Rw2G038400

1-acyl-sn-glycerol-3-phosphate acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0001488
Physical Location & Seq
Forward (+)
63346319 .. 63351768
5450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G038400.1

Sequence Viewer

Length: 1182 bp
ATGGTTTTGCCCATGGCGATTGCACTCGGAATCCTCTTTTCAGTGGTCGTGGTCCTCCATCCGTTAATCCTTCATCTCATCCCGGTGGTGCTGCTCTGCGTCTCAGGCCTCTTTGCCAATCTGGTTCAGGCGTTTTGCTTTGTTTGTATCTGGCCGATTTCGAAGAACGCGTACGCAAGGATAAACGGCGTGGTTAAAGAATTGGATTGGCGGGTTCTGCTAGGCCTCATTGATTGGTGTGCTGGCGTTAAGATCCTAGAGTGTGTAGAGCTCGAAACCAGCCATTTAAAGGGTGAAGAACATGAACTTGTTATATCCAATGCTAGAAATGGTGCCGATCCTCTTCTTGAACTGGTTCTTGCTCAGTGGTCAGGTTGCCTTGGCAGTTTATTAACTGTAATAAAGACATCAGCAAGATACATACCGGTCATAGGTTGGTCAATGTGGTCTTCTGGATATGTTTTTTCAGGAAGAAGTTGTGACCAAGATGCCAGAAAACTTAAGTCAGATCTAAAAGACTTCCCTCAACCCTTTTGGTTATCTGTTGTGCTAGAAAGAACTGGTTTTACTCAGGGAGAGCTTCTAGCTGCACAGAGGCTTCCTGTCCCTAGCAAGGTTTTGAGTCCTGATACTAAGGATTTGGTCTATGCAGTAAGACGTGCGTACTCTGTTGTTTCAGCCATTTATGTCATAACAGTGTCCATTCCTGAAACTTCACCTCCACCTACACTTGAAAGTGTAATTAAAGGGGGACCTTCTGTGGTGCATGTGTACATCAAGCAGCATGCGACTAAAAAATGTTCTGAAACTGATGATGCTGTTAAAAAGTGGTGCACAGAAATACTTGCAGCGATAGCAGAACAAACTTTTGGCAATAAAGGATTGCAAGCTATTGGTCGGCCACTAAAGTGTTTCTTGGTTGTTATATCTCTAATCGTGTTAGGGTCTCTAAAGTTCAACTTCGTCTGCTGTTCCACACTGCTTGTATTGAGTGCTGCCCTCTTTACTGGCCGGGTGCTTACTCTGTTCGGCTGTGGAGTGCTTTCGCTGTTGCAGTGTTTCATGGAGGCCGCTATAGCAAACATTAGTTGGTCAGAGCACCTCAAGCCCATCTGTGGCTGGTTGATTGATATTCTTGGAGAATTGCTTTCGACGCTTCCCTGTGACAGACCTTGGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko00564 ko01100 ko01110 ko04072 map00561 map00564 map01100 map01110 map04072
Pfam Domains
Protein Families
Acyltransf_C Acyltransferase

Protein Analysis

393

Amino Acids

43.03

Weight (kDa)

7.84

Isoelectric Point (pI)

