I GATC 3 cut(s) 156, 252, 505
Bsp19I CCATGG 1 cut(s) 12
BspACI CCGC 4 cut(s) 62, 758, 1072, 1089
BspANI GGCC 5 cut(s) 108, 154, 225, 439, 799
BspCNI CTCAG 5 cut(s) 116, 376, 535, 580, 622
BspLI GGNNCC 1 cut(s) 750
BspPI GGATC 1 cut(s) 247
BspQI GCTCTTC 1 cut(s) 291
BspTI CTTAAG 1 cut(s) 497
BsrGI TGTACA 1 cut(s) 768
BsrI ACTGG 3 cut(s) 318, 562, 1030
BssECI CCNNGG 2 cut(s) 12, 849
BssMI GATC 3 cut(s) 156, 252, 505
BssT1I CCWWGG 1 cut(s) 12
Bst4CI ACNGT 3 cut(s) 281, 694, 727
Bst6I CTCTTC 2 cut(s) 291, 348
BstAFI CTTAAG 1 cut(s) 497
BstAUI TGTACA 1 cut(s) 768
BstC8I GCNNGC 3 cut(s) 244, 783, 909
BstDEI CTNAG 5 cut(s) 103, 363, 522, 567, 630
BstDSI CCRYGG 1 cut(s) 12
BstF5I GGATG 3 cut(s) 674, 859, 1038
BstKTI GATC 3 cut(s) 159, 255, 508
BstMAI GTCTC 1 cut(s) 106
BstMBI GATC 3 cut(s) 156, 252, 505
BstMWI GCNNNNNNNGC 5 cut(s) 105, 217, 485, 854, 1094
BstNSI RCATGY 2 cut(s) 767, 785
BstSFI CTRYAG 2 cut(s) 723, 1092
BstSLI GKGCMC 2 cut(s) 481, 833
BstV1I GCAGC 3 cut(s) 78, 571, 1000
BstX2I RGATCY 2 cut(s) 252, 505
BstYI RGATCY 2 cut(s) 252, 505
BsuRI GGCC 5 cut(s) 108, 154, 225, 439, 799
BtgI CCRYGG 1 cut(s) 12
BtsCI GGATG 3 cut(s) 674, 859, 1038
BtsI GCAGTG 2 cut(s) 48, 995
BtsIMutI CAGTG 5 cut(s) 48, 325, 371, 699, 995
Cac8I GCNNGC 3 cut(s) 244, 783, 909
Cfr13I GGNCC 2 cut(s) 52, 749
CseI GACGC 1 cut(s) 88
Csp6I GTAC 3 cut(s) 661, 769, 1117
CspCI CAANNNNNGTGG 2 cut(s) 982, 1017
CviAII CATG 6 cut(s) 13, 302, 482, 764, 782, 1081
CviQI GTAC 3 cut(s) 661, 769, 1117
DdeI CTNAG 5 cut(s) 103, 363, 522, 567, 630
DpnI GATC 3 cut(s) 158, 254, 507
DpnII GATC 3 cut(s) 156, 252, 505
DraI TTTAAA 1 cut(s) 288
EaeI YGGCCR 2 cut(s) 152, 437
Eam1104I CTCTTC 2 cut(s) 291, 348
EarI CTCTTC 2 cut(s) 291, 348
Eco130I CCWWGG 1 cut(s) 12
Eco147I AGGCCT 2 cut(s) 108, 225
Eco24I GRGCYC 1 cut(s) 967
Eco47I GGWCC 2 cut(s) 52, 749
EcoO109I RGGNCCY 1 cut(s) 749
EcoRI GAATTC 1 cut(s) 30
EcoT14I CCWWGG 1 cut(s) 12
EcoT22I ATGCAT 2 cut(s) 172, 859
EcoT38I GRGCYC 1 cut(s) 967
ErhI CCWWGG 1 cut(s) 12
Esp3I CGTCTC 1 cut(s) 106
FaeI CATG 6 cut(s) 16, 305, 485, 767, 785, 1084
