RLG00000020407

1-acyl-sn-glycerol-3-phosphate acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001488
Physical Location & Seq
Forward (+)
64699429 .. 64704816
5388 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020407

Sequence Viewer

Length: 1134 bp
ATGGTTTTGCCCATGGCGATTGCACTTGGAATTCTCTTTGCAGTGGTCGTGGTCCTTTATCCGCTAATCCTTCATCTCATTCCGGTGGTGCTGCTCTGCGTCTCAGGCCTCTTTGCCAATCTGGTTCAGGCGTTTTGCTTTGTTTTTATCTGGCCGATCTCAAAGAATGCATACACAAGGATAAAGGGCGTGGTTAAAGAATTGGATTGGCTGGTTCTGCTAGGCCTCATTGATTGGTGTGCCGGCGTTAAGATCCTAGAGTGCGTAGAACAGGAAACCAGTCATTTAAAGGGTGAAGAGCATGAACTTGTCATATCCAGTGCTAGAAATGATGCCGATCCTCTTCTTGAATTGGTTCTCACTCAGTGGTCAGGTTGCCTTGGCAGTTTATTAGCTGTAATAAAGACATCAGCAAGATACATTCTGGTCAGAGGGTGGCCAATGTGGTTTTCTGAATATGTTTTTTCAGAAAGAAGTGCTCATGATGCAAGAAAACTTAAGTCAGATCTAAAGGACTTCCCTCAGCCCTTTTGGTTTTCTGTTGTCCTAGAAAGAACTGGTTTTACTCAGGGAGAGCTTCTAGCTGCACAGAGGCTTCCTGTCCCTAGCAAGGTTTTGAGTCCTGATACTAAGGATTTGGTCTATGCAGTAAGACGTGCGTACTCTGTTGTTCCAGCCATTTATGTTATAACAGTGGCTATTCCTAAAACTTCTCCTCCAACTACAGTTGAAAGTGTAATTAAAAGGGGACCTTCTGTGGTGCATGTGTACATTAAAAGGCATGCGACTAAAAAATGGCCTGAAACTGATGATGCTGTTGAAAAGTGGTGCACAGAAATACTTGAAGCCGAGGATGCATTATTGGACGAACATATAGTTATATCTCTGATTGTGTTGTGGGCTCTAAAGTTCAACTTTGTCTGCTGTTCCACACTGCTTGTATTGAGTGCTGCCCTCTTTACTGGTCGGATGCTTACTCTGTTCGGCTGTGGAGTGCTTTCGCTGTTGCAGTGTTTCATGGAAGCCGCTATAGCAAACATTAGTTGGTCAGAGCACCTCAAGCCCATCGTTGGCTGGTTGATTTACACTCTTGGAGAGTTGTGTTTGTTGCTCCCTTGTGATACTGGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko00564 ko01100 ko01110 ko04072 map00561 map00564 map01100 map01110 map04072
Pfam Domains
Protein Families
Acyltransf_C Acyltransferase

Protein Analysis

378

Amino Acids

42.04

Weight (kDa)

6.09

Isoelectric Point (pI)

