RLG00000020324

1-acyl-sn-glycerol-3-phosphate acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001488
Physical Location & Seq
Reverse (-)
63728259 .. 63737656
9398 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020324

Sequence Viewer

Length: 1536 bp
ATGGCGATTGCACTTGGAATTCTCTTTGCAGTGGTCGTGGTCCTTTATCCGCTAATCCTTCATCTCATTCCGGTGGTGCTGCTCTGCGTCTCAGGCCTCTTTGCCAATCTGGCCCAGGCGATTTGCTTTGTTTGTATATGGCCGATTTCGAAGAATGCATACAAAAGGATAAACGCCGTGGTTAAAGAACTGGATTGGAGGGTTCTGCTAGGCCTCATTGATCGGTGTGCTGGCGTTAAGATCCTAGAGTGCGTAGAGGAGCAGGAAACCAGTCATTTAAAGGGTGAAGAACATGAACTTCTCATATCCAATGCTAGAAATGATGCCGATCCCTGGTCAGGTTGCCTTGGCAGTTTATTAGCTGTAATAAAGACATCAGCAAGATACATTCCGGTCATAGGATGGTCAATGAGGTTTTCTGAATATGTTTTTCCAGAAAGAAGTTGCGCCCATAATGCAAGGAAACTTAAGTCAGATCTAAAGGACTTCCCTCAGCCCTTTTGGTTATCTGTTGTCCTAGAAAGAACTCGTTTTACTCAGGGAGAGCTTCTAGCTGTGCAGAAGCTTCCTGTCCCTAGCAAGGTTTTGAGTCCTGACACTAAGGATTTGGTCTATGCAGCAAGACGTGCATACTCTGCTGTTCCAGCCATTTATGTTATAACAGTGGCTATTCCTAAAACTTCACCTTCACCCACACTTGAAAGTGTAATTAAAGGGGGACCTTCTGTGGTGCATGTGCACATCAAGTGGCATGCGACTAAAAAATGGCCTGAAACTGATGATGCTGTTGAAAAGTGGTGCACAGAAATACTTGCAGCCAAGGATGCATTATTGGACGAACATATAGTTGTTATATCACTAATTGTGTTGGGAGCTCTAAAGTTCAACTTTGTCTGCTGTTCCCCACTGCTTGTATTGAGTGCTGCCTTCTTTATTGGCCGGATGCTTACTCTGTTCGGTTGGGGAGTGCTTTCGCTGTTGCAGTGTTTCATGGAAGCCGCTATAGCAAACATTAGTTGGTCAGAGCACCTCAAGCCCATCTGTGGCTGGTTGATTACTATTCTTGGAGACTTGCTTTTGTTGCTCCCTTATCTAAAGGACTTCCCTCAGCCCTTTTGGTTATCTGTTGTCCTAGAAAGAACTGGTTTTACTCGGGGAGAGCTTCTAGCTGCACAGAGGCTTCCTGTCCCTAGCAAGGATTTGGTCTATGCAAGACGTGCGTACTCTGTTGTTCCAGCCATTTCTGTTATAACAGTGGCTACTCCTAAAACTTCACCTCCAACTACAGTTGAAAGTGTAATTAAAGGGGGACCTTCTGTGGTGCATGTGTACATTAAAAGGCATGCGACTAAAAAATGGCCTGAAACTGATGATGCTGTTGAAAAGTGGTGCACAGAAATACTTGCAGCCAAGTGTCTCATGGAAGCCGCTATAGCAAACATTAGTTGGTCAAAGCACCTCAAGCCCATCTGTGGCTGGTTGATTTTAAATGTAGGAGAGTTGTGTTTGTTGCTCCCTTGTGATACTGGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko00564 ko01100 ko01110 ko04072 map00561 map00564 map01100 map01110 map04072
Pfam Domains
Protein Families
Acyltransf_C Acyltransferase

Protein Analysis

512

Amino Acids

56.55

Weight (kDa)

8.47

Isoelectric Point (pI)

