Rw2G038450

1-acyl-sn-glycerol-3-phosphate acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0001488
Physical Location & Seq
Forward (+)
63391080 .. 63396293
5214 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G038450.1

Sequence Viewer

Length: 1188 bp
ATGGTTTTGCCCATGGCGATTGCACTTGGAATTCTCTTTGCAGTGGTCGTGGTCCTTTATCCGCTAATCCTTCATCTCATTCCGGTGGTGCTGCTCTGCGTCTCAGGCCTCTTTGCCAATCTGGTTCAGGCGTTTTGCTTTGTTTTTATCTGGCCGATCTCAAAGAATGCATACGCAAGGATAAACGGCGTGGTTAAAGAATTGGATTGGCTGGTTCTTCTAGGCCTCATTGATTGGTGTGCTGGCGTTAAGATCCTAGAGTGCGTAGAGCAGGAAAGCAGTCATTTAAAGGGTGAAGAGCATGAACTTGTCATATCCAGTGCTAGAAATGATACCGATCCTCTTCTTGAATTGGTTCTCGCTCAGTGGTCAGGTTGCCTGGGCAGTTTATTAGCTGTAATAAAGACAACAGCAAGATACATTCTGGTCAGAGGGTGGCCAATGTGGTTTTCTGAATATGTTTTTTCAGAAAGAAGTGCCCATGATGCAAGAAAACTTAAGTCAGATCTAAAGGACTTCCGTCAGCCCTTTTGGTTTTCTGTTGTCCTAGAAAGAACTGGTTTTACTCAGGGAGAGCTTCTAGCTGCACAGAGGCTTCCTGTCCCTTGCAAGGTTTTGAGTCCTGATACTAAGGATTTGGTCTATGCAGTGAGACGTGCGTACTCTGTTGTTCCAGCCATTTATGTTATAACAGTGGCTTTTCCTAAAACTTCACCTTCAACTACAGTTGAAAGTGTAATTAAAGGGGGACTTTCTGTGGTGCATGTGTACATTAAAAGGCATGCGACTAAAAAATGGCCTGAAACTGATGATGCTGTTGAAAAGTGGTGCACAGAAATACTTGAAGCCGAGGATGCATTACTGGACAAACATATAGCAGAACGAACTTTTGGCGTTAAAGGATTGCAAGCTATTGGTCGGCCACTAATGTGTTTCTTGGTTATATCTCTAATTGTGTTGTGGGCTCTAAAGTTCAACTTTGTCGGCTGTTCCACACTGCTTGTATTGAGTGCTGCCCTCTTTACTGGTCGGATGCTTACTCTGTTCAGCTGTGGAGTGCTTTCGCTGTTGCAGTGTTTCATGGAAGCCGCTATAGCAAACATTAGTTGGTCAGAGCACCTCAAGCCCATCTGTGGCTGGTTGATTAATATTCTTGGAGACTTGCTTTTGTTGCTCCCTTTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko00564 ko01100 ko01110 ko04072 map00561 map00564 map01100 map01110 map04072
Pfam Domains
Protein Families
Acyltransf_C Acyltransferase

Protein Analysis

395

Amino Acids

44.02

Weight (kDa)

6.71

Isoelectric Point (pI)

