Rw6G011250

1-acyl-sn-glycerol-3-phosphate acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0001488
Physical Location & Seq
Reverse (-)
19770741 .. 19774807
4067 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G011250.1

Sequence Viewer

Length: 432 bp
ATGGCGATTGCACTTGGAATTCTCTTTGCAGTGGTCGTGGTCCTTTATCCGCTAATCCTTCATCTCATTCTGGTGGTACTGCTCTGCGTCTCAGGCCTCTTTGCCAATCTCGTTCAGACGTTTTGCTTTGTTTTTATCTGGCCGATCTCAAAGAATGCATACACAAGGATAAACGGCGTGGTTAAAGAATTGGATTGGCTGATCCTAGTGTGCGCAGAGCAGGAAACGAGTCATTTAAAGGGTAAAGGACATGAACTTGTCATATCCAATGCTAGGAGTGATGCTGATCATCTTGTTGAACTGGTATTACTGCATGGTTTCTTCATGATTCTTACAGCAGTTATGACTCTCTTGAAGAACACACTTTGTGATGACAATGAAGATGCCAGCAGAAGTTGCATCAACAACAGCCTTTACTTTCGATGTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko00564 ko01100 ko01110 ko04072 map00561 map00564 map01100 map01110 map04072
Pfam Domains
Protein Families
Acyltransf_C Acyltransferase

Protein Analysis

143

Amino Acids

15.98

Weight (kDa)

5.88

Isoelectric Point (pI)

