Rorug04G0357500

1-acyl-sn-glycerol-3-phosphate acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001488
Physical Location & Seq
Reverse (-)
52946764 .. 52951225
4462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0357500.1

Sequence Viewer

Length: 1083 bp
ATGGGCGTCGAGGCGGCCCACCATTCCGAACACCAGGCTGGCAGAGATGTCATCTGCCACGCCGTTGCCGGCGCCTCTGCTGGTTCCATGGCGGCTACGTTCGTCTGCCCTTTGGATGTCATCAAGACGAGATTACAGGTCCACGGCATGCCTACTGGTCAAAGAGGCAGTATCATTGTCACGAGCCTGCAGAACATATTAAAGACAGAGGGTGTTAGGGGGATGTATCGTGGCCTTTCACCAACAATTCTTGCACTGCTTCCGAATTGGGCAGTGTATTTCACAGTTTATGAACAACTCAAAGGTCTACTCCAGAAACATGAGGATGGTGGGGAACTCTCAATTGGTGAAAATATGATAGCTGCTGCCGGGGCTGGGGCTGCCACAGCCATTTCAACAAATCCATTGTGGGTTGTTAAGACAAGACTGCAAACACAAGGAATGAGGCCTGGTGTGGTTCCATACAAAAGCATGAGATCTGCTTTCACAAGGATAGCAACTGAGGAAGGGGTGCGAGGTTTATATAGTGGGATCATACCTTCTTTGGCTGGGATAAGTCATGTTGCAATTCAGTTTCCTGCTTATGAAAAGATAAAATCGTTCATGGCAAAAGAGGATAACACAACTGTTGATAAGTTAAAGCCCGGGAGAGTTGCCATTGCCTCGTCAATATCAAAAATATTGGCTTCTGTAATAACTTACCCTCACGAGGTCATACGTTCCAGGCTTCAAGAGCAAGGGCAGGCTAGACATATTCAACCCAAGTATGCAGGGGTTATTGATTGTATTAAGAAGGTGTTCCGAAAGGAAGGCTTTCCTGGTTTCTATAACGGCTGTGCTACAAATTTAATAAGAACAACACCTTCTGCTGTTATTACATTTACCAGTTACGAGATGATAGATAGGTTCTTGCGAAGGGTTGTTCTTCCAGAAAAGGAGCACTCACGAGACCCCCCAAAATCTGATGGCCACGACAAACCTCAGCAGGGAGATAGAGGCAATGTGGGAGATGATGATAAGACTTCTTTGCGGCAACTACAAACCCAATCAAGTAAGGGGGGTACAATTCCAGTTGGAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko00564 ko01100 ko01110 ko04072 map00561 map00564 map01100 map01110 map04072
Pfam Domains
Protein Families
Acyltransf_C Acyltransferase

Protein Analysis

360

Amino Acids

39.05

Weight (kDa)

9.53

Isoelectric Point (pI)