32.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 332
AccII CGCG 1 cut(s) 170
AciI CCGC 2 cut(s) 211, 1071
AclWI GGATC 2 cut(s) 247, 332
AcoI YGGCCR 3 cut(s) 152, 899, 1009
AfaI GTAC 3 cut(s) 173, 665, 773
AfiI CCNNNNNNNGG 4 cut(s) 289, 431, 613, 1115
AflII CTTAAG 1 cut(s) 500
AflIII ACRYGT 1 cut(s) 168
AgeI ACCGGT 1 cut(s) 424
AgsI TTSAA 3 cut(s) 350, 734, 958
AjiI CACGTC 1 cut(s) 659
AjuI GAANNNNNNNTTGG 2 cut(s) 852, 884
AleI CACNNNNGTG 1 cut(s) 907
AluBI AGCT 4 cut(s) 271, 580, 587, 890
AluI AGCT 4 cut(s) 271, 580, 587, 890
Alw21I GWGCWC 3 cut(s) 273, 836, 1101
Alw26I GTCTC 2 cut(s) 106, 951
Alw44I GTGCAC 1 cut(s) 832
AlwI GGATC 2 cut(s) 247, 332
AoxI GGCC 6 cut(s) 106, 152, 223, 899, 1009, 1068
ApaLI GTGCAC 1 cut(s) 832
ApeKI GCWGC 5 cut(s) 91, 587, 781, 848, 995
AsiGI ACCGGT 1 cut(s) 424
Asp700I GAANNNNTTC 1 cut(s) 354
AspS9I GGNCC 2 cut(s) 52, 752
AsuC2I CCSGG 2 cut(s) 83, 1013
AsuHPI GGTGA 2 cut(s) 305, 708
AsuII TTCGAA 1 cut(s) 161
AvaII GGWCC 2 cut(s) 52, 752
BaeGI GKGCMC 1 cut(s) 836
BanI GGYRCC 1 cut(s) 332
BanII GRGCYC 1 cut(s) 273
BarI GAAGNNNNNNTAC 2 cut(s) 155, 187
BbsI GAAGAC 1 cut(s) 441
Bbv12I GWGCWC 3 cut(s) 273, 836, 1101
BbvI GCAGC 5 cut(s) 78, 574, 793, 860, 982
BccI CCATC 2 cut(s) 66, 1118
BceAI ACGGC 1 cut(s) 202
BcnI CCSGG 2 cut(s) 83, 1013
BcoDI GTCTC 2 cut(s) 106, 951
BfaI CTAG 6 cut(s) 221, 257, 324, 551, 584, 609
BfmI CTRYAG 1 cut(s) 1074
BfrI CTTAAG 1 cut(s) 500
BglII AGATCT 1 cut(s) 508
BisI GCNGC 6 cut(s) 92, 588, 782, 849, 996, 1071
BlsI GCNGC 6 cut(s) 93, 589, 783, 850, 997, 1072
Bme1390I CCNGG 2 cut(s) 83, 1013
Bme18I GGWCC 2 cut(s) 52, 752
BmgBI CACGTC 1 cut(s) 659
BmgT120I GGNCC 2 cut(s) 52, 752
BmiI GGNNCC 2 cut(s) 334, 753
BmrFI CCNGG 2 cut(s) 83, 1013
BmsI GCATC 2 cut(s) 478, 805
BpiI GAAGAC 1 cut(s) 441
Bpu14I TTCGAA 1 cut(s) 161
BpuEI CTTGAG 1 cut(s) 1088
BpuMI CCSGG 2 cut(s) 83, 1013
BsaI GGTCTC 1 cut(s) 951
BsaJI CCNNGG 3 cut(s) 12, 379, 1172
BsaWI WCCGGW 1 cut(s) 424
BsaXI ACNNNNNCTCC 2 cut(s) 703, 733
Bsc4I CCNNNNNNNGG 4 cut(s) 289, 431, 613, 1115
Bse118I RCCGGY 1 cut(s) 424
Bse1I ACTGG 3 cut(s) 357, 565, 1012
BseDI CCNNGG 3 cut(s) 12, 379, 1172
BseGI GGATG 2 cut(s) 58, 78
BseLI CCNNNNNNNGG 4 cut(s) 289, 431, 613, 1115
BseMII CTCAG 3 cut(s) 117, 377, 584
BseNI ACTGG 3 cut(s) 357, 565, 1012
BseSI GKGCMC 1 cut(s) 836
BseXI GCAGC 5 cut(s) 78, 574, 793, 860, 982
BsgI GTGCAG 1 cut(s) 573
Bsh1236I CGCG 1 cut(s) 170
BshFI GGCC 6 cut(s) 108, 154, 225, 901, 1011, 1070
BshNI GGYRCC 1 cut(s) 332