42.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyltransf_C PF16076 236 - 282 1.1e-08 Acyltransferase C-terminus
Acyltransf_C PF16076 433 - 468 2.6e-06 Acyltransferase C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 659, 1250
AciI CCGC 3 cut(s) 50, 999, 1428
AclWI GGATC 2 cut(s) 235, 323
AcoI YGGCCR 2 cut(s) 140, 937
AcsI RAATTY 1 cut(s) 18
AfaI GTAC 2 cut(s) 1223, 1331
AfiI CCNNNNNNNGG 7 cut(s) 333, 338, 398, 580, 1043, 1195, 1472
AflII CTTAAG 1 cut(s) 467
AgsI TTSAA 5 cut(s) 701, 791, 886, 1292, 1382
AjiI CACGTC 2 cut(s) 626, 1217
AjnI CCWGG 2 cut(s) 114, 332
AluBI AGCT 7 cut(s) 362, 547, 554, 565, 875, 1162, 1169
AluI AGCT 7 cut(s) 362, 547, 554, 565, 875, 1162, 1169
Alw21I GWGCWC 5 cut(s) 741, 803, 877, 1029, 1394
Alw26I GTCTC 3 cut(s) 94, 1062, 1421
Alw44I GTGCAC 3 cut(s) 737, 799, 1390
AlwI GGATC 2 cut(s) 235, 323
Ama87I CYCGRG 1 cut(s) 1152
AoxI GGCC 7 cut(s) 94, 111, 140, 211, 767, 937, 1358
ApaLI GTGCAC 3 cut(s) 737, 799, 1390
ApeKI GCWGC 6 cut(s) 79, 617, 815, 923, 1169, 1406
ApoI RAATTY 1 cut(s) 18
AspLEI GCGC 1 cut(s) 449
AspS9I GGNCC 4 cut(s) 40, 112, 719, 1310
AsuHPI GGTGA 4 cut(s) 296, 675, 681, 1266
AsuII TTCGAA 1 cut(s) 149
AvaI CYCGRG 1 cut(s) 1152
AvaII GGWCC 3 cut(s) 40, 719, 1310
BaeGI GKGCMC 3 cut(s) 741, 803, 1394
BanII GRGCYC 1 cut(s) 877
BarI GAAGNNNNNNTAC 2 cut(s) 143, 175
Bbv12I GWGCWC 5 cut(s) 741, 803, 877, 1029, 1394
BbvCI CCTCAGC 2 cut(s) 492, 1107
BbvI GCAGC 6 cut(s) 66, 629, 827, 910, 1156, 1418
BccI CCATC 3 cut(s) 396, 1046, 1475
BceAI ACGGC 1 cut(s) 161
BciT130I CCWGG 2 cut(s) 116, 334
BcoDI GTCTC 3 cut(s) 94, 1062, 1421
BfaI CTAG 9 cut(s) 209, 245, 315, 518, 551, 576, 1133, 1166, 1191
BfmI CTRYAG 3 cut(s) 1002, 1284, 1431
BfrI CTTAAG 1 cut(s) 467
BglI GCCNNNNNGGC 1 cut(s) 110
BglII AGATCT 1 cut(s) 475
BisI GCNGC 8 cut(s) 80, 618, 816, 924, 999, 1170, 1407, 1428
BlsI GCNGC 8 cut(s) 81, 619, 817, 925, 1000, 1171, 1408, 1429
Bme1390I CCNGG 2 cut(s) 116, 334
Bme18I GGWCC 3 cut(s) 40, 719, 1310
BmeT110I CYCGRG 1 cut(s) 1152
BmgBI CACGTC 2 cut(s) 626, 1217
BmgT120I GGNCC 4 cut(s) 40, 112, 719, 1310
BmiI GGNNCC 2 cut(s) 720, 1311
BmrFI CCNGG 2 cut(s) 116, 334