31.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyltransf_C PF16076 246 - 292 9.3e-09 Acyltransferase C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 689
AciI CCGC 2 cut(s) 62, 1026
AclWI GGATC 2 cut(s) 247, 332
AcoI YGGCCR 2 cut(s) 152, 437
AcsI RAATTY 1 cut(s) 30
AdeI CACNNNGTG 1 cut(s) 366
AfaI GTAC 2 cut(s) 662, 770
AfiI CCNNNNNNNGG 2 cut(s) 610, 1070
AflII CTTAAG 1 cut(s) 497
AgsI TTSAA 5 cut(s) 350, 731, 821, 845, 913
AjiI CACGTC 1 cut(s) 656
AjuI GAANNNNNNNTTGG 2 cut(s) 433, 465
AluBI AGCT 3 cut(s) 395, 577, 584
AluI AGCT 3 cut(s) 395, 577, 584
Alw21I GWGCWC 3 cut(s) 481, 833, 1056
Alw26I GTCTC 1 cut(s) 106
Alw44I GTGCAC 1 cut(s) 829
AlwI GGATC 2 cut(s) 247, 332
AoxI GGCC 5 cut(s) 106, 152, 223, 437, 797
ApaLI GTGCAC 1 cut(s) 829
ApeKI GCWGC 3 cut(s) 91, 584, 950
ApoI RAATTY 1 cut(s) 30
Asp700I GAANNNNTTC 1 cut(s) 354
AspS9I GGNCC 2 cut(s) 52, 749
AsuHPI GGTGA 1 cut(s) 305
AvaII GGWCC 2 cut(s) 52, 749
BaeGI GKGCMC 1 cut(s) 833
BalI TGGCCA 1 cut(s) 439
BanII GRGCYC 1 cut(s) 904
Bbv12I GWGCWC 3 cut(s) 481, 833, 1056
BbvCI CCTCAGC 1 cut(s) 522
BbvI GCAGC 3 cut(s) 78, 571, 937
BccI CCATC 1 cut(s) 1073
BcoDI GTCTC 1 cut(s) 106
BfaI CTAG 6 cut(s) 221, 257, 324, 548, 581, 606
BfmI CTRYAG 2 cut(s) 723, 1029
BfrI CTTAAG 1 cut(s) 497
BglII AGATCT 1 cut(s) 505
BisI GCNGC 4 cut(s) 92, 585, 951, 1026
BlsI GCNGC 4 cut(s) 93, 586, 952, 1027
Bme18I GGWCC 2 cut(s) 52, 749
BmgBI CACGTC 1 cut(s) 656
BmgT120I GGNCC 2 cut(s) 52, 749
BmiI GGNNCC 1 cut(s) 750
BmsI GCATC 5 cut(s) 322, 475, 802, 844, 960
Bpu10I CCTNAGC 1 cut(s) 522
BpuEI CTTGAG 1 cut(s) 1043
BsaBI GATNNNNATC 1 cut(s) 336
BsaJI CCNNGG 3 cut(s) 12, 379, 849
BsaWI WCCGGW 1 cut(s) 82
BsaXI ACNNNNNCTCC 2 cut(s) 700, 730
Bsc4I CCNNNNNNNGG 2 cut(s) 610, 1070
Bse118I RCCGGY 1 cut(s) 242
Bse1I ACTGG 5 cut(s) 279, 318, 562, 967, 1129
Bse8I GATNNNNATC 1 cut(s) 336
BseDI CCNNGG 3 cut(s) 12, 379, 849
BseGI GGATG 2 cut(s) 859, 975
BseJI GATNNNNATC 1 cut(s) 336
BseLI CCNNNNNNNGG 2 cut(s) 610, 1070
BseMII CTCAG 4 cut(s) 117, 377, 536, 581
BseNI ACTGG 5 cut(s) 279, 318, 562, 967, 1129
BseRI GAGGAG 1 cut(s) 705
BseSI GKGCMC 1 cut(s) 833
BseXI GCAGC 3 cut(s) 78, 571, 937
BsgI GTGCAG 1 cut(s) 570
BshFI GGCC 5 cut(s) 108, 154, 225, 439, 799
BsiHKAI GWGCWC 3 cut(s) 481, 833, 1056
BsiSI CCGG 2 cut(s) 83, 243