35.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 18 - 107 3.5e-26 Mitochondrial carrier protein
Mito_carr PF00153 112 - 204 4.8e-23 Mitochondrial carrier protein
Mito_carr PF00153 213 - 306 1.8e-23 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 71
AccI GTMKAC 1 cut(s) 307
AciI CCGC 3 cut(s) 14, 92, 1030
AclWI GGATC 1 cut(s) 539
AcoI YGGCCR 1 cut(s) 967
AcsI RAATTY 1 cut(s) 844
AcyI GRCGYC 2 cut(s) 6, 72
AfaI GTAC 1 cut(s) 1063
AfiI CCNNNNNNNGG 3 cut(s) 375, 709, 986
AgsI TTSAA 3 cut(s) 396, 731, 758
AjnI CCWGG 4 cut(s) 33, 448, 722, 817
AjuI GAANNNNNNNTTGG 2 cut(s) 327, 359
AluBI AGCT 1 cut(s) 362
AluI AGCT 1 cut(s) 362
Alw21I GWGCWC 1 cut(s) 942
Alw26I GTCTC 1 cut(s) 942
AlwI GGATC 1 cut(s) 539
Ama87I CYCGRG 1 cut(s) 644
AoxI GGCC 4 cut(s) 15, 232, 446, 967
ApeKI GCWGC 3 cut(s) 362, 365, 380
ApoI RAATTY 1 cut(s) 844
Asp700I GAANNNNTTC 2 cut(s) 797, 813
AspLEI GCGC 1 cut(s) 74
AspS9I GGNCC 2 cut(s) 16, 139
AsuC2I CCSGG 3 cut(s) 370, 645, 646
AsuHPI GGTGA 2 cut(s) 231, 359
AvaI CYCGRG 1 cut(s) 644
AvaII GGWCC 1 cut(s) 139
BalI TGGCCA 1 cut(s) 969
BanI GGYRCC 1 cut(s) 71
BauI CACGAG 3 cut(s) 181, 707, 945
Bbv12I GWGCWC 1 cut(s) 942
BbvCI CCTCAGC 1 cut(s) 981
BbvI GCAGC 3 cut(s) 349, 352, 367
BccI CCATC 2 cut(s) 320, 959
BceAI ACGGC 3 cut(s) 47, 160, 847
BciT130I CCWGG 4 cut(s) 35, 450, 724, 819
BcnI CCSGG 3 cut(s) 370, 645, 646
BcoDI GTCTC 1 cut(s) 942
BfaI CTAG 1 cut(s) 747
BfmI CTRYAG 1 cut(s) 188
BfoI RGCGCY 1 cut(s) 75
BglII AGATCT 1 cut(s) 476
BisI GCNGC 6 cut(s) 15, 93, 363, 366, 381, 1031
BlsI GCNGC 6 cut(s) 16, 94, 364, 367, 382, 1032
Bme1390I CCNGG 7 cut(s) 35, 370, 450, 645, 646, 724, 819
Bme18I GGWCC 1 cut(s) 139
BmeT110I CYCGRG 1 cut(s) 644
BmgT120I GGNCC 2 cut(s) 16, 139
BmiI GGNNCC 3 cut(s) 73, 85, 459
BmrFI CCNGG 7 cut(s) 35, 370, 450, 645, 646, 724, 819
BpmI CTGGAG 1 cut(s) 296
Bpu10I CCTNAGC 1 cut(s) 981
BpuMI CCSGG 3 cut(s) 370, 645, 646
BsaHI GRCGYC 2 cut(s) 6, 72
BsaI GGTCTC 1 cut(s) 942
BsaJI CCNNGG 4 cut(s) 87, 142, 369, 644
Bsc4I CCNNNNNNNGG 3 cut(s) 375, 709, 986
Bse118I RCCGGY 1 cut(s) 68
Bse1I ACTGG 3 cut(s) 160, 885, 1070
Bse3DI GCAATG 2 cut(s) 657, 1006
BseBI CCWGG 4 cut(s) 35, 450, 724, 819
BseDI CCNNGG 4 cut(s) 87, 142, 369, 644
BseGI GGATG 3 cut(s) 121, 228, 331
BseLI CCNNNNNNNGG 3 cut(s) 375, 709, 986
BseMI GCAATG 2 cut(s) 657, 1006