BmsI GCATC 5 cut(s) 313, 772, 814, 933, 1363
Bpu10I CCTNAGC 2 cut(s) 492, 1107
Bpu14I TTCGAA 1 cut(s) 149
BpuEI CTTGAG 2 cut(s) 1016, 1445
BsaBI GATNNNNATC 1 cut(s) 327
BsaJI CCNNGG 5 cut(s) 114, 177, 332, 346, 819
BsaWI WCCGGW 2 cut(s) 70, 391
BsaXI ACNNNNNCTCC 2 cut(s) 1261, 1291
Bsc4I CCNNNNNNNGG 7 cut(s) 333, 338, 398, 580, 1043, 1195, 1472
Bse1I ACTGG 4 cut(s) 195, 270, 1147, 1531
Bse8I GATNNNNATC 1 cut(s) 327
BseBI CCWGG 2 cut(s) 116, 334
BseDI CCNNGG 5 cut(s) 114, 177, 332, 346, 819
BseGI GGATG 3 cut(s) 407, 829, 948
BseJI GATNNNNATC 1 cut(s) 327
BseLI CCNNNNNNNGG 7 cut(s) 333, 338, 398, 580, 1043, 1195, 1472
BseMII CTCAG 4 cut(s) 105, 506, 551, 1121
BseNI ACTGG 4 cut(s) 195, 270, 1147, 1531
BseRI GAGGAG 1 cut(s) 272
BseSI GKGCMC 3 cut(s) 741, 803, 1394
BseXI GCAGC 6 cut(s) 66, 629, 827, 910, 1156, 1418
BsgI GTGCAG 2 cut(s) 578, 1155
BshFI GGCC 7 cut(s) 96, 113, 142, 213, 769, 939, 1360
BsiHKAI GWGCWC 5 cut(s) 741, 803, 877, 1029, 1394
BsiHKCI CYCGRG 1 cut(s) 1152
BsiSI CCGG 3 cut(s) 71, 392, 940
BslFI GGGAC 4 cut(s) 557, 732, 1172, 1323
BslI CCNNNNNNNGG 7 cut(s) 333, 338, 398, 580, 1043, 1195, 1472
BsmAI GTCTC 3 cut(s) 94, 1062, 1421
BsmBI CGTCTC 1 cut(s) 94
BsmFI GGGAC 4 cut(s) 557, 732, 1172, 1323
BsmI GAATGC 1 cut(s) 160
BsnI GGCC 7 cut(s) 96, 113, 142, 213, 769, 939, 1360
BsoBI CYCGRG 1 cut(s) 1152
Bsp119I TTCGAA 1 cut(s) 149
Bsp1286I GDGCHC 5 cut(s) 741, 803, 877, 1029, 1394
Bsp1407I TGTACA 1 cut(s) 1329
Bsp143I GATC 4 cut(s) 220, 240, 328, 475
BspACI CCGC 3 cut(s) 50, 999, 1428
BspANI GGCC 7 cut(s) 96, 113, 142, 213, 769, 939, 1360
BspCNI CTCAG 4 cut(s) 104, 505, 550, 1120
BspLI GGNNCC 2 cut(s) 720, 1311
BspPI GGATC 2 cut(s) 235, 323
BspT104I TTCGAA 1 cut(s) 149
BspTI CTTAAG 1 cut(s) 467
BsrGI TGTACA 1 cut(s) 1329
BsrI ACTGG 4 cut(s) 195, 270, 1147, 1531
BssECI CCNNGG 5 cut(s) 114, 177, 332, 346, 819
BssMI GATC 4 cut(s) 220, 240, 328, 475
BssT1I CCWWGG 2 cut(s) 346, 819
Bst2UI CCWGG 2 cut(s) 116, 334
Bst4CI ACNGT 3 cut(s) 664, 1255, 1288
BstAFI CTTAAG 1 cut(s) 467
BstAPI GCANNNNNTGC 3 cut(s) 626, 635, 1217
BstAUI TGTACA 1 cut(s) 1329
BstBI TTCGAA 1 cut(s) 149
BstC8I GCNNGC 3 cut(s) 232, 753, 1344