BslFI GGGAC 2 cut(s) 587, 762
BslI CCNNNNNNNGG 2 cut(s) 610, 1070
BsmAI GTCTC 1 cut(s) 106
BsmBI CGTCTC 1 cut(s) 106
BsmFI GGGAC 2 cut(s) 587, 762
BsmI GAATGC 1 cut(s) 172
BsnI GGCC 5 cut(s) 108, 154, 225, 439, 799
Bsp1286I GDGCHC 4 cut(s) 481, 833, 904, 1056
Bsp1407I TGTACA 1 cut(s) 768
Bsp143I GATC 4 cut(s) 156, 252, 337, 505
Bsp19I CCATGG 1 cut(s) 12
BspACI CCGC 2 cut(s) 62, 1026
BspANI GGCC 5 cut(s) 108, 154, 225, 439, 799
BspCNI CTCAG 4 cut(s) 116, 376, 535, 580
BspHI TCATGA 1 cut(s) 481
BspLI GGNNCC 1 cut(s) 750
BspPI GGATC 2 cut(s) 247, 332
BspQI GCTCTTC 1 cut(s) 291
BspTI CTTAAG 1 cut(s) 497
BsrFI RCCGGY 1 cut(s) 242
BsrGI TGTACA 1 cut(s) 768
BsrI ACTGG 5 cut(s) 279, 318, 562, 967, 1129
BssAI RCCGGY 1 cut(s) 242
BssECI CCNNGG 3 cut(s) 12, 379, 849
BssMI GATC 4 cut(s) 156, 252, 337, 505
BssT1I CCWWGG 2 cut(s) 12, 379
Bst4CI ACNGT 2 cut(s) 694, 727
Bst6I CTCTTC 2 cut(s) 291, 348
BstAFI CTTAAG 1 cut(s) 497
BstAUI TGTACA 1 cut(s) 768
BstC8I GCNNGC 2 cut(s) 244, 783
BstDEI CTNAG 5 cut(s) 103, 363, 522, 567, 630
BstDSI CCRYGG 1 cut(s) 12
BstF5I GGATG 2 cut(s) 859, 975
BstKTI GATC 4 cut(s) 159, 255, 340, 508
BstMAI GTCTC 1 cut(s) 106
BstMBI GATC 4 cut(s) 156, 252, 337, 505
BstMWI GCNNNNNNNGC 6 cut(s) 105, 217, 485, 854, 1031, 1060
BstNSI RCATGY 2 cut(s) 767, 785
BstSFI CTRYAG 2 cut(s) 723, 1029
BstSLI GKGCMC 1 cut(s) 833
BstV1I GCAGC 3 cut(s) 78, 571, 937
BstX2I RGATCY 2 cut(s) 252, 505
BstYI RGATCY 2 cut(s) 252, 505
BsuRI GGCC 5 cut(s) 108, 154, 225, 439, 799
BtgI CCRYGG 1 cut(s) 12
BtrI CACGTC 1 cut(s) 656
BtsCI GGATG 2 cut(s) 859, 975
BtsI GCAGTG 3 cut(s) 48, 932, 1016
BtsIMutI CAGTG 6 cut(s) 48, 325, 371, 699, 932, 1016
Cac8I GCNNGC 2 cut(s) 244, 783
CciI TCATGA 1 cut(s) 481
Cfr10I RCCGGY 1 cut(s) 242
Cfr13I GGNCC 2 cut(s) 52, 749
CseI GACGC 1 cut(s) 88
Csp6I GTAC 2 cut(s) 661, 769
CspCI CAANNNNNGTGG 2 cut(s) 919, 954
CviAII CATG 6 cut(s) 13, 302, 482, 764, 782, 1018
CviQI GTAC 2 cut(s) 661, 769
DdeI CTNAG 5 cut(s) 103, 363, 522, 567, 630
DpnI GATC 4 cut(s) 158, 254, 339, 507
DpnII GATC 4 cut(s) 156, 252, 337, 505
DraI TTTAAA 1 cut(s) 288
DraIII CACNNNGTG 1 cut(s) 366
EaeI YGGCCR 2 cut(s) 152, 437
Eam1104I CTCTTC 2 cut(s) 291, 348
EarI CTCTTC 2 cut(s) 291, 348
Eco130I CCWWGG 2 cut(s) 12, 379
Eco147I AGGCCT 2 cut(s) 108, 225
Eco24I GRGCYC 1 cut(s) 904