FalI AAGNNNNNCTT 4 cut(s) 920, 952, 962, 994
FaqI GGGAC 2 cut(s) 587, 762
FatI CATG 6 cut(s) 12, 301, 481, 763, 781, 1080
Fnu4HI GCNGC 4 cut(s) 92, 585, 1014, 1089
FokI GGATG 3 cut(s) 661, 866, 1045
FriOI GRGCYC 1 cut(s) 967
Fsp4HI GCNGC 4 cut(s) 92, 585, 1014, 1089
FspBI CTAG 6 cut(s) 221, 257, 324, 548, 581, 606
GluI GCNGC 4 cut(s) 92, 585, 1014, 1089
HaeIII GGCC 5 cut(s) 108, 154, 225, 439, 799
HapII CCGG 2 cut(s) 83, 425
HgaI GACGC 1 cut(s) 88
Hin1II CATG 6 cut(s) 16, 305, 485, 767, 785, 1084
HinfI GANTC 1 cut(s) 619
HpaII CCGG 2 cut(s) 83, 425
HphI GGTGA 2 cut(s) 305, 705
Hpy166II GTNNAC 2 cut(s) 769, 831
Hpy188I TCNGA 5 cut(s) 431, 454, 469, 505, 1032
Hpy188III TCNNGA 2 cut(s) 347, 623
Hpy8I GTNNAC 2 cut(s) 769, 831
HpyAV CCTTC 2 cut(s) 80, 762
HpyCH4III ACNGT 3 cut(s) 281, 694, 727
HpyF10VI GCNNNNNNNGC 5 cut(s) 105, 217, 485, 854, 1094
HpyF3I CTNAG 5 cut(s) 103, 363, 522, 567, 630
Hsp92II CATG 6 cut(s) 16, 305, 485, 767, 785, 1084
Kzo9I GATC 3 cut(s) 156, 252, 505
LguI GCTCTTC 1 cut(s) 291
LmnI GCTCC 1 cut(s) 1179
Lsp1109I GCAGC 3 cut(s) 78, 571, 1000
LweI GCATC 5 cut(s) 322, 475, 802, 844, 1023
MaeI CTAG 6 cut(s) 221, 257, 324, 548, 581, 606
MalI GATC 3 cut(s) 158, 254, 507
MboI GATC 3 cut(s) 156, 252, 505
MboII GAAGA 2 cut(s) 308, 335
MflI RGATCY 2 cut(s) 252, 505
MhlI GDGCHC 3 cut(s) 481, 833, 967
MlsI TGGCCA 1 cut(s) 439
MluCI AATT 6 cut(s) 30, 78, 200, 350, 738, 951
MluNI TGGCCA 1 cut(s) 439
MlyI GAGTC 1 cut(s) 628
MmeI TCCRAC 2 cut(s) 743, 1010
Mox20I TGGCCA 1 cut(s) 439
Mph1103I ATGCAT 2 cut(s) 172, 859
MroXI GAANNNNTTC 1 cut(s) 354
MscI TGGCCA 1 cut(s) 439
MseI TTAA 8 cut(s) 195, 249, 287, 498, 741, 774, 897, 1186
MslI CAYNNNNRTG 1 cut(s) 928
Msp20I TGGCCA 1 cut(s) 439
MspCI CTTAAG 1 cut(s) 497
MspI CCGG 2 cut(s) 83, 425
Mva1269I GAATGC 1 cut(s) 172
MwoI GCNNNNNNNGC 5 cut(s) 105, 217, 485, 854, 1094
NcoI CCATGG 1 cut(s) 12
NdeII GATC 3 cut(s) 156, 252, 505
NlaIII CATG 6 cut(s) 16, 305, 485, 767, 785, 1084
NlaIV GGNNCC 1 cut(s) 750
NmeAIII GCCGAG 1 cut(s) 874
NsiI ATGCAT 2 cut(s) 172, 859
NspI RCATGY 2 cut(s) 767, 785
