Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0001488

Physical Location & Seq

Genomic Coordinates Reverse (-)

5839164 .. 5845441

Gene Structure 6278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g05810.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGCGATTGCAGCTGCAGCTGTCATCGTTCCACTCGGCCTGCTCTTCTTTGTATCAGGCCTCGTAGTCAATCTCATTCAGGGGATTTGCTTCATTCTTGTTCGGCCGCTGTCTAAGAATACATACAGAAGGATCAACAGAGTGGTGGCAGAATTGTTGTGGCTCGAACTCGTTTGGCTCATTGATTGGTGGGCGGGTGTCAAGATCCAAGTGTACACAGACCCTGAAACCTTTCGTTTAATGGGTAAAGAACATGCACTTGTCATATGCAATCATAGAAGTGATATTGATTGGCTTGTTGGATGGGTCCTGGCTCAGCGGTCAGGTTGCCTTGGCAGCACCTTAGCTGTAATGAAGAAATCATCAAAGTTCCTTCCGGTCATAGGGTGGTCAATGTGGTTTTCTGAGTATCTCTTTTTGGAAAGAAGCTGGGCCAAAGATGAAAACACTTTAAAGTTGGGTCTTCAACGGTTGAAGGACTACCCTCAGCCCTTTTGGTTGGCTTTGTTTGTAGAAGGAACTCGTTTTACACAGGCCAAGCTTTTAGCAGCACAAGAATATGCAGCCTCAACAGGGTTGCCTGTTCCTAGAAATGTTTTGATTCCTCGTACTAAGGGTTTTGTCTCTGCAGTAAGTCACATGCGCTCATTTGTTCCAGCCATCTATGATGTAACAGTGGCTATTCCTAAAGCTTCACCTTCACCAACAATGTTAAGACTCTTTGAGGGGCGACCTTCTGTGGTGCATGTGCACATTAAGCGGCATTTAATTAAGGAATTGCCTGAAACTGATGAAGCTGTTGCCCAGTGGTGTAAAGATATCTTTGTGGCAAAGGATGCATTGTTGGATAAACATACAGCAGAGCAAACTTTTGGCGATCAAATATTGCAACCTACTGGTCAACCACGAAAGTCTCTTTTGGTTGTTGCGTCTTGGACATGTCTACTTATTTTGGGGGCTCTAAAGTTCCTCCACTGGTCTTCACTTCTATCCTCATGGAAGGGTATTGGATTCTCAACATTGGGTTTGAGCATTGTTACCGTCCTTATGCAGTTCTTGATTCGGTTTTCTCAGTCAGAGCATTCAACCCCTGCCCGAGTGGCTCCAGCCAAGGACAATAGCAAAGGAGAGTCTTCAAGCAACCTAGACAAACAGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003841 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008374 GO:0012505 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0042171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071617

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04072 map00561 map00564 map01100 map01110 map04072

Pfam Domains

Protein Families

Acyltransf_C Acyltransferase

Protein Analysis

387

Amino Acids

43.32

Weight (kDa)

9.51

Isoelectric Point (pI)