BshTI ACCGGT 1 cut(s) 424
BsiHKAI GWGCWC 3 cut(s) 273, 836, 1101
BsiSI CCGG 3 cut(s) 83, 425, 1012
BsiWI CGTACG 1 cut(s) 171
BslFI GGGAC 2 cut(s) 590, 765
BslI CCNNNNNNNGG 4 cut(s) 289, 431, 613, 1115
BsmAI GTCTC 2 cut(s) 106, 951
BsmBI CGTCTC 1 cut(s) 106
BsmFI GGGAC 2 cut(s) 590, 765
BsnI GGCC 6 cut(s) 108, 154, 225, 901, 1011, 1070
Bso31I GGTCTC 1 cut(s) 951
Bsp119I TTCGAA 1 cut(s) 161
Bsp1286I GDGCHC 3 cut(s) 273, 836, 1101
Bsp1407I TGTACA 1 cut(s) 771
Bsp143I GATC 3 cut(s) 252, 337, 508
Bsp19I CCATGG 1 cut(s) 12
BspACI CCGC 2 cut(s) 211, 1071
BspANI GGCC 6 cut(s) 108, 154, 225, 901, 1011, 1070
BspCNI CTCAG 3 cut(s) 116, 376, 583
BspFNI CGCG 1 cut(s) 170
BspLI GGNNCC 2 cut(s) 334, 753
BspPI GGATC 2 cut(s) 247, 332
BspT104I TTCGAA 1 cut(s) 161
BspT107I GGYRCC 1 cut(s) 332
BspTI CTTAAG 1 cut(s) 500
BspTNI GGTCTC 1 cut(s) 951
BsrFI RCCGGY 1 cut(s) 424
BsrGI TGTACA 1 cut(s) 771
BsrI ACTGG 3 cut(s) 357, 565, 1012
BssAI RCCGGY 1 cut(s) 424
BssECI CCNNGG 3 cut(s) 12, 379, 1172
BssMI GATC 3 cut(s) 252, 337, 508
BssT1I CCWWGG 3 cut(s) 12, 379, 1172
Bst4CI ACNGT 2 cut(s) 397, 697
Bst6I CTCTTC 1 cut(s) 348
BstAFI CTTAAG 1 cut(s) 500
BstAUI TGTACA 1 cut(s) 771
BstBI TTCGAA 1 cut(s) 161
BstC8I GCNNGC 3 cut(s) 244, 786, 888
BstDEI CTNAG 4 cut(s) 103, 363, 570, 633
BstDSI CCRYGG 1 cut(s) 12
BstF5I GGATG 2 cut(s) 58, 78
BstFNI CGCG 1 cut(s) 170
BstKTI GATC 3 cut(s) 255, 340, 511
BstMAI GTCTC 2 cut(s) 106, 951
BstMBI GATC 3 cut(s) 252, 337, 508
BstMWI GCNNNNNNNGC 6 cut(s) 105, 217, 854, 1076, 1105, 1153
BstNSI RCATGY 2 cut(s) 770, 788
BstSCI CCNGG 2 cut(s) 81, 1011
BstSFI CTRYAG 1 cut(s) 1074
BstSLI GKGCMC 1 cut(s) 836
BstUI CGCG 1 cut(s) 170
BstV1I GCAGC 5 cut(s) 78, 574, 793, 860, 982
BstV2I GAAGAC 1 cut(s) 441
BstX2I RGATCY 2 cut(s) 252, 508
BstYI RGATCY 2 cut(s) 252, 508
BsuRI GGCC 6 cut(s) 108, 154, 225, 901, 1011, 1070
BtgI CCRYGG 1 cut(s) 12
BtrI CACGTC 1 cut(s) 659
BtsCI GGATG 2 cut(s) 58, 78
BtsI GCAGTG 2 cut(s) 977, 1061
BtsIMutI CAGTG 5 cut(s) 48, 371, 702, 977, 1061
Cac8I GCNNGC 3 cut(s) 244, 786, 888
Cfr10I RCCGGY 1 cut(s) 424
Cfr13I GGNCC 2 cut(s) 52, 752
CseI GACGC 2 cut(s) 88, 1162
Csp6I GTAC 3 cut(s) 172, 664, 772
CspAI ACCGGT 1 cut(s) 424
CspCI CAANNNNNGTGG 2 cut(s) 964, 999
CviAII CATG 5 cut(s) 13, 302, 767, 785, 1063
CviQI GTAC 3 cut(s) 172, 664, 772
DdeI CTNAG 4 cut(s) 103, 363, 570, 633
DpnI GATC 3 cut(s) 254, 339, 510
DpnII GATC 3 cut(s) 252, 337, 508
DraI TTTAAA 1 cut(s) 288
EaeI YGGCCR 3 cut(s) 152, 899, 1009