OliI CACNNNNGTG 1 cut(s) 928
PaeI GCATGC 1 cut(s) 785
PceI AGGCCT 2 cut(s) 108, 225
PciSI GCTCTTC 1 cut(s) 291
PctI GAATGC 1 cut(s) 172
PdmI GAANNNNTTC 1 cut(s) 354
PkrI GCNGC 4 cut(s) 93, 586, 1015, 1090
PleI GAGTC 1 cut(s) 627
PpsI GAGTC 1 cut(s) 627
PpuMI RGGWCCY 1 cut(s) 749
PsiI TTATAA 1 cut(s) 689
Psp5II RGGWCCY 1 cut(s) 749
PspN4I GGNNCC 1 cut(s) 750
PspPI GGNCC 2 cut(s) 52, 749
PspPPI RGGWCCY 1 cut(s) 749
PsrI GAACNNNNNNTAC 2 cut(s) 547, 579
PsuI RGATCY 2 cut(s) 252, 505
RsaI GTAC 3 cut(s) 662, 770, 1118
RsaNI GTAC 3 cut(s) 661, 769, 1117
RseI CAYNNNNRTG 1 cut(s) 928
SapI GCTCTTC 1 cut(s) 291
SaqAI TTAA 8 cut(s) 195, 249, 287, 498, 741, 774, 897, 1186
SatI GCNGC 4 cut(s) 92, 585, 1014, 1089
Sau3AI GATC 3 cut(s) 156, 252, 505
Sau96I GGNCC 2 cut(s) 52, 749
SchI GAGTC 1 cut(s) 628
SduI GDGCHC 3 cut(s) 481, 833, 967
SetI ASST 8 cut(s) 376, 579, 586, 615, 718, 754, 913, 1122
SfaNI GCATC 5 cut(s) 322, 475, 802, 844, 1023
SfcI CTRYAG 2 cut(s) 723, 1092
SinI GGWCC 2 cut(s) 52, 749
SmiMI CAYNNNNRTG 1 cut(s) 928
SmlI CTYRAG 2 cut(s) 497, 1121
SmoI CTYRAG 2 cut(s) 497, 1121
SphI GCATGC 1 cut(s) 785
Sse9I AATT 6 cut(s) 30, 78, 200, 350, 738, 951
SseBI AGGCCT 2 cut(s) 108, 225
SsiI CCGC 4 cut(s) 62, 758, 1072, 1089
SspMI CTAG 6 cut(s) 221, 257, 324, 548, 581, 606
StuI AGGCCT 2 cut(s) 108, 225
StyI CCWWGG 1 cut(s) 12
TaaI ACNGT 3 cut(s) 281, 694, 727
TaqII GACCGA 1 cut(s) 905
TasI AATT 6 cut(s) 30, 78, 200, 350, 738, 951
TatI WGTACW 1 cut(s) 768
TauI GCSGC 1 cut(s) 1091
Tru1I TTAA 8 cut(s) 195, 249, 287, 498, 741, 774, 897, 1186
Tru9I TTAA 8 cut(s) 195, 249, 287, 498, 741, 774, 897, 1186
TscAI CASTG 5 cut(s) 48, 325, 371, 699, 1002
TseI GCWGC 3 cut(s) 91, 584, 1013
TspDTI ATGAA 3 cut(s) 62, 318, 1069
TspRI CASTG 5 cut(s) 48, 325, 371, 699, 1002
Vha464I CTTAAG 1 cut(s) 497
VneI GTGCAC 1 cut(s) 829
VpaK11BI GGWCC 2 cut(s) 52, 749
XapI RAATTY 1 cut(s) 30
XceI RCATGY 2 cut(s) 767, 785
XmnI GAANNNNTTC 1 cut(s) 354
XspI CTAG 6 cut(s) 221, 257, 324, 548, 581, 606
Zsp2I ATGCAT 2 cut(s) 172, 859
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.