39.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57650
fragaria_vesca	FvH4_6g23240 FvH4_6g23240 FvH4_6g23240 FvH4_6g36950 FvH4_6g36960 FvH4_6g36962
malus_domestica	MD12G1066700.v1.1 MD14G1067300.v1.1
prunus_persica	Prupe.7G067600_v2.0.a1
pyrus_communis	pycom12g05810 pycom14g05530
rosa_chinensis	RchiOBHm_Chr2g0149391 RchiOBHm_Chr2g0149421 RchiOBHm_Chr2g0149441 RchiOBHm_Chr2g0149461 RchiOBHm_Chr2g0149471 RchiOBHm_Chr3g0481071
rosa_laevigata	RLG00000020324 RLG00000020404 RLG00000020406 RLG00000020407 RLG00000023423
rosa_multiflora	Rmu_co8437371.1_g000001 Rmu_sc0000873.1_g000022 Rmu_sc0000873.1_g000026 Rmu_sc0000873.1_g000027 Rmu_sc0000873.1_g000029 Rmu_sc0001551.1_g000024 Rmu_sc0002187.1_g000054
rosa_roxburghii	Rroxscaffold_2G00098120 Rroxscaffold_2G00098130 Rroxscaffold_6G00400660
rosa_rugosa	Rorug03G0190000 Rorug03G0190100 Rorug04G0357400 Rorug04G0357500 Rorug04G0357600
rosa_samantha	Rh3AG240300 Rh3BG276000 Rh3CG271300 Rh3DG267300 Rh5BG363100
rosa_wichuraiana	Rw2G038400 Rw2G038410 Rw2G038420 Rw2G038430 Rw2G038440 Rw2G038450 Rw3G021460 Rw6G011250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	943
AciI	CCGC	4 cut(s)	107, 194, 319, 760
AclWI	GGATC	2 cut(s)	140, 199
AcoI	YGGCCR	1 cut(s)	104
AfaI	GTAC	2 cut(s)	215, 610
AfiI	CCNNNNNNNGG	2 cut(s)	383, 573
AflIII	ACRYGT	1 cut(s)	938
AgsI	TTSAA	4 cut(s)	467, 475, 1086, 1137
AjnI	CCWGG	1 cut(s)	309
AluBI	AGCT	7 cut(s)	14, 20, 347, 429, 541, 692, 797
AluI	AGCT	7 cut(s)	14, 20, 347, 429, 541, 692, 797
Alw21I	GWGCWC	1 cut(s)	753
Alw26I	GTCTC	2 cut(s)	628, 918
Alw44I	GTGCAC	1 cut(s)	749
AlwI	GGATC	2 cut(s)	140, 199
AlwNI	CAGNNNCTG	1 cut(s)	224
Ama87I	CYCGRG	1 cut(s)	1095
AoxI	GGCC	5 cut(s)	37, 58, 104, 432, 534
ApaLI	GTGCAC	1 cut(s)	749
ApeKI	GCWGC	6 cut(s)	11, 14, 17, 336, 548, 563
Asp700I	GAANNNNTTC	1 cut(s)	231
AspLEI	GCGC	1 cut(s)	645
AspS9I	GGNCC	2 cut(s)	307, 432
AsuHPI	GGTGA	2 cut(s)	687, 693
AvaI	CYCGRG	1 cut(s)	1095
AvaII	GGWCC	1 cut(s)	307
BaeGI	GKGCMC	1 cut(s)	753
BanII	GRGCYC	1 cut(s)	961
BbsI	GAAGAC	3 cut(s)	455, 972, 1125
Bbv12I	GWGCWC	1 cut(s)	753
BbvCI	CCTCAGC	1 cut(s)	486
BbvI	GCAGC	5 cut(s)	23, 29, 348, 560, 575
