Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001488

Physical Location & Seq

Genomic Coordinates Reverse (-)

26705854 .. 26711928

Gene Structure 6075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG267300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGCGATTGCAGCGGCAGCTGTCATCGTTCCACTCGGCCTCCTCTTCTTCCTCTCTGGCCTCTTTGTCAATCTCCTCCAGGCGATTTGCTTCGTTCTTATTCGGCCTGTGTCGAAGAATATATACAGAAGAATCAACAGAGTGCTGGCAGAGCTGCTGTGGCTGGAGCTCGTTTGGATCATAGATTGGTGGGCAGGCGTCAAGATCAAAGTGTACACAGACCCTGAAACCTTCCGTTTAATGGGTAAAGAACATGCACTTGTCATATGCAATCACAAAAGTGATATTGATTGGCTTGTTGGATGGGTTCTAGCTCAGCGGTCAGGTTGCCTTGGCAGCTCATTAGCTGTAATGAAGAAATCATCCAAATTTCTTCCGGTAATAGGGTGGTCAATGTGGTTTTCTGAATATCTCTTTTTGGAAAGAAGCTGGGCAAAAGATGAAAGCACAATAAAGTCAGGTATTCAACGGCTGAAGGACTACCCTCAGCCCTTTTGGTTAGCTCTTTTTGTAGAAGGAACTCGTTTTACACAGGCAAAGCTTTTGGCAGCACAGGAATATGCCGCCTCAACAGGGCTACCTGTCCCTAGAAATGTTTTGATTCCTCGCACTAAGGGTTTTGTCTCAGCAGTAAGTCACATGCGCTCATTTGTTCCAGCCGTATATGATATAACGGTGGCTATTCCTAAAAGTTCACCTGCACCTACAATGCTAAGACTGTTTGAGGGGCGACCGTCTGTGGTGCACGTGCACATCAAGAGGCATGTGATGAAGGACTTGCCTGAAACTGATGATGCTGTTGCACAATGGTGTAAGGAAGTATTTGTGGCCAAGGTGGTTACTATACATGTGCTGCACAGTTACATTTCTGTAGCATTTCGTTATGATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003841 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008374 GO:0012505 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0042171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071617

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04072 map00561 map00564 map01100 map01110 map04072

Pfam Domains

Protein Families

Acyltransf_C Acyltransferase

Protein Analysis

297

Amino Acids

33.7

Weight (kDa)

9.55

Isoelectric Point (pI)