36.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyltransf_C PF16076 247 - 316 2.1e-11 Acyltransferase C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 689
AciI CCGC 2 cut(s) 62, 1089
AclWI GGATC 2 cut(s) 247, 332
AcoI YGGCCR 3 cut(s) 152, 437, 920
AcsI RAATTY 1 cut(s) 30
AfaI GTAC 2 cut(s) 662, 770
AfiI CCNNNNNNNGG 2 cut(s) 610, 1133
AflII CTTAAG 1 cut(s) 497
AgsI TTSAA 6 cut(s) 350, 720, 731, 821, 845, 976
AjiI CACGTC 1 cut(s) 656
AjnI CCWGG 1 cut(s) 378
AjuI GAANNNNNNNTTGG 4 cut(s) 433, 465, 873, 905
AleI CACNNNNGTG 1 cut(s) 928
AluBI AGCT 5 cut(s) 395, 577, 584, 911, 1050
AluI AGCT 5 cut(s) 395, 577, 584, 911, 1050
Alw21I GWGCWC 2 cut(s) 833, 1119
Alw26I GTCTC 3 cut(s) 106, 646, 1152
Alw44I GTGCAC 1 cut(s) 829
AlwI GGATC 2 cut(s) 247, 332
AoxI GGCC 6 cut(s) 106, 152, 223, 437, 797, 920
ApaLI GTGCAC 1 cut(s) 829
ApeKI GCWGC 3 cut(s) 91, 584, 1013
ApoI RAATTY 1 cut(s) 30
AseI ATTAAT 1 cut(s) 1146
Asp700I GAANNNNTTC 1 cut(s) 354
AspS9I GGNCC 1 cut(s) 52
AsuHPI GGTGA 2 cut(s) 305, 705
AvaII GGWCC 1 cut(s) 52
BaeGI GKGCMC 2 cut(s) 481, 833
BalI TGGCCA 1 cut(s) 439
BanII GRGCYC 1 cut(s) 967
Bbv12I GWGCWC 2 cut(s) 833, 1119
BbvI GCAGC 3 cut(s) 78, 571, 1000
BccI CCATC 1 cut(s) 1136
BceAI ACGGC 1 cut(s) 202
BciT130I CCWGG 1 cut(s) 380
BcoDI GTCTC 3 cut(s) 106, 646, 1152
BfaI CTAG 5 cut(s) 221, 257, 324, 548, 581
BfmI CTRYAG 2 cut(s) 723, 1092
BfrI CTTAAG 1 cut(s) 497
BglII AGATCT 1 cut(s) 505
BisI GCNGC 4 cut(s) 92, 585, 1014, 1089
BlsI GCNGC 4 cut(s) 93, 586, 1015, 1090
Bme1390I CCNGG 1 cut(s) 380
Bme18I GGWCC 1 cut(s) 52
BmgBI CACGTC 1 cut(s) 656
BmgT120I GGNCC 1 cut(s) 52
BmrFI CCNGG 1 cut(s) 380
BmsI GCATC 4 cut(s) 475, 802, 844, 1023
BoxI GACNNNNGTC 1 cut(s) 519
BpuEI CTTGAG 1 cut(s) 1106
BsaBI GATNNNNATC 1 cut(s) 336
BsaJI CCNNGG 3 cut(s) 12, 379, 849
BsaWI WCCGGW 1 cut(s) 82
Bsc4I CCNNNNNNNGG 2 cut(s) 610, 1133
Bse1I ACTGG 4 cut(s) 318, 562, 867, 1030
Bse8I GATNNNNATC 1 cut(s) 336
BseBI CCWGG 1 cut(s) 380
BseDI CCNNGG 3 cut(s) 12, 379, 849
BseGI GGATG 2 cut(s) 859, 1038
BseJI GATNNNNATC 1 cut(s) 336
BseLI CCNNNNNNNGG 2 cut(s) 610, 1133
BseMII CTCAG 3 cut(s) 117, 377, 581
BseNI ACTGG 4 cut(s) 318, 562, 867, 1030
BseSI GKGCMC 2 cut(s) 481, 833
BseXI GCAGC 3 cut(s) 78, 571, 1000
BsgI GTGCAG 1 cut(s) 570
BshFI GGCC 6 cut(s) 108, 154, 225, 439, 799, 922
BsiHKAI GWGCWC 2 cut(s) 833, 1119