BccI	CCATC	2 cut(s)	297, 668
BciT130I	CCWGG	1 cut(s)	311
BcoDI	GTCTC	2 cut(s)	628, 918
BfaI	CTAG	2 cut(s)	588, 1145
BfmI	CTRYAG	2 cut(s)	15, 627
BglI	GCCNNNNNGGC	1 cut(s)	1100
BisI	GCNGC	8 cut(s)	12, 15, 18, 107, 337, 549, 564, 761
BlpI	GCTNAGC	1 cut(s)	315
BlsI	GCNGC	8 cut(s)	13, 16, 19, 108, 338, 550, 565, 762
Bme1390I	CCNGG	1 cut(s)	311
Bme18I	GGWCC	1 cut(s)	307
BmeT110I	CYCGRG	1 cut(s)	1095
BmgT120I	GGNCC	2 cut(s)	307, 432
BmiI	GGNNCC	2 cut(s)	308, 1104
BmrFI	CCNGG	1 cut(s)	311
BmrI	ACTGGG	1 cut(s)	799
BmsI	GCATC	1 cut(s)	826
BmuI	ACTGGG	1 cut(s)	799
BpiI	GAAGAC	3 cut(s)	455, 972, 1125
BpmI	CTGGAG	1 cut(s)	1089
Bpu10I	CCTNAGC	2 cut(s)	343, 486
Bpu1102I	GCTNAGC	1 cut(s)	315
BsaJI	CCNNGG	2 cut(s)	331, 1110
BsaWI	WCCGGW	1 cut(s)	376
Bsc4I	CCNNNNNNNGG	2 cut(s)	383, 573
Bse1I	ACTGG	3 cut(s)	805, 901, 980
BseBI	CCWGG	1 cut(s)	311
BseDI	CCNNGG	2 cut(s)	331, 1110
BseGI	GGATG	2 cut(s)	308, 841
BseLI	CCNNNNNNNGG	2 cut(s)	383, 573
BseMII	CTCAG	4 cut(s)	329, 396, 500, 1085
BseNI	ACTGG	3 cut(s)	805, 901, 980
BseSI	GKGCMC	1 cut(s)	753
BseX3I	CGGCCG	1 cut(s)	104
BseXI	GCAGC	5 cut(s)	23, 29, 348, 560, 575
BseYI	CCCAGC	1 cut(s)	429
Bsh1285I	CGRYCG	1 cut(s)	107
BshFI	GGCC	5 cut(s)	39, 60, 106, 434, 536
BsiEI	CGRYCG	1 cut(s)	107
BsiHKAI	GWGCWC	1 cut(s)	753
BsiHKCI	CYCGRG	1 cut(s)	1095
BsiSI	CCGG	1 cut(s)	377
BslI	CCNNNNNNNGG	2 cut(s)	383, 573
BsmAI	GTCTC	2 cut(s)	628, 918
BsmI	GAATGC	1 cut(s)	1081
BsnI	GGCC	5 cut(s)	39, 60, 106, 434, 536
BsoBI	CYCGRG	1 cut(s)	1095
Bsp1286I	GDGCHC	2 cut(s)	753, 961
Bsp1407I	TGTACA	1 cut(s)	213
Bsp143I	GATC	3 cut(s)	132, 204, 877
Bsp1720I	GCTNAGC	1 cut(s)	315
BspACI	CCGC	4 cut(s)	107, 194, 319, 760
BspANI	GGCC	5 cut(s)	39, 60, 106, 434, 536
BspCNI	CTCAG	4 cut(s)	328, 397, 499, 1084
BspLI	GGNNCC	2 cut(s)	308, 1104
BspMAI	CTGCAG	2 cut(s)	19, 631
BspPI	GGATC	2 cut(s)	140, 199
BspQI	GCTCTTC	1 cut(s)	50
BsrGI	TGTACA	1 cut(s)	213
BsrI	ACTGG	3 cut(s)	805, 901, 980
BssECI	CCNNGG	2 cut(s)	331, 1110
BssMI	GATC	3 cut(s)	132, 204, 877
BssT1I	CCWWGG	2 cut(s)	331, 1110
Bst2UI	CCWGG	1 cut(s)	311
Bst4CI	ACNGT	3 cut(s)	471, 676, 1042
Bst6I	CTCTTC	1 cut(s)	50
BstAPI	GCANNNNNTGC	1 cut(s)	836