40.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyltransferase	PF01553	80 - 228	3.2e-15	Acyltransferase
Acyltransf_C	PF16076	239 - 278	4.2e-12	Acyltransferase C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57650
fragaria_vesca	FvH4_6g23240 FvH4_6g23240 FvH4_6g23240 FvH4_6g36950 FvH4_6g36960 FvH4_6g36962
malus_domestica	MD12G1066700.v1.1 MD14G1067300.v1.1
prunus_persica	Prupe.7G067600_v2.0.a1
pyrus_communis	pycom12g05810 pycom14g05530
rosa_chinensis	RchiOBHm_Chr2g0149391 RchiOBHm_Chr2g0149421 RchiOBHm_Chr2g0149441 RchiOBHm_Chr2g0149461 RchiOBHm_Chr2g0149471 RchiOBHm_Chr3g0481071
rosa_laevigata	RLG00000020324 RLG00000020404 RLG00000020406 RLG00000020407 RLG00000023423
rosa_multiflora	Rmu_co8437371.1_g000001 Rmu_sc0000873.1_g000022 Rmu_sc0000873.1_g000026 Rmu_sc0000873.1_g000027 Rmu_sc0000873.1_g000029 Rmu_sc0001551.1_g000024 Rmu_sc0002187.1_g000054
rosa_roxburghii	Rroxscaffold_2G00098120 Rroxscaffold_2G00098130 Rroxscaffold_6G00400660
rosa_rugosa	Rorug03G0190000 Rorug03G0190100 Rorug04G0357400 Rorug04G0357500 Rorug04G0357600
rosa_samantha	Rh3AG240300 Rh3BG276000 Rh3CG271300 Rh3DG267300 Rh5BG363100
rosa_wichuraiana	Rw2G038400 Rw2G038410 Rw2G038420 Rw2G038430 Rw2G038440 Rw2G038450 Rw3G021460 Rw6G011250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	706
Acc36I	ACCTGC	1 cut(s)	706
AciI	CCGC	3 cut(s)	14, 319, 564
AclWI	GGATC	1 cut(s)	185
AcoI	YGGCCR	1 cut(s)	828
AcsI	RAATTY	1 cut(s)	368
AcuI	CTGAAG	1 cut(s)	494
AcvI	CACGTG	1 cut(s)	748
AcyI	GRCGYC	1 cut(s)	198
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	3 cut(s)	241, 383, 573
AflIII	ACRYGT	1 cut(s)	847
AgsI	TTSAA	1 cut(s)	467
AjnI	CCWGG	1 cut(s)	78
AleI	CACNNNNGTG	2 cut(s)	279, 808
AluBI	AGCT	9 cut(s)	20, 154, 169, 314, 339, 347, 429, 503, 541
AluI	AGCT	9 cut(s)	20, 154, 169, 314, 339, 347, 429, 503, 541
Alw21I	GWGCWC	3 cut(s)	171, 747, 753
Alw26I	GTCTC	1 cut(s)	628
Alw44I	GTGCAC	2 cut(s)	743, 749
AlwI	GGATC	1 cut(s)	185
AlwNI	CAGNNNCTG	1 cut(s)	224
AoxI	GGCC	4 cut(s)	37, 58, 104, 828
ApaLI	GTGCAC	2 cut(s)	743, 749
ApeKI	GCWGC	6 cut(s)	11, 17, 154, 336, 548, 853
ApoI	RAATTY	1 cut(s)	368
AspLEI	GCGC	1 cut(s)	645
AsuHPI	GGTGA	1 cut(s)	687
BaeGI	GKGCMC	2 cut(s)	747, 753
BalI	TGGCCA	1 cut(s)	830
BanII	GRGCYC	1 cut(s)	171
BarI	GAAGNNNNNNTAC	2 cut(s)	107, 139
BbrPI	CACGTG	1 cut(s)	748
Bbv12I	GWGCWC	3 cut(s)	171, 747, 753
BbvCI	CCTCAGC	1 cut(s)	486
BbvI	GCAGC	6 cut(s)	23, 29, 141, 348, 560, 840
BccI	CCATC	1 cut(s)	297
BceAI	ACGGC	2 cut(s)	485, 644