Eam1104I CTCTTC 1 cut(s) 348
EarI CTCTTC 1 cut(s) 348
Ecl136II GAGCTC 1 cut(s) 271
Eco130I CCWWGG 3 cut(s) 12, 379, 1172
Eco147I AGGCCT 2 cut(s) 108, 225
Eco24I GRGCYC 1 cut(s) 273
Eco31I GGTCTC 1 cut(s) 951
Eco47I GGWCC 2 cut(s) 52, 752
Eco53kI GAGCTC 1 cut(s) 271
EcoICRI GAGCTC 1 cut(s) 271
EcoO109I RGGNCCY 1 cut(s) 752
EcoT14I CCWWGG 3 cut(s) 12, 379, 1172
EcoT38I GRGCYC 1 cut(s) 273
ErhI CCWWGG 3 cut(s) 12, 379, 1172
Esp3I CGTCTC 1 cut(s) 106
FaeI CATG 5 cut(s) 16, 305, 770, 788, 1066
FalI AAGNNNNNCTT 4 cut(s) 899, 931, 944, 976
FaqI GGGAC 2 cut(s) 590, 765
FatI CATG 5 cut(s) 12, 301, 766, 784, 1062
FauI CCCGC 1 cut(s) 204
Fnu4HI GCNGC 6 cut(s) 92, 588, 782, 849, 996, 1071
FokI GGATG 2 cut(s) 45, 65
FriOI GRGCYC 1 cut(s) 273
Fsp4HI GCNGC 6 cut(s) 92, 588, 782, 849, 996, 1071
FspBI CTAG 6 cut(s) 221, 257, 324, 551, 584, 609
GluI GCNGC 6 cut(s) 92, 588, 782, 849, 996, 1071
HaeIII GGCC 6 cut(s) 108, 154, 225, 901, 1011, 1070
HapII CCGG 3 cut(s) 83, 425, 1012
HgaI GACGC 2 cut(s) 88, 1162
Hin1II CATG 5 cut(s) 16, 305, 770, 788, 1066
HinfI GANTC 2 cut(s) 30, 622
HpaII CCGG 3 cut(s) 83, 425, 1012
HphI GGTGA 2 cut(s) 305, 708
Hpy166II GTNNAC 2 cut(s) 772, 834
Hpy188I TCNGA 4 cut(s) 29, 508, 805, 1096
Hpy188III TCNNGA 5 cut(s) 347, 453, 468, 626, 707
Hpy8I GTNNAC 2 cut(s) 772, 834
Hpy99I CGWCG 1 cut(s) 1156
HpyAV CCTTC 2 cut(s) 80, 765
HpyCH4III ACNGT 2 cut(s) 397, 697
HpyCH4IV ACGT 1 cut(s) 658
HpyCH4V TGCA 8 cut(s) 23, 590, 650, 766, 834, 848, 886, 1054
HpyF10VI GCNNNNNNNGC 6 cut(s) 105, 217, 854, 1076, 1105, 1153
HpyF3I CTNAG 4 cut(s) 103, 363, 570, 633
HpySE526I ACGT 1 cut(s) 658
Hsp92II CATG 5 cut(s) 16, 305, 770, 788, 1066
Kzo9I GATC 3 cut(s) 252, 337, 508
Lsp1109I GCAGC 5 cut(s) 78, 574, 793, 860, 982
LweI GCATC 2 cut(s) 478, 805
MaeI CTAG 6 cut(s) 221, 257, 324, 551, 584, 609
MaeII ACGT 1 cut(s) 658
MaeIII GTNAC 2 cut(s) 479, 1163
MalI GATC 3 cut(s) 254, 339, 510
MboI GATC 3 cut(s) 252, 337, 508
MboII GAAGA 5 cut(s) 175, 308, 335, 441, 483
MflI RGATCY 2 cut(s) 252, 508
MhlI GDGCHC 3 cut(s) 273, 836, 1101
MluCI AATT 3 cut(s) 200, 741, 1142
MluI ACGCGT 1 cut(s) 168
MlyI GAGTC 1 cut(s) 631
MroXI GAANNNNTTC 1 cut(s) 354
MseI TTAA 8 cut(s) 65, 195, 249, 287, 392, 501, 744, 822
MslI CAYNNNNRTG 3 cut(s) 83, 695, 907
MspCI CTTAAG 1 cut(s) 500
MspI CCGG 3 cut(s) 83, 425, 1012
MspR9I CCNGG 2 cut(s) 83, 1013
MvnI CGCG 1 cut(s) 170
MwoI GCNNNNNNNGC 6 cut(s) 105, 217, 854, 1076, 1105, 1153
NciI CCSGG 2 cut(s) 83, 1013
NcoI CCATGG 1 cut(s) 12