BseMII CTCAG 2 cut(s) 492, 995
BseNI ACTGG 3 cut(s) 160, 885, 1070
BseXI GCAGC 3 cut(s) 349, 352, 367
BseYI CCCAGC 2 cut(s) 374, 548
BshFI GGCC 4 cut(s) 17, 234, 448, 969
BshNI GGYRCC 1 cut(s) 71
BsiHKAI GWGCWC 1 cut(s) 942
BsiHKCI CYCGRG 1 cut(s) 644
BsiSI CCGG 3 cut(s) 69, 369, 645
BslI CCNNNNNNNGG 3 cut(s) 375, 709, 986
BsmAI GTCTC 1 cut(s) 942
BsnI GGCC 4 cut(s) 17, 234, 448, 969
Bso31I GGTCTC 1 cut(s) 942
BsoBI CYCGRG 1 cut(s) 644
Bsp1286I GDGCHC 1 cut(s) 942
Bsp143I GATC 2 cut(s) 476, 531
Bsp19I CCATGG 1 cut(s) 87
BspACI CCGC 3 cut(s) 14, 92, 1030
BspANI GGCC 4 cut(s) 17, 234, 448, 969
BspCNI CTCAG 2 cut(s) 493, 994
BspLI GGNNCC 3 cut(s) 73, 85, 459
BspMAI CTGCAG 1 cut(s) 192
BspPI GGATC 1 cut(s) 539
BspT107I GGYRCC 1 cut(s) 71
BspTNI GGTCTC 1 cut(s) 942
BsrDI GCAATG 2 cut(s) 657, 1006
BsrFI RCCGGY 1 cut(s) 68
BsrI ACTGG 3 cut(s) 160, 885, 1070
BssAI RCCGGY 1 cut(s) 68
BssECI CCNNGG 4 cut(s) 87, 142, 369, 644
BssMI GATC 2 cut(s) 476, 531
BssNI GRCGYC 2 cut(s) 6, 72
BssSI CACGAG 3 cut(s) 181, 707, 945
BssT1I CCWWGG 1 cut(s) 87
Bst2BI CACGAG 3 cut(s) 181, 707, 945
Bst2UI CCWGG 4 cut(s) 35, 450, 724, 819
Bst4CI ACNGT 2 cut(s) 286, 628
BstACI GRCGYC 2 cut(s) 6, 72
BstC8I GCNNGC 5 cut(s) 40, 70, 149, 188, 744
BstDEI CTNAG 2 cut(s) 501, 981
BstDSI CCRYGG 2 cut(s) 87, 142
BstF5I GGATG 3 cut(s) 121, 228, 331
BstH2I RGCGCY 1 cut(s) 75
BstHHI GCGC 1 cut(s) 74
BstKTI GATC 2 cut(s) 479, 534
BstMAI GTCTC 1 cut(s) 942
BstMBI GATC 2 cut(s) 476, 531
BstMWI GCNNNNNNNGC 4 cut(s) 371, 380, 386, 733
BstNI CCWGG 4 cut(s) 35, 450, 724, 819
BstNSI RCATGY 1 cut(s) 151
BstSCI CCNGG 7 cut(s) 33, 368, 448, 643, 644, 722, 817
BstSFI CTRYAG 1 cut(s) 188
BstV1I GCAGC 3 cut(s) 349, 352, 367
BstX2I RGATCY 1 cut(s) 476
BstYI RGATCY 1 cut(s) 476
BsuRI GGCC 4 cut(s) 17, 234, 448, 969
BtgI CCRYGG 2 cut(s) 87, 142
BtsCI GGATG 3 cut(s) 121, 228, 331
BtsI GCAGTG 2 cut(s) 254, 279
BtsIMutI CAGTG 2 cut(s) 254, 279
Cac8I GCNNGC 5 cut(s) 40, 70, 149, 188, 744
CfoI GCGC 1 cut(s) 74
Cfr10I RCCGGY 1 cut(s) 68
Cfr13I GGNCC 2 cut(s) 16, 139
Cfr9I CCCGGG 1 cut(s) 644
Csp6I GTAC 1 cut(s) 1062
CviAII CATG 6 cut(s) 88, 148, 320, 472, 560, 604
CviQI GTAC 1 cut(s) 1062
DdeI CTNAG 2 cut(s) 501, 981
DinI GGCGCC 1 cut(s) 73
DpnI GATC 2 cut(s) 478, 533
DpnII GATC 2 cut(s) 476, 531
EaeI YGGCCR 1 cut(s) 967
Eco130I CCWWGG 1 cut(s) 87
Eco147I AGGCCT 1 cut(s) 448