BstAUI	TGTACA	1 cut(s)	213
BstC8I	GCNNGC	1 cut(s)	41
BstDEI	CTNAG	7 cut(s)	114, 315, 343, 405, 486, 612, 1071
BstF5I	GGATG	2 cut(s)	308, 841
BstHHI	GCGC	1 cut(s)	645
BstKTI	GATC	3 cut(s)	135, 207, 880
BstMAI	GTCTC	2 cut(s)	628, 918
BstMBI	GATC	3 cut(s)	132, 204, 877
BstMCI	CGRYCG	1 cut(s)	107
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 17, 336, 757, 836, 1100
BstNI	CCWGG	1 cut(s)	311
BstNSI	RCATGY	4 cut(s)	257, 643, 749, 942
BstSCI	CCNGG	1 cut(s)	309
BstSFI	CTRYAG	2 cut(s)	15, 627
BstSLI	GKGCMC	1 cut(s)	753
BstV1I	GCAGC	5 cut(s)	23, 29, 348, 560, 575
BstV2I	GAAGAC	3 cut(s)	455, 972, 1125
BstX2I	RGATCY	1 cut(s)	204
BstYI	RGATCY	1 cut(s)	204
BstZI	CGGCCG	1 cut(s)	104
BsuRI	GGCC	5 cut(s)	39, 60, 106, 434, 536
BtsCI	GGATG	2 cut(s)	308, 841
BtsIMutI	CAGTG	3 cut(s)	681, 812, 973
Cac8I	GCNNGC	1 cut(s)	41
CaiI	CAGNNNCTG	1 cut(s)	224
CfoI	GCGC	1 cut(s)	645
Cfr13I	GGNCC	2 cut(s)	307, 432
CseI	GACGC	1 cut(s)	918
Csp6I	GTAC	2 cut(s)	214, 609
CviAII	CATG	5 cut(s)	254, 640, 746, 939, 996
CviQI	GTAC	2 cut(s)	214, 609
DdeI	CTNAG	7 cut(s)	114, 315, 343, 405, 486, 612, 1071
DpnI	GATC	3 cut(s)	134, 206, 879
DpnII	GATC	3 cut(s)	132, 204, 877
DraI	TTTAAA	1 cut(s)	453
EaeI	YGGCCR	1 cut(s)	104
EagI	CGGCCG	1 cut(s)	104
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
EclXI	CGGCCG	1 cut(s)	104
Eco130I	CCWWGG	2 cut(s)	331, 1110
Eco147I	AGGCCT	1 cut(s)	60
Eco24I	GRGCYC	1 cut(s)	961
Eco32I	GATATC	1 cut(s)	820
Eco47I	GGWCC	1 cut(s)	307
Eco52I	CGGCCG	1 cut(s)	104
Eco88I	CYCGRG	1 cut(s)	1095
EcoO109I	RGGNCCY	1 cut(s)	307
EcoRII	CCWGG	1 cut(s)	309
EcoRV	GATATC	1 cut(s)	820
EcoT14I	CCWWGG	2 cut(s)	331, 1110
EcoT22I	ATGCAT	1 cut(s)	841
EcoT38I	GRGCYC	1 cut(s)	961
ErhI	CCWWGG	2 cut(s)	331, 1110
FaeI	CATG	5 cut(s)	257, 643, 749, 942, 999
FatI	CATG	5 cut(s)	253, 639, 745, 938, 995
FauI	CCCGC	1 cut(s)	187
FauNDI	CATATG	1 cut(s)	266
FblI	GTMKAC	1 cut(s)	943
Fnu4HI	GCNGC	8 cut(s)	12, 15, 18, 107, 337, 549, 564, 761
FokI	GGATG	2 cut(s)	315, 848
FriOI	GRGCYC	1 cut(s)	961
Fsp4HI	GCNGC	8 cut(s)	12, 15, 18, 107, 337, 549, 564, 761
FspBI	CTAG	2 cut(s)	588, 1145
GlaI	GCGC	1 cut(s)	644