Eco47I GGWCC 2 cut(s) 52, 749
EcoO109I RGGNCCY 1 cut(s) 749
EcoRI GAATTC 1 cut(s) 30
EcoT14I CCWWGG 2 cut(s) 12, 379
EcoT22I ATGCAT 2 cut(s) 172, 859
EcoT38I GRGCYC 1 cut(s) 904
ErhI CCWWGG 2 cut(s) 12, 379
Esp3I CGTCTC 1 cut(s) 106
FaeI CATG 6 cut(s) 16, 305, 485, 767, 785, 1021
FalI AAGNNNNNCTT 4 cut(s) 736, 768, 899, 931
FaqI GGGAC 2 cut(s) 587, 762
FatI CATG 6 cut(s) 12, 301, 481, 763, 781, 1017
Fnu4HI GCNGC 4 cut(s) 92, 585, 951, 1026
FokI GGATG 2 cut(s) 866, 982
FriOI GRGCYC 1 cut(s) 904
Fsp4HI GCNGC 4 cut(s) 92, 585, 951, 1026
FspBI CTAG 6 cut(s) 221, 257, 324, 548, 581, 606
GluI GCNGC 4 cut(s) 92, 585, 951, 1026
HaeIII GGCC 5 cut(s) 108, 154, 225, 439, 799
HapII CCGG 2 cut(s) 83, 243
HgaI GACGC 1 cut(s) 88
Hin1II CATG 6 cut(s) 16, 305, 485, 767, 785, 1021
HinfI GANTC 1 cut(s) 619
HpaII CCGG 2 cut(s) 83, 243
HphI GGTGA 1 cut(s) 305
Hpy166II GTNNAC 2 cut(s) 769, 831
Hpy188I TCNGA 7 cut(s) 431, 454, 469, 505, 888, 969, 1051
Hpy188III TCNNGA 3 cut(s) 347, 482, 623
Hpy8I GTNNAC 2 cut(s) 769, 831
HpyAV CCTTC 2 cut(s) 80, 762
HpyCH4III ACNGT 2 cut(s) 694, 727
HpyCH4IV ACGT 1 cut(s) 655
HpyF10VI GCNNNNNNNGC 6 cut(s) 105, 217, 485, 854, 1031, 1060
HpyF3I CTNAG 5 cut(s) 103, 363, 522, 567, 630
HpySE526I ACGT 1 cut(s) 655
Hsp92II CATG 6 cut(s) 16, 305, 485, 767, 785, 1021
KroI GCCGGC 1 cut(s) 242
KroNI GCCGGC 1 cut(s) 244
Kzo9I GATC 4 cut(s) 156, 252, 337, 505
LguI GCTCTTC 1 cut(s) 291
LmnI GCTCC 1 cut(s) 1116
Lsp1109I GCAGC 3 cut(s) 78, 571, 937
LweI GCATC 5 cut(s) 322, 475, 802, 844, 960
MaeI CTAG 6 cut(s) 221, 257, 324, 548, 581, 606
MaeII ACGT 1 cut(s) 655
MalI GATC 4 cut(s) 158, 254, 339, 507
MboI GATC 4 cut(s) 156, 252, 337, 505
MboII GAAGA 2 cut(s) 308, 335
MflI RGATCY 2 cut(s) 252, 505
MhlI GDGCHC 4 cut(s) 481, 833, 904, 1056
MlsI TGGCCA 1 cut(s) 439
MluCI AATT 4 cut(s) 30, 200, 350, 738
MluNI TGGCCA 1 cut(s) 439
MlyI GAGTC 1 cut(s) 628
MmeI TCCRAC 2 cut(s) 743, 947
Mox20I TGGCCA 1 cut(s) 439
Mph1103I ATGCAT 2 cut(s) 172, 859
MroNI GCCGGC 1 cut(s) 242
MroXI GAANNNNTTC 1 cut(s) 354
MscI TGGCCA 1 cut(s) 439
MseI TTAA 6 cut(s) 195, 249, 287, 498, 741, 774
MslI CAYNNNNRTG 1 cut(s) 83
Msp20I TGGCCA 1 cut(s) 439
MspCI CTTAAG 1 cut(s) 497
MspI CCGG 2 cut(s) 83, 243
Mva1269I GAATGC 1 cut(s) 172
MwoI GCNNNNNNNGC 6 cut(s) 105, 217, 485, 854, 1031, 1060
NaeI GCCGGC 1 cut(s) 244