BsiSI CCGG 1 cut(s) 83
BslFI GGGAC 2 cut(s) 587, 762
BslI CCNNNNNNNGG 2 cut(s) 610, 1133
BsmAI GTCTC 3 cut(s) 106, 646, 1152
BsmBI CGTCTC 2 cut(s) 106, 646
BsmFI GGGAC 2 cut(s) 587, 762
BsmI GAATGC 1 cut(s) 172
BsnI GGCC 6 cut(s) 108, 154, 225, 439, 799, 922
Bsp1286I GDGCHC 4 cut(s) 481, 833, 967, 1119
Bsp1407I TGTACA 1 cut(s) 768
Bsp143I GATC 4 cut(s) 156, 252, 337, 505
Bsp19I CCATGG 1 cut(s) 12
BspACI CCGC 2 cut(s) 62, 1089
BspANI GGCC 6 cut(s) 108, 154, 225, 439, 799, 922
BspCNI CTCAG 3 cut(s) 116, 376, 580
BspPI GGATC 2 cut(s) 247, 332
BspQI GCTCTTC 1 cut(s) 291
BspTI CTTAAG 1 cut(s) 497
BsrGI TGTACA 1 cut(s) 768
BsrI ACTGG 4 cut(s) 318, 562, 867, 1030
BssECI CCNNGG 3 cut(s) 12, 379, 849
BssMI GATC 4 cut(s) 156, 252, 337, 505
BssT1I CCWWGG 1 cut(s) 12
Bst2UI CCWGG 1 cut(s) 380
Bst4CI ACNGT 2 cut(s) 694, 727
Bst6I CTCTTC 2 cut(s) 291, 348
BstAFI CTTAAG 1 cut(s) 497
BstAUI TGTACA 1 cut(s) 768
BstC8I GCNNGC 3 cut(s) 244, 783, 909
BstDEI CTNAG 4 cut(s) 103, 363, 567, 630
BstDSI CCRYGG 1 cut(s) 12
BstF5I GGATG 2 cut(s) 859, 1038
BstKTI GATC 4 cut(s) 159, 255, 340, 508
BstMAI GTCTC 3 cut(s) 106, 646, 1152
BstMBI GATC 4 cut(s) 156, 252, 337, 505
BstMWI GCNNNNNNNGC 6 cut(s) 105, 485, 854, 1094, 1123, 1171
BstNI CCWGG 1 cut(s) 380
BstNSI RCATGY 2 cut(s) 767, 785
BstPAI GACNNNNGTC 1 cut(s) 519
BstSCI CCNGG 1 cut(s) 378
BstSFI CTRYAG 2 cut(s) 723, 1092
BstSLI GKGCMC 2 cut(s) 481, 833
BstV1I GCAGC 3 cut(s) 78, 571, 1000
BstX2I RGATCY 2 cut(s) 252, 505
BstYI RGATCY 2 cut(s) 252, 505
BsuRI GGCC 6 cut(s) 108, 154, 225, 439, 799, 922
BtgI CCRYGG 1 cut(s) 12
BtrI CACGTC 1 cut(s) 656
BtsCI GGATG 2 cut(s) 859, 1038
BtsI GCAGTG 4 cut(s) 48, 654, 995, 1079
BtsIMutI CAGTG 7 cut(s) 48, 325, 371, 654, 699, 995, 1079
Cac8I GCNNGC 3 cut(s) 244, 783, 909
Cfr13I GGNCC 1 cut(s) 52
CseI GACGC 1 cut(s) 88
Csp6I GTAC 2 cut(s) 661, 769
CspCI CAANNNNNGTGG 2 cut(s) 982, 1017
CviAII CATG 6 cut(s) 13, 302, 482, 764, 782, 1081
CviQI GTAC 2 cut(s) 661, 769
DdeI CTNAG 4 cut(s) 103, 363, 567, 630
DpnI GATC 4 cut(s) 158, 254, 339, 507
DpnII GATC 4 cut(s) 156, 252, 337, 505
DraI TTTAAA 1 cut(s) 288
EaeI YGGCCR 3 cut(s) 152, 437, 920
Eam1104I CTCTTC 2 cut(s) 291, 348
EarI CTCTTC 2 cut(s) 291, 348
Eco130I CCWWGG 1 cut(s) 12
Eco147I AGGCCT 2 cut(s) 108, 225
Eco24I GRGCYC 1 cut(s) 967
Eco47I GGWCC 1 cut(s) 52
