Rmu_co8437371.1_g000001

1-acyl-sn-glycerol-3-phosphate acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8437371.1
OG0001488
Physical Location & Seq
Forward (+)
1 .. 733
733 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8437371.1_g000001.1.cds

Sequence Viewer

Length: 381 bp
gtcagagggtggccaatgtggttttctgaatatgttttttcagaaagcagtgcccatgatgcaagaaaacttaagtcagatctaaaggacttccgtcagcccttttggttttctgttgtcctagaaagaactggttttactcagggagagcttctagctgcacagaggcttcctgtcccttgcaaggttttgagtcctgatactaaggatttggtctatgcagtgagacgtgcgtactctgttgttccagccatttatgttataacagtggcttttcctaaaacttcaccttcaactacagttgaaagtgtaattaaagggggactttctgtggtaagcctagcatacttgacattttgcaaagggtgtattagtatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko00564 ko01100 ko01110 ko04072 map00561 map00564 map01100 map01110 map04072
Pfam Domains
Protein Families
Acyltransf_C Acyltransferase

Protein Analysis

126

Amino Acids

14.06

Weight (kDa)

9.27

Isoelectric Point (pI)

37.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 263
AcoI YGGCCR 1 cut(s) 11
AfaI GTAC 1 cut(s) 236
AfiI CCNNNNNNNGG 1 cut(s) 184
AflII CTTAAG 1 cut(s) 71
AgsI TTSAA 2 cut(s) 294, 305
AjiI CACGTC 1 cut(s) 230
AjuI GAANNNNNNNTTGG 2 cut(s) 7, 39
AluBI AGCT 2 cut(s) 151, 158
AluI AGCT 2 cut(s) 151, 158
Alw26I GTCTC 1 cut(s) 220
AoxI GGCC 1 cut(s) 11
ApeKI GCWGC 1 cut(s) 158
AsuHPI GGTGA 1 cut(s) 279
BaeGI GKGCMC 1 cut(s) 55
BalI TGGCCA 1 cut(s) 13
BbvI GCAGC 1 cut(s) 145
BcoDI GTCTC 1 cut(s) 220
BfaI CTAG 3 cut(s) 122, 155, 341
BfmI CTRYAG 1 cut(s) 297
BfrI CTTAAG 1 cut(s) 71
BglII AGATCT 1 cut(s) 79
BisI GCNGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 160
BmgBI CACGTC 1 cut(s) 230
BmsI GCATC 1 cut(s) 49
BoxI GACNNNNGTC 1 cut(s) 93
Bsc4I CCNNNNNNNGG 1 cut(s) 184
Bse1I ACTGG 1 cut(s) 136
BseLI CCNNNNNNNGG 1 cut(s) 184
BseMII CTCAG 1 cut(s) 155
BseNI ACTGG 1 cut(s) 136
BseSI GKGCMC 1 cut(s) 55
BseXI GCAGC 1 cut(s) 145
BsgI GTGCAG 1 cut(s) 144
BshFI GGCC 1 cut(s) 13
BslFI GGGAC 2 cut(s) 161, 336
BslI CCNNNNNNNGG 1 cut(s) 184
BsmAI GTCTC 1 cut(s) 220
BsmBI CGTCTC 1 cut(s) 220
BsmFI GGGAC 2 cut(s) 161, 336
BsnI GGCC 1 cut(s) 13
Bsp1286I GDGCHC 1 cut(s) 55
Bsp143I GATC 1 cut(s) 79
BspANI GGCC 1 cut(s) 13
BspCNI CTCAG 1 cut(s) 154
BspTI CTTAAG 1 cut(s) 71
BsrI ACTGG 1 cut(s) 136
BssMI GATC 1 cut(s) 79
Bst4CI ACNGT 2 cut(s) 268, 301
BstAFI CTTAAG 1 cut(s) 71
BstDEI CTNAG 2 cut(s) 141, 204
BstKTI GATC 1 cut(s) 82
BstMAI GTCTC 1 cut(s) 220
BstMBI GATC 1 cut(s) 79
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstPAI GACNNNNGTC 1 cut(s) 93
BstSFI CTRYAG 1 cut(s) 297
BstSLI GKGCMC 1 cut(s) 55
BstV1I GCAGC 1 cut(s) 145
BstX2I RGATCY 1 cut(s) 79
BstYI RGATCY 1 cut(s) 79