BstDEI CTNAG 5 cut(s) 91, 492, 537, 600, 1107
BstDSI CCRYGG 1 cut(s) 177
BstF5I GGATG 3 cut(s) 407, 829, 948
BstHHI GCGC 1 cut(s) 449
BstKTI GATC 4 cut(s) 223, 243, 331, 478
BstMAI GTCTC 3 cut(s) 94, 1062, 1421
BstMBI GATC 4 cut(s) 220, 240, 328, 475
BstNI CCWGG 2 cut(s) 116, 334
BstNSI RCATGY 4 cut(s) 737, 755, 1328, 1346
BstSCI CCNGG 2 cut(s) 114, 332
BstSFI CTRYAG 3 cut(s) 1002, 1284, 1431
BstSLI GKGCMC 3 cut(s) 741, 803, 1394
BstV1I GCAGC 6 cut(s) 66, 629, 827, 910, 1156, 1418
BstX2I RGATCY 2 cut(s) 240, 475
BstYI RGATCY 2 cut(s) 240, 475
BsuRI GGCC 7 cut(s) 96, 113, 142, 213, 769, 939, 1360
BtgI CCRYGG 1 cut(s) 177
BtrI CACGTC 2 cut(s) 626, 1217
BtsCI GGATG 3 cut(s) 407, 829, 948
BtsI GCAGTG 3 cut(s) 36, 905, 989
BtsIMutI CAGTG 5 cut(s) 36, 669, 905, 989, 1260
Cac8I GCNNGC 3 cut(s) 232, 753, 1344
CfoI GCGC 1 cut(s) 449
Cfr13I GGNCC 4 cut(s) 40, 112, 719, 1310
CseI GACGC 1 cut(s) 76
Csp6I GTAC 2 cut(s) 1222, 1330
CviAII CATG 7 cut(s) 293, 734, 752, 991, 1325, 1343, 1420
CviQI GTAC 2 cut(s) 1222, 1330
DdeI CTNAG 5 cut(s) 91, 492, 537, 600, 1107
DpnI GATC 4 cut(s) 222, 242, 330, 477
DpnII GATC 4 cut(s) 220, 240, 328, 475
DraI TTTAAA 2 cut(s) 279, 1488
EaeI YGGCCR 2 cut(s) 140, 937
Ecl136II GAGCTC 1 cut(s) 875
Eco130I CCWWGG 2 cut(s) 346, 819
Eco147I AGGCCT 2 cut(s) 96, 213
Eco24I GRGCYC 1 cut(s) 877
Eco47I GGWCC 3 cut(s) 40, 719, 1310
Eco53kI GAGCTC 1 cut(s) 875
Eco88I CYCGRG 1 cut(s) 1152
EcoICRI GAGCTC 1 cut(s) 875
EcoO109I RGGNCCY 2 cut(s) 719, 1310
EcoRI GAATTC 1 cut(s) 18
EcoRII CCWGG 2 cut(s) 114, 332
EcoT14I CCWWGG 2 cut(s) 346, 819
EcoT22I ATGCAT 2 cut(s) 160, 829
EcoT38I GRGCYC 1 cut(s) 877
ErhI CCWWGG 2 cut(s) 346, 819
Esp3I CGTCTC 1 cut(s) 94
FaeI CATG 7 cut(s) 296, 737, 755, 994, 1328, 1346, 1423
FalI AAGNNNNNCTT 2 cut(s) 872, 904
FaqI GGGAC 4 cut(s) 557, 732, 1172, 1323
FatI CATG 7 cut(s) 292, 733, 751, 990, 1324, 1342, 1419
Fnu4HI GCNGC 8 cut(s) 80, 618, 816, 924, 999, 1170, 1407, 1428
FokI GGATG 3 cut(s) 414, 836, 955
FriOI GRGCYC 1 cut(s) 877
Fsp4HI GCNGC 8 cut(s) 80, 618, 816, 924, 999, 1170, 1407, 1428
FspBI CTAG 9 cut(s) 209, 245, 315, 518, 551, 576, 1133, 1166, 1191
GlaI GCGC 1 cut(s) 448