EcoRI GAATTC 1 cut(s) 30
EcoRII CCWGG 1 cut(s) 378
EcoT14I CCWWGG 1 cut(s) 12
EcoT22I ATGCAT 2 cut(s) 172, 859
EcoT38I GRGCYC 1 cut(s) 967
ErhI CCWWGG 1 cut(s) 12
Esp3I CGTCTC 2 cut(s) 106, 646
FaeI CATG 6 cut(s) 16, 305, 485, 767, 785, 1084
FalI AAGNNNNNCTT 4 cut(s) 735, 767, 962, 994
FaqI GGGAC 2 cut(s) 587, 762
FatI CATG 6 cut(s) 12, 301, 481, 763, 781, 1080
Fnu4HI GCNGC 4 cut(s) 92, 585, 1014, 1089
FokI GGATG 2 cut(s) 866, 1045
FriOI GRGCYC 1 cut(s) 967
Fsp4HI GCNGC 4 cut(s) 92, 585, 1014, 1089
FspBI CTAG 5 cut(s) 221, 257, 324, 548, 581
GluI GCNGC 4 cut(s) 92, 585, 1014, 1089
HaeIII GGCC 6 cut(s) 108, 154, 225, 439, 799, 922
HapII CCGG 1 cut(s) 83
HgaI GACGC 1 cut(s) 88
Hin1II CATG 6 cut(s) 16, 305, 485, 767, 785, 1084
HinfI GANTC 1 cut(s) 619
HpaII CCGG 1 cut(s) 83
HphI GGTGA 2 cut(s) 305, 705
Hpy166II GTNNAC 2 cut(s) 769, 831
Hpy188I TCNGA 6 cut(s) 431, 454, 469, 505, 1032, 1114
Hpy188III TCNNGA 2 cut(s) 347, 623
Hpy8I GTNNAC 2 cut(s) 769, 831
HpyAV CCTTC 2 cut(s) 80, 726
HpyCH4III ACNGT 2 cut(s) 694, 727
HpyCH4IV ACGT 1 cut(s) 655
HpyF10VI GCNNNNNNNGC 6 cut(s) 105, 485, 854, 1094, 1123, 1171
HpyF3I CTNAG 4 cut(s) 103, 363, 567, 630
HpySE526I ACGT 1 cut(s) 655
Hsp92II CATG 6 cut(s) 16, 305, 485, 767, 785, 1084
Kzo9I GATC 4 cut(s) 156, 252, 337, 505
LguI GCTCTTC 1 cut(s) 291
LmnI GCTCC 1 cut(s) 1179
Lsp1109I GCAGC 3 cut(s) 78, 571, 1000
LweI GCATC 4 cut(s) 475, 802, 844, 1023
MaeI CTAG 5 cut(s) 221, 257, 324, 548, 581
MaeII ACGT 1 cut(s) 655
MalI GATC 4 cut(s) 158, 254, 339, 507
MboI GATC 4 cut(s) 156, 252, 337, 505
MboII GAAGA 3 cut(s) 209, 308, 335
MflI RGATCY 2 cut(s) 252, 505
MhlI GDGCHC 4 cut(s) 481, 833, 967, 1119
MlsI TGGCCA 1 cut(s) 439
MluCI AATT 5 cut(s) 30, 200, 350, 738, 951
MluNI TGGCCA 1 cut(s) 439
MlyI GAGTC 1 cut(s) 628
MmeI TCCRAC 1 cut(s) 1010
MnlI CCTC 8 cut(s) 119, 236, 351, 425, 585, 844, 1028, 1130
Mox20I TGGCCA 1 cut(s) 439
Mph1103I ATGCAT 2 cut(s) 172, 859
MroXI GAANNNNTTC 1 cut(s) 354
MscI TGGCCA 1 cut(s) 439
MseI TTAA 9 cut(s) 195, 249, 287, 498, 741, 774, 897, 1146, 1186
MslI CAYNNNNRTG 2 cut(s) 83, 928
Msp20I TGGCCA 1 cut(s) 439
MspA1I CMGCKG 1 cut(s) 1050
MspCI CTTAAG 1 cut(s) 497
MspI CCGG 1 cut(s) 83
MspR9I CCNGG 1 cut(s) 380
Mva1269I GAATGC 1 cut(s) 172
MvaI CCWGG 1 cut(s) 380
MwoI GCNNNNNNNGC 6 cut(s) 105, 485, 854, 1094, 1123, 1171
NcoI CCATGG 1 cut(s) 12
