Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001488

Physical Location & Seq

Genomic Coordinates Reverse (-)

16655218 .. 16655526

Gene Structure 309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0190100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGTGTCTGCTTCCACAACTGCAATGGCCGAGAAGATTTCTTGGTATTGTGCTTTGTTCTTGGCCCTGATGCTGGTTTTAAGCTGCTGTCAATCAAGCGAAAGCGAATTCAATTCGAGAATGCTACAAGTCCAAAGGAGTCGTTTGAACAAGCCGTGTGATGAAATTTACGTGGTTCATGAAGGCGAGACGCTGCAAACGATTAGTGAAAAATGTGAAGATCCTTACATTGTTGAAGAGAATCCACACATTCATGACCCTGATGATGTTTTCCCTGGCTTGGTCATTAAGATTACTTCATACAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003841 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008374 GO:0012505 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0042171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071617

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04072 map00561 map00564 map01100 map01110 map04072

Pfam Domains

Protein Families

Acyltransf_C Acyltransferase

Protein Analysis

102

Amino Acids

11.6

Weight (kDa)

4.76

Isoelectric Point (pI)

53.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57650
fragaria_vesca	FvH4_6g23240 FvH4_6g23240 FvH4_6g23240 FvH4_6g36950 FvH4_6g36960 FvH4_6g36962
malus_domestica	MD12G1066700.v1.1 MD14G1067300.v1.1
prunus_persica	Prupe.7G067600_v2.0.a1
pyrus_communis	pycom12g05810 pycom14g05530
rosa_chinensis	RchiOBHm_Chr2g0149391 RchiOBHm_Chr2g0149421 RchiOBHm_Chr2g0149441 RchiOBHm_Chr2g0149461 RchiOBHm_Chr2g0149471 RchiOBHm_Chr3g0481071
rosa_laevigata	RLG00000020324 RLG00000020404 RLG00000020406 RLG00000020407 RLG00000023423
rosa_multiflora	Rmu_co8437371.1_g000001 Rmu_sc0000873.1_g000022 Rmu_sc0000873.1_g000026 Rmu_sc0000873.1_g000027 Rmu_sc0000873.1_g000029 Rmu_sc0001551.1_g000024 Rmu_sc0002187.1_g000054
rosa_roxburghii	Rroxscaffold_2G00098120 Rroxscaffold_2G00098130 Rroxscaffold_6G00400660
rosa_rugosa	Rorug03G0190000 Rorug03G0190100 Rorug04G0357400 Rorug04G0357500 Rorug04G0357600
rosa_samantha	Rh3AG240300 Rh3BG276000 Rh3CG271300 Rh3DG267300 Rh5BG363100
rosa_wichuraiana	Rw2G038400 Rw2G038410 Rw2G038420 Rw2G038430 Rw2G038440 Rw2G038450 Rw3G021460 Rw6G011250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	215
AcoI	YGGCCR	1 cut(s)	27
AcsI	RAATTY	2 cut(s)	107, 165
AfiI	CCNNNNNNNGG	2 cut(s)	73, 280
AgsI	TTSAA	3 cut(s)	112, 148, 236
AjnI	CCWGG	1 cut(s)	274
AluBI	AGCT	1 cut(s)	84
AluI	AGCT	1 cut(s)	84
Alw26I	GTCTC	1 cut(s)	182
AlwI	GGATC	1 cut(s)	215
AoxI	GGCC	2 cut(s)	27, 63
ApeKI	GCWGC	2 cut(s)	84, 193
ApoI	RAATTY	2 cut(s)	107, 165
AspS9I	GGNCC	1 cut(s)	64
BbvI	GCAGC	2 cut(s)	71, 180
BceAI	ACGGC	1 cut(s)	139
BciT130I	CCWGG	1 cut(s)	276
BcoDI	GTCTC	1 cut(s)	182
BisI	GCNGC	2 cut(s)	85, 194
BlsI	GCNGC	2 cut(s)	86, 195
Bme1390I	CCNGG	1 cut(s)	276
BmgT120I	GGNCC	1 cut(s)	64
BmrFI	CCNGG	1 cut(s)	276
BmsI	GCATC	1 cut(s)	60
BsaAI	YACGTR	1 cut(s)	172
BsaJI	CCNNGG	1 cut(s)	274
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 280
Bse3DI	GCAATG	1 cut(s)	30
BseBI	CCWGG	1 cut(s)	276
BseDI	CCNNGG	1 cut(s)	274
BseLI	CCNNNNNNNGG	2 cut(s)	73, 280
BseMI	GCAATG	1 cut(s)	30
BseXI	GCAGC	2 cut(s)	71, 180