Eco31I GGTCTC 1 cut(s) 942
Eco47I GGWCC 1 cut(s) 139
Eco88I CYCGRG 1 cut(s) 644
EcoRII CCWGG 4 cut(s) 33, 448, 722, 817
EcoT14I CCWWGG 1 cut(s) 87
EgeI GGCGCC 1 cut(s) 73
EheI GGCGCC 1 cut(s) 73
ErhI CCWWGG 1 cut(s) 87
FaeI CATG 6 cut(s) 91, 151, 323, 475, 563, 607
FalI AAGNNNNNCTT 2 cut(s) 797, 829
FatI CATG 6 cut(s) 87, 147, 319, 471, 559, 603
FblI GTMKAC 1 cut(s) 307
Fnu4HI GCNGC 6 cut(s) 15, 93, 363, 366, 381, 1031
FokI GGATG 3 cut(s) 128, 235, 338
Fsp4HI GCNGC 6 cut(s) 15, 93, 363, 366, 381, 1031
FspBI CTAG 1 cut(s) 747
GlaI GCGC 1 cut(s) 73
GluI GCNGC 6 cut(s) 15, 93, 363, 366, 381, 1031
GsaI CCCAGC 2 cut(s) 378, 552
GsuI CTGGAG 1 cut(s) 296
HaeII RGCGCY 1 cut(s) 75
HaeIII GGCC 4 cut(s) 17, 234, 448, 969
HapII CCGG 3 cut(s) 69, 369, 645
HhaI GCGC 1 cut(s) 74
Hin1I GRCGYC 2 cut(s) 6, 72
Hin1II CATG 6 cut(s) 91, 151, 323, 475, 563, 607
Hin6I GCGC 1 cut(s) 72
HinP1I GCGC 1 cut(s) 72
HpaII CCGG 3 cut(s) 69, 369, 645
HphI GGTGA 2 cut(s) 231, 359
Hpy166II GTNNAC 2 cut(s) 142, 308
Hpy188I TCNGA 4 cut(s) 28, 264, 803, 964
Hpy188III TCNNGA 7 cut(s) 124, 181, 313, 707, 731, 929, 945
Hpy8I GTNNAC 2 cut(s) 142, 308
Hpy99I CGWCG 1 cut(s) 11
HpyAV CCTTC 6 cut(s) 500, 549, 787, 803, 873, 909
HpyCH4III ACNGT 2 cut(s) 286, 628
HpyCH4IV ACGT 2 cut(s) 98, 718
HpyCH4V TGCA 5 cut(s) 190, 254, 430, 566, 770
HpyF10VI GCNNNNNNNGC 4 cut(s) 371, 380, 386, 733
HpyF3I CTNAG 2 cut(s) 501, 981
HpySE526I ACGT 2 cut(s) 98, 718
Hsp92I GRCGYC 2 cut(s) 6, 72
Hsp92II CATG 6 cut(s) 91, 151, 323, 475, 563, 607
HspAI GCGC 1 cut(s) 72
KasI GGCGCC 1 cut(s) 71
KroI GCCGGC 1 cut(s) 68
KroNI GCCGGC 1 cut(s) 70
Kzo9I GATC 2 cut(s) 476, 531
LmnI GCTCC 1 cut(s) 937
Lsp1109I GCAGC 3 cut(s) 349, 352, 367
MaeI CTAG 1 cut(s) 747
MaeII ACGT 2 cut(s) 98, 718
MaeIII GTNAC 2 cut(s) 178, 887
MalI GATC 2 cut(s) 478, 533
MboI GATC 2 cut(s) 476, 531
MboII GAAGA 1 cut(s) 917
MfeI CAATTG 1 cut(s) 342
MflI RGATCY 1 cut(s) 476
MhlI GDGCHC 1 cut(s) 942
MlsI TGGCCA 1 cut(s) 969
MluCI AATT 6 cut(s) 246, 265, 342, 567, 844, 1065
MluNI TGGCCA 1 cut(s) 969
Mly113I GGCGCC 1 cut(s) 72
MmeI TCCRAC 1 cut(s) 1054
Mox20I TGGCCA 1 cut(s) 969
MroNI GCCGGC 1 cut(s) 68
MroXI GAANNNNTTC 2 cut(s) 797, 813
MscI TGGCCA 1 cut(s) 969
MseI TTAA 5 cut(s) 200, 417, 638, 789, 848
MslI CAYNNNNRTG 1 cut(s) 324
Msp20I TGGCCA 1 cut(s) 969
MspI CCGG 3 cut(s) 69, 369, 645