NdeII GATC 4 cut(s) 156, 252, 337, 505
NlaIII CATG 6 cut(s) 16, 305, 485, 767, 785, 1084
NmeAIII GCCGAG 1 cut(s) 874
NsiI ATGCAT 2 cut(s) 172, 859
NspI RCATGY 2 cut(s) 767, 785
OliI CACNNNNGTG 1 cut(s) 928
PaeI GCATGC 1 cut(s) 785
PceI AGGCCT 2 cut(s) 108, 225
PciSI GCTCTTC 1 cut(s) 291
PctI GAATGC 1 cut(s) 172
PdmI GAANNNNTTC 1 cut(s) 354
PkrI GCNGC 4 cut(s) 93, 586, 1015, 1090
PleI GAGTC 1 cut(s) 627
PpsI GAGTC 1 cut(s) 627
PshAI GACNNNNGTC 1 cut(s) 519
PshBI ATTAAT 1 cut(s) 1146
PsiI TTATAA 1 cut(s) 689
Psp6I CCWGG 1 cut(s) 378
PspGI CCWGG 1 cut(s) 378
PspPI GGNCC 1 cut(s) 52
PsrI GAACNNNNNNTAC 2 cut(s) 547, 579
PsuI RGATCY 2 cut(s) 252, 505
PvuII CAGCTG 1 cut(s) 1050
RsaI GTAC 2 cut(s) 662, 770
RsaNI GTAC 2 cut(s) 661, 769
RseI CAYNNNNRTG 2 cut(s) 83, 928
SapI GCTCTTC 1 cut(s) 291
SaqAI TTAA 9 cut(s) 195, 249, 287, 498, 741, 774, 897, 1146, 1186
SatI GCNGC 4 cut(s) 92, 585, 1014, 1089
Sau3AI GATC 4 cut(s) 156, 252, 337, 505
Sau96I GGNCC 1 cut(s) 52
SchI GAGTC 1 cut(s) 628
ScrFI CCNGG 1 cut(s) 380
SduI GDGCHC 4 cut(s) 481, 833, 967, 1119
SfaNI GCATC 4 cut(s) 475, 802, 844, 1023
SfcI CTRYAG 2 cut(s) 723, 1092
SinI GGWCC 1 cut(s) 52
SmiMI CAYNNNNRTG 2 cut(s) 83, 928
SmlI CTYRAG 2 cut(s) 497, 1121
SmoI CTYRAG 2 cut(s) 497, 1121
SphI GCATGC 1 cut(s) 785
Sse9I AATT 5 cut(s) 30, 200, 350, 738, 951
SseBI AGGCCT 2 cut(s) 108, 225
SsiI CCGC 2 cut(s) 62, 1089
SspI AATATT 1 cut(s) 1150
SspMI CTAG 5 cut(s) 221, 257, 324, 548, 581
StuI AGGCCT 2 cut(s) 108, 225
StyD4I CCNGG 1 cut(s) 378
StyI CCWWGG 1 cut(s) 12
TaaI ACNGT 2 cut(s) 694, 727
TaiI ACGT 1 cut(s) 658
TasI AATT 5 cut(s) 30, 200, 350, 738, 951
TatI WGTACW 1 cut(s) 768
TauI GCSGC 1 cut(s) 1091
Tru1I TTAA 9 cut(s) 195, 249, 287, 498, 741, 774, 897, 1146, 1186
Tru9I TTAA 9 cut(s) 195, 249, 287, 498, 741, 774, 897, 1146, 1186
TscAI CASTG 7 cut(s) 48, 325, 371, 654, 699, 1002, 1079
TseI GCWGC 3 cut(s) 91, 584, 1013
TspDTI ATGAA 3 cut(s) 62, 318, 1069
TspGWI ACGGA 1 cut(s) 509
TspRI CASTG 7 cut(s) 48, 325, 371, 654, 699, 1002, 1079
Vha464I CTTAAG 1 cut(s) 497
VneI GTGCAC 1 cut(s) 829
VpaK11BI GGWCC 1 cut(s) 52
VspI ATTAAT 1 cut(s) 1146
XapI RAATTY 1 cut(s) 30
XceI RCATGY 2 cut(s) 767, 785
XmnI GAANNNNTTC 1 cut(s) 354
XspI CTAG 5 cut(s) 221, 257, 324, 548, 581
Zsp2I ATGCAT 2 cut(s) 172, 859
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.