27.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 214
AciI CCGC 1 cut(s) 50
AclWI GGATC 1 cut(s) 196
AcoI YGGCCR 1 cut(s) 140
AcsI RAATTY 1 cut(s) 18
AdeI CACNNNGTG 1 cut(s) 368
AfaI GTAC 1 cut(s) 78
AfiI CCNNNNNNNGG 1 cut(s) 273
AgsI TTSAA 2 cut(s) 299, 355
Alw26I GTCTC 1 cut(s) 94
AlwI GGATC 1 cut(s) 196
AoxI GGCC 2 cut(s) 94, 140
ApoI RAATTY 1 cut(s) 18
AspLEI GCGC 1 cut(s) 215
AspS9I GGNCC 1 cut(s) 40
AvaII GGWCC 1 cut(s) 40
BceAI ACGGC 1 cut(s) 190
BclI TGATCA 1 cut(s) 286
BcoDI GTCTC 1 cut(s) 94
BfaI CTAG 2 cut(s) 206, 273
Bme18I GGWCC 1 cut(s) 40
BmgT120I GGNCC 1 cut(s) 40
BmsI GCATC 3 cut(s) 271, 373, 408
BsaBI GATNNNNATC 1 cut(s) 285
Bsc4I CCNNNNNNNGG 1 cut(s) 273
Bse1I ACTGG 1 cut(s) 306
Bse8I GATNNNNATC 1 cut(s) 285
BseJI GATNNNNATC 1 cut(s) 285
BseLI CCNNNNNNNGG 1 cut(s) 273
BseMII CTCAG 1 cut(s) 105
BseNI ACTGG 1 cut(s) 306
BshFI GGCC 2 cut(s) 96, 142
BslI CCNNNNNNNGG 1 cut(s) 273
BsmAI GTCTC 1 cut(s) 94
BsmBI CGTCTC 1 cut(s) 94
BsmI GAATGC 1 cut(s) 160
BsnI GGCC 2 cut(s) 96, 142
Bsp143I GATC 3 cut(s) 144, 201, 286
BspACI CCGC 1 cut(s) 50
BspANI GGCC 2 cut(s) 96, 142
BspCNI CTCAG 1 cut(s) 104
BspHI TCATGA 1 cut(s) 324
BspPI GGATC 1 cut(s) 196
BsrI ACTGG 1 cut(s) 306
BssMI GATC 3 cut(s) 144, 201, 286
BstAPI GCANNNNNTGC 1 cut(s) 396
BstC8I GCNNGC 1 cut(s) 388
BstDEI CTNAG 1 cut(s) 91
BstHHI GCGC 1 cut(s) 215
BstKTI GATC 3 cut(s) 147, 204, 289
BstMAI GTCTC 1 cut(s) 94
BstMBI GATC 3 cut(s) 144, 201, 286
BstMWI GCNNNNNNNGC 2 cut(s) 93, 396
BsuRI GGCC 2 cut(s) 96, 142
BtsI GCAGTG 1 cut(s) 36
BtsIMutI CAGTG 1 cut(s) 36
Cac8I GCNNGC 1 cut(s) 388
CciI TCATGA 1 cut(s) 324
CfoI GCGC 1 cut(s) 215
Cfr13I GGNCC 1 cut(s) 40
CseI GACGC 1 cut(s) 76
Csp6I GTAC 1 cut(s) 77
CviAII CATG 3 cut(s) 251, 314, 325
CviJI RGCY 4 cut(s) 96, 142, 199, 411
CviKI_1 RGCY 4 cut(s) 96, 142, 199, 411
CviQI GTAC 1 cut(s) 77
DdeI CTNAG 1 cut(s) 91
DpnI GATC 3 cut(s) 146, 203, 288
DpnII GATC 3 cut(s) 144, 201, 286
DraI TTTAAA 1 cut(s) 237
DraIII CACNNNGTG 1 cut(s) 368
EaeI YGGCCR 1 cut(s) 140
Eco147I AGGCCT 1 cut(s) 96
Eco47I GGWCC 1 cut(s) 40
EcoRI GAATTC 1 cut(s) 18
EcoT22I ATGCAT 1 cut(s) 160
Esp3I CGTCTC 1 cut(s) 94
FaeI CATG 3 cut(s) 254, 317, 328
FaiI YATR 8 cut(s) 160, 252, 263, 315, 326, 344, 428, 430
FatI CATG 3 cut(s) 250, 313, 324
FbaI TGATCA 1 cut(s) 286
FspBI CTAG 2 cut(s) 206, 273
FspI TGCGCA 1 cut(s) 214
GlaI GCGC 1 cut(s) 214
HaeIII GGCC 2 cut(s) 96, 142
HgaI GACGC 1 cut(s) 76
HhaI GCGC 1 cut(s) 215
Hin1II CATG 3 cut(s) 254, 317, 328
Hin6I GCGC 1 cut(s) 213
HinP1I GCGC 1 cut(s) 213
HinfI GANTC 3 cut(s) 229, 328, 346
Hpy188I TCNGA 1 cut(s) 117
Hpy188III TCNNGA 2 cut(s) 325, 352
HpyAV CCTTC 1 cut(s) 68
HpyCH4IV ACGT 1 cut(s) 119
HpyCH4V TGCA 5 cut(s) 11, 29, 158, 313, 399
HpyF10VI GCNNNNNNNGC 2 cut(s) 93, 396
HpyF3I CTNAG 1 cut(s) 91
HpySE526I ACGT 1 cut(s) 119
Hsp92II CATG 3 cut(s) 254, 317, 328
HspAI GCGC 1 cut(s) 213
Ksp22I TGATCA 1 cut(s) 286
Kzo9I GATC 3 cut(s) 144, 201, 286
LpnPI CCDG 6 cut(s) 56, 78, 124, 206, 287, 400
LweI GCATC 3 cut(s) 271, 373, 408
MaeI CTAG 2 cut(s) 206, 273
MaeII ACGT 1 cut(s) 119
MalI GATC 3 cut(s) 146, 203, 288
MboI GATC 3 cut(s) 144, 201, 286
MboII GAAGA 3 cut(s) 313, 367, 392
MluCI AATT 2 cut(s) 18, 188
MlyI GAGTC 2 cut(s) 238, 340
MnlI CCTC 1 cut(s) 107
Mph1103I ATGCAT 1 cut(s) 160
MseI TTAA 2 cut(s) 183, 236
MslI CAYNNNNRTG 1 cut(s) 71
Mva1269I GAATGC 1 cut(s) 160
MwoI GCNNNNNNNGC 2 cut(s) 93, 396
NdeII GATC 3 cut(s) 144, 201, 286
NlaIII CATG 3 cut(s) 254, 317, 328
NsbI TGCGCA 1 cut(s) 214
NsiI ATGCAT 1 cut(s) 160
PagI TCATGA 1 cut(s) 324
PceI AGGCCT 1 cut(s) 96
PctI GAATGC 1 cut(s) 160
PfeI GAWTC 1 cut(s) 328
PleI GAGTC 2 cut(s) 237, 340
PpsI GAGTC 2 cut(s) 237, 340
PspPI GGNCC 1 cut(s) 40
PsrI GAACNNNNNNTAC 2 cut(s) 291, 323
RsaI GTAC 1 cut(s) 78
RsaNI GTAC 1 cut(s) 77
RseI CAYNNNNRTG 1 cut(s) 71
SaqAI TTAA 2 cut(s) 183, 236
Sau3AI GATC 3 cut(s) 144, 201, 286
Sau96I GGNCC 1 cut(s) 40
SchI GAGTC 2 cut(s) 238, 340
SetI ASST 1 cut(s) 122
SfaNI GCATC 3 cut(s) 271, 373, 408
SinI GGWCC 1 cut(s) 40
SmiMI CAYNNNNRTG 1 cut(s) 71
Sse9I AATT 2 cut(s) 18, 188
SseBI AGGCCT 1 cut(s) 96
SsiI CCGC 1 cut(s) 50
SspMI CTAG 2 cut(s) 206, 273
StuI AGGCCT 1 cut(s) 96
TaiI ACGT 1 cut(s) 122
TaqI TCGA 1 cut(s) 421
TasI AATT 2 cut(s) 18, 188
TfiI GAWTC 1 cut(s) 328
Tru1I TTAA 2 cut(s) 183, 236
Tru9I TTAA 2 cut(s) 183, 236
TscAI CASTG 1 cut(s) 36
TspDTI ATGAA 4 cut(s) 50, 267, 313, 393
TspRI CASTG 1 cut(s) 36
VpaK11BI GGWCC 1 cut(s) 40
XapI RAATTY 1 cut(s) 18
XspI CTAG 2 cut(s) 206, 273
Zsp2I ATGCAT 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.