GluI	GCNGC	8 cut(s)	12, 15, 18, 107, 337, 549, 564, 761
GsaI	CCCAGC	1 cut(s)	433
GsuI	CTGGAG	1 cut(s)	1089
HaeIII	GGCC	5 cut(s)	39, 60, 106, 434, 536
HapII	CCGG	1 cut(s)	377
HgaI	GACGC	1 cut(s)	918
HhaI	GCGC	1 cut(s)	645
Hin1II	CATG	5 cut(s)	257, 643, 749, 942, 999
Hin6I	GCGC	1 cut(s)	643
HinP1I	GCGC	1 cut(s)	643
HincII	GTYRAC	1 cut(s)	902
HindII	GTYRAC	1 cut(s)	902
HindIII	AAGCTT	2 cut(s)	539, 690
HinfI	GANTC	5 cut(s)	601, 717, 1011, 1060, 1130
HpaII	CCGG	1 cut(s)	377
HphI	GGTGA	2 cut(s)	687, 693
Hpy166II	GTNNAC	5 cut(s)	214, 216, 751, 902, 944
Hpy188I	TCNGA	2 cut(s)	406, 1078
Hpy188III	TCNNGA	2 cut(s)	202, 1057
Hpy8I	GTNNAC	5 cut(s)	214, 216, 751, 902, 944
HpyAV	CCTTC	7 cut(s)	123, 383, 469, 509, 708, 744, 994
HpyCH4III	ACNGT	3 cut(s)	471, 676, 1042
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 17, 336, 757, 836, 1100
HpyF3I	CTNAG	7 cut(s)	114, 315, 343, 405, 486, 612, 1071
Hsp92II	CATG	5 cut(s)	257, 643, 749, 942, 999
HspAI	GCGC	1 cut(s)	643
Kzo9I	GATC	3 cut(s)	132, 204, 877
LguI	GCTCTTC	1 cut(s)	50
LmnI	GCTCC	1 cut(s)	1108
Lsp1109I	GCAGC	5 cut(s)	23, 29, 348, 560, 575
LweI	GCATC	1 cut(s)	826
MaeI	CTAG	2 cut(s)	588, 1145
MaeIII	GTNAC	3 cut(s)	635, 670, 1036
MalI	GATC	3 cut(s)	134, 206, 879
MboI	GATC	3 cut(s)	132, 204, 877
MboII	GAAGA	5 cut(s)	37, 367, 455, 972, 1125
MflI	RGATCY	1 cut(s)	204
MhlI	GDGCHC	2 cut(s)	753, 961
MluCI	AATT	3 cut(s)	152, 768, 776
MlyI	GAGTC	2 cut(s)	711, 1139
MmeI	TCCRAC	2 cut(s)	280, 825
MnlI	CCTC	7 cut(s)	71, 495, 577, 615, 718, 980, 1003
Mph1103I	ATGCAT	1 cut(s)	841
MroXI	GAANNNNTTC	1 cut(s)	231
MseI	TTAA	6 cut(s)	239, 452, 713, 756, 767, 771
MslI	CAYNNNNRTG	1 cut(s)	279
MspA1I	CMGCKG	4 cut(s)	14, 20, 109, 319
MspI	CCGG	1 cut(s)	377
MspR9I	CCNGG	1 cut(s)	311
Mva1269I	GAATGC	1 cut(s)	1081
MvaI	CCWGG	1 cut(s)	311
MwoI	GCNNNNNNNGC	6 cut(s)	11, 17, 336, 757, 836, 1100
NdeI	CATATG	1 cut(s)	266
NdeII	GATC	3 cut(s)	132, 204, 877
NlaIII	CATG	5 cut(s)	257, 643, 749, 942, 999
NlaIV	GGNNCC	2 cut(s)	308, 1104
NmeAIII	GCCGAG	1 cut(s)	15
NmuCI	GTSAC	1 cut(s)	635
NsiI	ATGCAT	1 cut(s)	841
NspI	RCATGY	4 cut(s)	257, 643, 749, 942
PacI	TTAATTAA	1 cut(s)	771
PceI	AGGCCT	1 cut(s)	60