NcoI CCATGG 1 cut(s) 12
NdeII GATC 4 cut(s) 156, 252, 337, 505
NgoMIV GCCGGC 1 cut(s) 242
NlaIII CATG 6 cut(s) 16, 305, 485, 767, 785, 1021
NlaIV GGNNCC 1 cut(s) 750
NmeAIII GCCGAG 1 cut(s) 874
NsiI ATGCAT 2 cut(s) 172, 859
NspI RCATGY 2 cut(s) 767, 785
PaeI GCATGC 1 cut(s) 785
PagI TCATGA 1 cut(s) 481
PceI AGGCCT 2 cut(s) 108, 225
PciSI GCTCTTC 1 cut(s) 291
PctI GAATGC 1 cut(s) 172
PdiI GCCGGC 1 cut(s) 244
PdmI GAANNNNTTC 1 cut(s) 354
PkrI GCNGC 4 cut(s) 93, 586, 952, 1027
PleI GAGTC 1 cut(s) 627
PpsI GAGTC 1 cut(s) 627
PpuMI RGGWCCY 1 cut(s) 749
PsiI TTATAA 1 cut(s) 689
Psp5II RGGWCCY 1 cut(s) 749
PspN4I GGNNCC 1 cut(s) 750
PspPI GGNCC 2 cut(s) 52, 749
PspPPI RGGWCCY 1 cut(s) 749
PsrI GAACNNNNNNTAC 2 cut(s) 547, 579
PsuI RGATCY 2 cut(s) 252, 505
RsaI GTAC 2 cut(s) 662, 770
RsaNI GTAC 2 cut(s) 661, 769
RseI CAYNNNNRTG 1 cut(s) 83
SapI GCTCTTC 1 cut(s) 291
SaqAI TTAA 6 cut(s) 195, 249, 287, 498, 741, 774
SatI GCNGC 4 cut(s) 92, 585, 951, 1026
Sau3AI GATC 4 cut(s) 156, 252, 337, 505
Sau96I GGNCC 2 cut(s) 52, 749
SchI GAGTC 1 cut(s) 628
SduI GDGCHC 4 cut(s) 481, 833, 904, 1056
SetI ASST 8 cut(s) 376, 397, 579, 586, 615, 658, 754, 1059
SfaNI GCATC 5 cut(s) 322, 475, 802, 844, 960
SfcI CTRYAG 2 cut(s) 723, 1029
SinI GGWCC 2 cut(s) 52, 749
SmiMI CAYNNNNRTG 1 cut(s) 83
SmlI CTYRAG 2 cut(s) 497, 1058
SmoI CTYRAG 2 cut(s) 497, 1058
SphI GCATGC 1 cut(s) 785
Sse9I AATT 4 cut(s) 30, 200, 350, 738
SseBI AGGCCT 2 cut(s) 108, 225
SsiI CCGC 2 cut(s) 62, 1026
SspMI CTAG 6 cut(s) 221, 257, 324, 548, 581, 606
StuI AGGCCT 2 cut(s) 108, 225
StyI CCWWGG 2 cut(s) 12, 379
TaaI ACNGT 2 cut(s) 694, 727
TaiI ACGT 1 cut(s) 658
TasI AATT 4 cut(s) 30, 200, 350, 738
TatI WGTACW 1 cut(s) 768
TauI GCSGC 1 cut(s) 1028
Tru1I TTAA 6 cut(s) 195, 249, 287, 498, 741, 774
Tru9I TTAA 6 cut(s) 195, 249, 287, 498, 741, 774
TscAI CASTG 6 cut(s) 48, 325, 371, 699, 939, 1016
TseI GCWGC 3 cut(s) 91, 584, 950
TspDTI ATGAA 3 cut(s) 62, 318, 1006
TspRI CASTG 6 cut(s) 48, 325, 371, 699, 939, 1016
Vha464I CTTAAG 1 cut(s) 497
VneI GTGCAC 1 cut(s) 829
VpaK11BI GGWCC 2 cut(s) 52, 749
XapI RAATTY 1 cut(s) 30
XceI RCATGY 2 cut(s) 767, 785
XmnI GAANNNNTTC 1 cut(s) 354
XspI CTAG 6 cut(s) 221, 257, 324, 548, 581, 606
Zsp2I ATGCAT 2 cut(s) 172, 859
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.