BsuRI GGCC 1 cut(s) 13
BtrI CACGTC 1 cut(s) 230
BtsI GCAGTG 2 cut(s) 55, 228
BtsIMutI CAGTG 3 cut(s) 55, 228, 273
Csp6I GTAC 1 cut(s) 235
CviAII CATG 1 cut(s) 56
CviJI RGCY 8 cut(s) 13, 100, 151, 158, 169, 251, 272, 339
CviKI_1 RGCY 8 cut(s) 13, 100, 151, 158, 169, 251, 272, 339
CviQI GTAC 1 cut(s) 235
DdeI CTNAG 2 cut(s) 141, 204
DpnI GATC 1 cut(s) 81
DpnII GATC 1 cut(s) 79
EaeI YGGCCR 1 cut(s) 11
Esp3I CGTCTC 1 cut(s) 220
FaeI CATG 1 cut(s) 59
FaiI YATR 6 cut(s) 33, 57, 219, 258, 263, 346
FalI AAGNNNNNCTT 2 cut(s) 309, 341
FaqI GGGAC 2 cut(s) 161, 336
FatI CATG 1 cut(s) 55
Fnu4HI GCNGC 1 cut(s) 159
Fsp4HI GCNGC 1 cut(s) 159
FspBI CTAG 3 cut(s) 122, 155, 341
GluI GCNGC 1 cut(s) 159
HaeIII GGCC 1 cut(s) 13
Hin1II CATG 1 cut(s) 59
HinfI GANTC 1 cut(s) 193
HphI GGTGA 1 cut(s) 279
Hpy188I TCNGA 4 cut(s) 5, 28, 43, 79
Hpy188III TCNNGA 1 cut(s) 197
HpyAV CCTTC 1 cut(s) 300
HpyCH4III ACNGT 2 cut(s) 268, 301
HpyCH4IV ACGT 1 cut(s) 229
HpyCH4V TGCA 5 cut(s) 62, 161, 183, 221, 360
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
HpyF3I CTNAG 2 cut(s) 141, 204
HpySE526I ACGT 1 cut(s) 229
Hsp92II CATG 1 cut(s) 59
Kzo9I GATC 1 cut(s) 79
LpnPI CCDG 5 cut(s) 117, 128, 186, 210, 261
Lsp1109I GCAGC 1 cut(s) 145
LweI GCATC 1 cut(s) 49
MaeI CTAG 3 cut(s) 122, 155, 341
MaeII ACGT 1 cut(s) 229
MalI GATC 1 cut(s) 81
MboI GATC 1 cut(s) 79
MflI RGATCY 1 cut(s) 79
MhlI GDGCHC 1 cut(s) 55
MlsI TGGCCA 1 cut(s) 13
MluCI AATT 1 cut(s) 312
MluNI TGGCCA 1 cut(s) 13
MlyI GAGTC 1 cut(s) 202
MnlI CCTC 1 cut(s) 159
Mox20I TGGCCA 1 cut(s) 13
MscI TGGCCA 1 cut(s) 13
MseI TTAA 2 cut(s) 72, 315
Msp20I TGGCCA 1 cut(s) 13
MspCI CTTAAG 1 cut(s) 71
MwoI GCNNNNNNNGC 1 cut(s) 59
NdeII GATC 1 cut(s) 79
NlaIII CATG 1 cut(s) 59
PkrI GCNGC 1 cut(s) 160
PleI GAGTC 1 cut(s) 201
PpsI GAGTC 1 cut(s) 201
PshAI GACNNNNGTC 1 cut(s) 93
PsiI TTATAA 1 cut(s) 263
PsrI GAACNNNNNNTAC 2 cut(s) 121, 153
PsuI RGATCY 1 cut(s) 79
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
SaqAI TTAA 2 cut(s) 72, 315
SatI GCNGC 1 cut(s) 159
Sau3AI GATC 1 cut(s) 79
SchI GAGTC 1 cut(s) 202
SduI GDGCHC 1 cut(s) 55
SetI ASST 5 cut(s) 153, 160, 189, 232, 292
SfaNI GCATC 1 cut(s) 49
SfcI CTRYAG 1 cut(s) 297
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
Sse9I AATT 1 cut(s) 312
SspMI CTAG 3 cut(s) 122, 155, 341
TaaI ACNGT 2 cut(s) 268, 301
TaiI ACGT 1 cut(s) 232
TasI AATT 1 cut(s) 312
Tru1I TTAA 2 cut(s) 72, 315
Tru9I TTAA 2 cut(s) 72, 315
TscAI CASTG 3 cut(s) 55, 228, 273
TseI GCWGC 1 cut(s) 158
TspGWI ACGGA 1 cut(s) 83
TspRI CASTG 3 cut(s) 55, 228, 273
Vha464I CTTAAG 1 cut(s) 71
XspI CTAG 3 cut(s) 122, 155, 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.