BshFI	GGCC	2 cut(s)	29, 65
BslI	CCNNNNNNNGG	2 cut(s)	73, 280
BsmAI	GTCTC	1 cut(s)	182
BsmBI	CGTCTC	1 cut(s)	182
BsmI	GAATGC	1 cut(s)	126
BsnI	GGCC	2 cut(s)	29, 65
Bsp143I	GATC	1 cut(s)	220
BspANI	GGCC	2 cut(s)	29, 65
BspHI	TCATGA	2 cut(s)	178, 253
BspPI	GGATC	1 cut(s)	215
BsrDI	GCAATG	1 cut(s)	30
BssECI	CCNNGG	1 cut(s)	274
BssMI	GATC	1 cut(s)	220
Bst2UI	CCWGG	1 cut(s)	276
Bst6I	CTCTTC	1 cut(s)	231
BstBAI	YACGTR	1 cut(s)	172
BstKTI	GATC	1 cut(s)	223
BstMAI	GTCTC	1 cut(s)	182
BstMBI	GATC	1 cut(s)	220
BstNI	CCWGG	1 cut(s)	276
BstSCI	CCNGG	1 cut(s)	274
BstV1I	GCAGC	2 cut(s)	71, 180
BstX2I	RGATCY	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	220
BsuRI	GGCC	2 cut(s)	29, 65
CciI	TCATGA	2 cut(s)	178, 253
Cfr13I	GGNCC	1 cut(s)	64
CseI	GACGC	1 cut(s)	199
CviAII	CATG	2 cut(s)	179, 254
CviJI	RGCY	5 cut(s)	29, 65, 84, 154, 279
CviKI_1	RGCY	5 cut(s)	29, 65, 84, 154, 279
DpnI	GATC	1 cut(s)	222
DpnII	GATC	1 cut(s)	220
EaeI	YGGCCR	1 cut(s)	27
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
EcoRI	GAATTC	1 cut(s)	107
EcoRII	CCWGG	1 cut(s)	274
Esp3I	CGTCTC	1 cut(s)	182
FaeI	CATG	2 cut(s)	182, 257
FaiI	YATR	3 cut(s)	180, 255, 301
FatI	CATG	2 cut(s)	178, 253
Fnu4HI	GCNGC	2 cut(s)	85, 194
Fsp4HI	GCNGC	2 cut(s)	85, 194
GluI	GCNGC	2 cut(s)	85, 194
HaeIII	GGCC	2 cut(s)	29, 65
HgaI	GACGC	1 cut(s)	199
Hin1II	CATG	2 cut(s)	182, 257
HinfI	GANTC	2 cut(s)	139, 241
Hpy188III	TCNNGA	3 cut(s)	117, 179, 254
HpyAV	CCTTC	1 cut(s)	176
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	2 cut(s)	23, 196
HpySE526I	ACGT	1 cut(s)	171
Hsp92II	CATG	2 cut(s)	182, 257
Kzo9I	GATC	1 cut(s)	220
LpnPI	CCDG	5 cut(s)	59, 80, 261, 273, 288
Lsp1109I	GCAGC	2 cut(s)	71, 180
LweI	GCATC	1 cut(s)	60
MaeII	ACGT	1 cut(s)	171
MalI	GATC	1 cut(s)	222
MboI	GATC	1 cut(s)	220
MboII	GAAGA	3 cut(s)	46, 230, 248
MflI	RGATCY	1 cut(s)	220
MluCI	AATT	3 cut(s)	107, 112, 165
MlyI	GAGTC	1 cut(s)	148
MseI	TTAA	2 cut(s)	80, 288
MslI	CAYNNNNRTG	1 cut(s)	252
MspR9I	CCNGG	1 cut(s)	276
Mva1269I	GAATGC	1 cut(s)	126
MvaI	CCWGG	1 cut(s)	276
NdeII	GATC	1 cut(s)	220
NlaIII	CATG	2 cut(s)	182, 257
NmeAIII	GCCGAG	1 cut(s)	55
PagI	TCATGA	2 cut(s)	178, 253
PcsI	WCGNNNNNNNCGW	1 cut(s)	197
PctI	GAATGC	1 cut(s)	126
PfeI	GAWTC	1 cut(s)	241
PkrI	GCNGC	2 cut(s)	86, 195
PleI	GAGTC	1 cut(s)	147
PpsI	GAGTC	1 cut(s)	147
Ppu21I	YACGTR	1 cut(s)	172
Psp6I	CCWGG	1 cut(s)	274
PspGI	CCWGG	1 cut(s)	274
PspPI	GGNCC	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	220
RseI	CAYNNNNRTG	1 cut(s)	252
SaqAI	TTAA	2 cut(s)	80, 288
SatI	GCNGC	2 cut(s)	85, 194
Sau3AI	GATC	1 cut(s)	220
Sau96I	GGNCC	1 cut(s)	64
SchI	GAGTC	1 cut(s)	148
ScrFI	CCNGG	1 cut(s)	276
SetI	ASST	2 cut(s)	86, 174
SfaNI	GCATC	1 cut(s)	60
SmiMI	CAYNNNNRTG	1 cut(s)	252
Sse9I	AATT	3 cut(s)	107, 112, 165
StyD4I	CCNGG	1 cut(s)	274
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	1 cut(s)	116
TasI	AATT	3 cut(s)	107, 112, 165
TfiI	GAWTC	1 cut(s)	241
Tru1I	TTAA	2 cut(s)	80, 288
Tru9I	TTAA	2 cut(s)	80, 288
TseI	GCWGC	2 cut(s)	84, 193
TspDTI	ATGAA	5 cut(s)	167, 177, 195, 242, 288
XapI	RAATTY	2 cut(s)	107, 165
XcmI	CCANNNNNNNNNTGG	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.