PciI	ACATGT	1 cut(s)	938
PciSI	GCTCTTC	1 cut(s)	50
PctI	GAATGC	1 cut(s)	1081
PdmI	GAANNNNTTC	1 cut(s)	231
PfeI	GAWTC	3 cut(s)	601, 1011, 1060
PkrI	GCNGC	8 cut(s)	13, 16, 19, 108, 338, 550, 565, 762
PleI	GAGTC	2 cut(s)	711, 1138
PpsI	GAGTC	2 cut(s)	711, 1138
PpuMI	RGGWCCY	1 cut(s)	307
PscI	ACATGT	1 cut(s)	938
Psp5II	RGGWCCY	1 cut(s)	307
Psp6I	CCWGG	1 cut(s)	309
PspFI	CCCAGC	1 cut(s)	429
PspGI	CCWGG	1 cut(s)	309
PspN4I	GGNNCC	2 cut(s)	308, 1104
PspPI	GGNCC	2 cut(s)	307, 432
PspPPI	RGGWCCY	1 cut(s)	307
PsrI	GAACNNNNNNTAC	2 cut(s)	511, 543
PstI	CTGCAG	2 cut(s)	19, 631
PstNI	CAGNNNCTG	1 cut(s)	224
PsuI	RGATCY	1 cut(s)	204
PvuII	CAGCTG	2 cut(s)	14, 20
RsaI	GTAC	2 cut(s)	215, 610
RsaNI	GTAC	2 cut(s)	214, 609
RseI	CAYNNNNRTG	1 cut(s)	279
SapI	GCTCTTC	1 cut(s)	50
SaqAI	TTAA	6 cut(s)	239, 452, 713, 756, 767, 771
SatI	GCNGC	8 cut(s)	12, 15, 18, 107, 337, 549, 564, 761
Sau3AI	GATC	3 cut(s)	132, 204, 877
Sau96I	GGNCC	2 cut(s)	307, 432
SchI	GAGTC	2 cut(s)	711, 1139
ScrFI	CCNGG	1 cut(s)	311
SduI	GDGCHC	2 cut(s)	753, 961
SfaNI	GCATC	1 cut(s)	826
SfcI	CTRYAG	2 cut(s)	15, 627
SinI	GGWCC	1 cut(s)	307
SmiMI	CAYNNNNRTG	1 cut(s)	279
Sse9I	AATT	3 cut(s)	152, 768, 776
SseBI	AGGCCT	1 cut(s)	60
SsiI	CCGC	4 cut(s)	107, 194, 319, 760
SspI	AATATT	1 cut(s)	885
SspMI	CTAG	2 cut(s)	588, 1145
StuI	AGGCCT	1 cut(s)	60
StyD4I	CCNGG	1 cut(s)	309
StyI	CCWWGG	2 cut(s)	331, 1110
TaaI	ACNGT	3 cut(s)	471, 676, 1042
TaqI	TCGA	1 cut(s)	165
TasI	AATT	3 cut(s)	152, 768, 776
TatI	WGTACW	1 cut(s)	213
TauI	GCSGC	2 cut(s)	109, 763
TfiI	GAWTC	3 cut(s)	601, 1011, 1060
Tru1I	TTAA	6 cut(s)	239, 452, 713, 756, 767, 771
Tru9I	TTAA	6 cut(s)	239, 452, 713, 756, 767, 771
TscAI	CASTG	3 cut(s)	681, 812, 980
TseFI	GTSAC	1 cut(s)	635
TseI	GCWGC	6 cut(s)	11, 14, 17, 336, 548, 563
Tsp45I	GTSAC	1 cut(s)	635
TspDTI	ATGAA	4 cut(s)	82, 368, 456, 807
TspRI	CASTG	3 cut(s)	681, 812, 980
VneI	GTGCAC	1 cut(s)	749
VpaK11BI	GGWCC	1 cut(s)	307
XceI	RCATGY	4 cut(s)	257, 643, 749, 942
XmiI	GTMKAC	1 cut(s)	943
XmnI	GAANNNNTTC	1 cut(s)	231
XspI	CTAG	2 cut(s)	588, 1145
Zsp2I	ATGCAT	1 cut(s)	841

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.