NdeII GATC 3 cut(s) 252, 337, 508
NlaIII CATG 5 cut(s) 16, 305, 770, 788, 1066
NlaIV GGNNCC 2 cut(s) 334, 753
NmuCI GTSAC 2 cut(s) 479, 1163
NspI RCATGY 2 cut(s) 770, 788
NspV TTCGAA 1 cut(s) 161
OliI CACNNNNGTG 1 cut(s) 907
PaeI GCATGC 1 cut(s) 788
PceI AGGCCT 2 cut(s) 108, 225
PcsI WCGNNNNNNNCGW 1 cut(s) 167
PdmI GAANNNNTTC 1 cut(s) 354
PfeI GAWTC 1 cut(s) 30
Pfl23II CGTACG 1 cut(s) 171
PinAI ACCGGT 1 cut(s) 424
PkrI GCNGC 6 cut(s) 93, 589, 783, 850, 997, 1072
PleI GAGTC 1 cut(s) 630
PpsI GAGTC 1 cut(s) 630
PpuMI RGGWCCY 1 cut(s) 752
Psp124BI GAGCTC 1 cut(s) 273
Psp5II RGGWCCY 1 cut(s) 752
PspLI CGTACG 1 cut(s) 171
PspN4I GGNNCC 2 cut(s) 334, 753
PspPI GGNCC 2 cut(s) 52, 752
PspPPI RGGWCCY 1 cut(s) 752
PsrI GAACNNNNNNTAC 2 cut(s) 550, 582
PsuI RGATCY 2 cut(s) 252, 508
RsaI GTAC 3 cut(s) 173, 665, 773
RsaNI GTAC 3 cut(s) 172, 664, 772
RseI CAYNNNNRTG 3 cut(s) 83, 695, 907
SacI GAGCTC 1 cut(s) 273
SaqAI TTAA 8 cut(s) 65, 195, 249, 287, 392, 501, 744, 822
SatI GCNGC 6 cut(s) 92, 588, 782, 849, 996, 1071
Sau3AI GATC 3 cut(s) 252, 337, 508
Sau96I GGNCC 2 cut(s) 52, 752
SchI GAGTC 1 cut(s) 631
ScrFI CCNGG 2 cut(s) 83, 1013
SduI GDGCHC 3 cut(s) 273, 836, 1101
SfaNI GCATC 2 cut(s) 478, 805
SfcI CTRYAG 1 cut(s) 1074
SfuI TTCGAA 1 cut(s) 161
SinI GGWCC 2 cut(s) 52, 752
SmiMI CAYNNNNRTG 3 cut(s) 83, 695, 907
SmlI CTYRAG 2 cut(s) 500, 1103
SmoI CTYRAG 2 cut(s) 500, 1103
SphI GCATGC 1 cut(s) 788
Sse9I AATT 3 cut(s) 200, 741, 1142
SseBI AGGCCT 2 cut(s) 108, 225
SsiI CCGC 2 cut(s) 211, 1071
SspMI CTAG 6 cut(s) 221, 257, 324, 551, 584, 609
SstI GAGCTC 1 cut(s) 273
StuI AGGCCT 2 cut(s) 108, 225
StyD4I CCNGG 2 cut(s) 81, 1011
StyI CCWWGG 3 cut(s) 12, 379, 1172
TaaI ACNGT 2 cut(s) 397, 697
TaiI ACGT 1 cut(s) 661
TaqI TCGA 3 cut(s) 161, 273, 1151
TasI AATT 3 cut(s) 200, 741, 1142
TatI WGTACW 1 cut(s) 771
TauI GCSGC 1 cut(s) 1073
TfiI GAWTC 1 cut(s) 30
Tru1I TTAA 8 cut(s) 65, 195, 249, 287, 392, 501, 744, 822
Tru9I TTAA 8 cut(s) 65, 195, 249, 287, 392, 501, 744, 822
TscAI CASTG 5 cut(s) 48, 371, 702, 984, 1061
TseFI GTSAC 2 cut(s) 479, 1163
TseI GCWGC 5 cut(s) 91, 587, 781, 848, 995
Tsp45I GTSAC 2 cut(s) 479, 1163
TspDTI ATGAA 3 cut(s) 62, 318, 1051
TspGWI ACGGA 1 cut(s) 51
TspRI CASTG 5 cut(s) 48, 371, 702, 984, 1061
Vha464I CTTAAG 1 cut(s) 500
VneI GTGCAC 1 cut(s) 832
VpaK11BI GGWCC 2 cut(s) 52, 752
XceI RCATGY 2 cut(s) 770, 788
XmnI GAANNNNTTC 1 cut(s) 354
XspI CTAG 6 cut(s) 221, 257, 324, 551, 584, 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.