GluI GCNGC 8 cut(s) 80, 618, 816, 924, 999, 1170, 1407, 1428
HaeIII GGCC 7 cut(s) 96, 113, 142, 213, 769, 939, 1360
HapII CCGG 3 cut(s) 71, 392, 940
HgaI GACGC 1 cut(s) 76
HhaI GCGC 1 cut(s) 449
Hin1II CATG 7 cut(s) 296, 737, 755, 994, 1328, 1346, 1423
Hin6I GCGC 1 cut(s) 447
HinP1I GCGC 1 cut(s) 447
HindIII AAGCTT 1 cut(s) 563
HinfI GANTC 1 cut(s) 589
HpaII CCGG 3 cut(s) 71, 392, 940
HphI GGTGA 4 cut(s) 296, 675, 681, 1266
Hpy166II GTNNAC 4 cut(s) 739, 801, 1330, 1392
Hpy188I TCNGA 3 cut(s) 421, 475, 1024
Hpy188III TCNNGA 2 cut(s) 434, 593
Hpy8I GTNNAC 4 cut(s) 739, 801, 1330, 1392
HpyAV CCTTC 5 cut(s) 68, 696, 732, 937, 1323
HpyCH4III ACNGT 3 cut(s) 664, 1255, 1288
HpyCH4IV ACGT 2 cut(s) 625, 1216
HpyF3I CTNAG 5 cut(s) 91, 492, 537, 600, 1107
HpySE526I ACGT 2 cut(s) 625, 1216
Hsp92II CATG 7 cut(s) 296, 737, 755, 994, 1328, 1346, 1423
HspAI GCGC 1 cut(s) 447
Kzo9I GATC 4 cut(s) 220, 240, 328, 475
LmnI GCTCC 4 cut(s) 259, 872, 1089, 1518
Lsp1109I GCAGC 6 cut(s) 66, 629, 827, 910, 1156, 1418
LweI GCATC 5 cut(s) 313, 772, 814, 933, 1363
MaeI CTAG 9 cut(s) 209, 245, 315, 518, 551, 576, 1133, 1166, 1191
MaeII ACGT 2 cut(s) 625, 1216
MalI GATC 4 cut(s) 222, 242, 330, 477
MboI GATC 4 cut(s) 220, 240, 328, 475
MboII GAAGA 2 cut(s) 163, 299
MflI RGATCY 2 cut(s) 240, 475
MhlI GDGCHC 5 cut(s) 741, 803, 877, 1029, 1394
MluCI AATT 4 cut(s) 18, 708, 861, 1299
MlyI GAGTC 1 cut(s) 598
MmeI TCCRAC 1 cut(s) 1304
Mph1103I ATGCAT 2 cut(s) 160, 829
MseI TTAA 8 cut(s) 183, 237, 278, 468, 711, 1302, 1335, 1487
MslI CAYNNNNRTG 1 cut(s) 71
MspCI CTTAAG 1 cut(s) 467
MspI CCGG 3 cut(s) 71, 392, 940
MspR9I CCNGG 2 cut(s) 116, 334
Mva1269I GAATGC 1 cut(s) 160
MvaI CCWGG 2 cut(s) 116, 334
NdeII GATC 4 cut(s) 220, 240, 328, 475
NlaIII CATG 7 cut(s) 296, 737, 755, 994, 1328, 1346, 1423
NlaIV GGNNCC 2 cut(s) 720, 1311
NsiI ATGCAT 2 cut(s) 160, 829
NspI RCATGY 4 cut(s) 737, 755, 1328, 1346
NspV TTCGAA 1 cut(s) 149
PaeI GCATGC 2 cut(s) 755, 1346
PceI AGGCCT 2 cut(s) 96, 213
PctI GAATGC 1 cut(s) 160
PkrI GCNGC 8 cut(s) 81, 619, 817, 925, 1000, 1171, 1408, 1429
PleI GAGTC 1 cut(s) 597
PpsI GAGTC 1 cut(s) 597
PpuMI RGGWCCY 2 cut(s) 719, 1310