MspR9I CCNGG 7 cut(s) 35, 370, 450, 645, 646, 724, 819
MunI CAATTG 1 cut(s) 342
MvaI CCWGG 4 cut(s) 35, 450, 724, 819
MwoI GCNNNNNNNGC 4 cut(s) 371, 380, 386, 733
NaeI GCCGGC 1 cut(s) 70
NarI GGCGCC 1 cut(s) 72
NciI CCSGG 3 cut(s) 370, 645, 646
NcoI CCATGG 1 cut(s) 87
NdeII GATC 2 cut(s) 476, 531
NgoMIV GCCGGC 1 cut(s) 68
NlaIII CATG 6 cut(s) 91, 151, 323, 475, 563, 607
NlaIV GGNNCC 3 cut(s) 73, 85, 459
NmuCI GTSAC 1 cut(s) 178
NspI RCATGY 1 cut(s) 151
PaeI GCATGC 1 cut(s) 151
PceI AGGCCT 1 cut(s) 448
PdiI GCCGGC 1 cut(s) 70
PdmI GAANNNNTTC 2 cut(s) 797, 813
PkrI GCNGC 6 cut(s) 16, 94, 364, 367, 382, 1032
PluTI GGCGCC 1 cut(s) 75
Psp6I CCWGG 4 cut(s) 33, 448, 722, 817
PspFI CCCAGC 2 cut(s) 374, 548
PspGI CCWGG 4 cut(s) 33, 448, 722, 817
PspN4I GGNNCC 3 cut(s) 73, 85, 459
PspPI GGNCC 2 cut(s) 16, 139
PstI CTGCAG 1 cut(s) 192
PsuI RGATCY 1 cut(s) 476
RsaI GTAC 1 cut(s) 1063
RsaNI GTAC 1 cut(s) 1062
RseI CAYNNNNRTG 1 cut(s) 324
SaqAI TTAA 5 cut(s) 200, 417, 638, 789, 848
SatI GCNGC 6 cut(s) 15, 93, 363, 366, 381, 1031
Sau3AI GATC 2 cut(s) 476, 531
Sau96I GGNCC 2 cut(s) 16, 139
ScrFI CCNGG 7 cut(s) 35, 370, 450, 645, 646, 724, 819
SduI GDGCHC 1 cut(s) 942
SfcI CTRYAG 1 cut(s) 188
SfoI GGCGCC 1 cut(s) 73
SinI GGWCC 1 cut(s) 139
SmaI CCCGGG 1 cut(s) 646
SmiMI CAYNNNNRTG 1 cut(s) 324
SphI GCATGC 1 cut(s) 151
Sse9I AATT 6 cut(s) 246, 265, 342, 567, 844, 1065
SseBI AGGCCT 1 cut(s) 448
SsiI CCGC 3 cut(s) 14, 92, 1030
SspDI GGCGCC 1 cut(s) 71
SspI AATATT 1 cut(s) 681
SspMI CTAG 1 cut(s) 747
StuI AGGCCT 1 cut(s) 448
StyD4I CCNGG 7 cut(s) 33, 368, 448, 643, 644, 722, 817
StyI CCWWGG 1 cut(s) 87
TaaI ACNGT 2 cut(s) 286, 628
TaiI ACGT 2 cut(s) 101, 721
TaqI TCGA 1 cut(s) 9
TasI AATT 6 cut(s) 246, 265, 342, 567, 844, 1065
TauI GCSGC 3 cut(s) 17, 95, 1033
Tru1I TTAA 5 cut(s) 200, 417, 638, 789, 848
Tru9I TTAA 5 cut(s) 200, 417, 638, 789, 848
TscAI CASTG 2 cut(s) 261, 279
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 3 cut(s) 362, 365, 380
Tsp45I GTSAC 1 cut(s) 178
TspDTI ATGAA 3 cut(s) 306, 592, 600
TspMI CCCGGG 1 cut(s) 644
TspRI CASTG 2 cut(s) 261, 279
VpaK11BI GGWCC 1 cut(s) 139
XapI RAATTY 1 cut(s) 844
XceI RCATGY 1 cut(s) 151
XmaI CCCGGG 1 cut(s) 644
XmiI GTMKAC 1 cut(s) 307
XmnI GAANNNNTTC 2 cut(s) 797, 813
XspI CTAG 1 cut(s) 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.