PsiI TTATAA 2 cut(s) 659, 1250
Psp124BI GAGCTC 1 cut(s) 877
Psp5II RGGWCCY 2 cut(s) 719, 1310
Psp6I CCWGG 2 cut(s) 114, 332
PspGI CCWGG 2 cut(s) 114, 332
PspN4I GGNNCC 2 cut(s) 720, 1311
PspPI GGNCC 4 cut(s) 40, 112, 719, 1310
PspPPI RGGWCCY 2 cut(s) 719, 1310
PsrI GAACNNNNNNTAC 4 cut(s) 517, 549, 1132, 1164
PsuI RGATCY 2 cut(s) 240, 475
RsaI GTAC 2 cut(s) 1223, 1331
RsaNI GTAC 2 cut(s) 1222, 1330
RseI CAYNNNNRTG 1 cut(s) 71
SacI GAGCTC 1 cut(s) 877
SaqAI TTAA 8 cut(s) 183, 237, 278, 468, 711, 1302, 1335, 1487
SatI GCNGC 8 cut(s) 80, 618, 816, 924, 999, 1170, 1407, 1428
Sau3AI GATC 4 cut(s) 220, 240, 328, 475
Sau96I GGNCC 4 cut(s) 40, 112, 719, 1310
SchI GAGTC 1 cut(s) 598
ScrFI CCNGG 2 cut(s) 116, 334
SduI GDGCHC 5 cut(s) 741, 803, 877, 1029, 1394
SfaNI GCATC 5 cut(s) 313, 772, 814, 933, 1363
SfcI CTRYAG 3 cut(s) 1002, 1284, 1431
SfuI TTCGAA 1 cut(s) 149
SinI GGWCC 3 cut(s) 40, 719, 1310
SmiMI CAYNNNNRTG 1 cut(s) 71
SmlI CTYRAG 3 cut(s) 467, 1031, 1460
SmoI CTYRAG 3 cut(s) 467, 1031, 1460
SphI GCATGC 2 cut(s) 755, 1346
Sse9I AATT 4 cut(s) 18, 708, 861, 1299
SseBI AGGCCT 2 cut(s) 96, 213
SsiI CCGC 3 cut(s) 50, 999, 1428
SspMI CTAG 9 cut(s) 209, 245, 315, 518, 551, 576, 1133, 1166, 1191
SstI GAGCTC 1 cut(s) 877
StuI AGGCCT 2 cut(s) 96, 213
StyD4I CCNGG 2 cut(s) 114, 332
StyI CCWWGG 2 cut(s) 346, 819
TaaI ACNGT 3 cut(s) 664, 1255, 1288
TaiI ACGT 2 cut(s) 628, 1219
TaqI TCGA 1 cut(s) 149
TasI AATT 4 cut(s) 18, 708, 861, 1299
TatI WGTACW 1 cut(s) 1329
TauI GCSGC 2 cut(s) 1001, 1430
Tru1I TTAA 8 cut(s) 183, 237, 278, 468, 711, 1302, 1335, 1487
Tru9I TTAA 8 cut(s) 183, 237, 278, 468, 711, 1302, 1335, 1487
TscAI CASTG 5 cut(s) 36, 669, 912, 989, 1260
TseI GCWGC 6 cut(s) 79, 617, 815, 923, 1169, 1406
TspDTI ATGAA 3 cut(s) 50, 309, 979
TspRI CASTG 5 cut(s) 36, 669, 912, 989, 1260
Vha464I CTTAAG 1 cut(s) 467
VneI GTGCAC 3 cut(s) 737, 799, 1390
VpaK11BI GGWCC 3 cut(s) 40, 719, 1310
XapI RAATTY 1 cut(s) 18
XceI RCATGY 4 cut(s) 737, 755, 1328, 1346
XcmI CCANNNNNNNNNTGG 1 cut(s) 1417
XspI CTAG 9 cut(s) 209, 245, 315, 518, 551, 576, 1133, 1166, 1191
Zsp2I ATGCAT 2 cut(s) 160, 829
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.