BciT130I	CCWGG	1 cut(s)	80
BcoDI	GTCTC	1 cut(s)	628
BfaI	CTAG	2 cut(s)	311, 588
BfmI	CTRYAG	1 cut(s)	870
BfuAI	ACCTGC	1 cut(s)	706
BisI	GCNGC	8 cut(s)	12, 15, 18, 155, 337, 549, 564, 854
BlpI	GCTNAGC	1 cut(s)	315
BlsI	GCNGC	8 cut(s)	13, 16, 19, 156, 338, 550, 565, 855
Bme1390I	CCNGG	1 cut(s)	80
BmrFI	CCNGG	1 cut(s)	80
BmsI	GCATC	1 cut(s)	784
BpmI	CTGGAG	2 cut(s)	62, 185
Bpu10I	CCTNAGC	1 cut(s)	486
Bpu1102I	GCTNAGC	1 cut(s)	315
BsaAI	YACGTR	1 cut(s)	748
BsaHI	GRCGYC	1 cut(s)	198
BsaJI	CCNNGG	2 cut(s)	331, 831
BsaWI	WCCGGW	1 cut(s)	376
BsaXI	ACNNNNNCTCC	2 cut(s)	24, 54
Bsc4I	CCNNNNNNNGG	3 cut(s)	241, 383, 573
BseBI	CCWGG	1 cut(s)	80
BseDI	CCNNGG	2 cut(s)	331, 831
BseGI	GGATG	2 cut(s)	308, 362
BseLI	CCNNNNNNNGG	3 cut(s)	241, 383, 573
BseMII	CTCAG	3 cut(s)	329, 500, 639
BseRI	GAGGAG	2 cut(s)	32, 65
BseSI	GKGCMC	2 cut(s)	747, 753
BseXI	GCAGC	6 cut(s)	23, 29, 141, 348, 560, 840
BseYI	CCCAGC	1 cut(s)	429
BsgI	GTGCAG	2 cut(s)	684, 839
Bsh1285I	CGRYCG	1 cut(s)	734
BshFI	GGCC	4 cut(s)	39, 60, 106, 830
BsiEI	CGRYCG	1 cut(s)	734
BsiHKAI	GWGCWC	3 cut(s)	171, 747, 753
BsiSI	CCGG	1 cut(s)	377
BslFI	GGGAC	1 cut(s)	569
BslI	CCNNNNNNNGG	3 cut(s)	241, 383, 573
BsmAI	GTCTC	1 cut(s)	628
BsmFI	GGGAC	1 cut(s)	569
BsnI	GGCC	4 cut(s)	39, 60, 106, 830
Bsp1286I	GDGCHC	3 cut(s)	171, 747, 753
Bsp1407I	TGTACA	1 cut(s)	213
Bsp143I	GATC	2 cut(s)	177, 204
Bsp1720I	GCTNAGC	1 cut(s)	315
BspACI	CCGC	3 cut(s)	14, 319, 564
BspANI	GGCC	4 cut(s)	39, 60, 106, 830
BspCNI	CTCAG	3 cut(s)	328, 499, 638
BspMI	ACCTGC	1 cut(s)	706
BspPI	GGATC	1 cut(s)	185
BsrGI	TGTACA	1 cut(s)	213
BssECI	CCNNGG	2 cut(s)	331, 831
BssMI	GATC	2 cut(s)	177, 204
BssNI	GRCGYC	1 cut(s)	198
BssT1I	CCWWGG	2 cut(s)	331, 831
Bst2UI	CCWGG	1 cut(s)	80
Bst4CI	ACNGT	4 cut(s)	676, 720, 735, 860
Bst6I	CTCTTC	1 cut(s)	50
BstACI	GRCGYC	1 cut(s)	198
BstAUI	TGTACA	1 cut(s)	213
BstBAI	YACGTR	1 cut(s)	748
BstC8I	GCNNGC	2 cut(s)	147, 196
BstDEI	CTNAG	5 cut(s)	315, 486, 612, 625, 713
BstF5I	GGATG	2 cut(s)	308, 362
BstHHI	GCGC	1 cut(s)	645
BstKTI	GATC	2 cut(s)	180, 207
BstMAI	GTCTC	1 cut(s)	628
BstMBI	GATC	2 cut(s)	177, 204
BstMCI	CGRYCG	1 cut(s)	734
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 17, 151, 160, 336
BstNI	CCWGG	1 cut(s)	80
BstNSI	RCATGY	4 cut(s)	257, 643, 767, 851
BstSCI	CCNGG	1 cut(s)	78
BstSFI	CTRYAG	1 cut(s)	870
BstSLI	GKGCMC	2 cut(s)	747, 753
BstV1I	GCAGC	6 cut(s)	23, 29, 141, 348, 560, 840
BsuRI	GGCC	4 cut(s)	39, 60, 106, 830
BtsCI	GGATG	2 cut(s)	308, 362
BveI	ACCTGC	1 cut(s)	706
Cac8I	GCNNGC	2 cut(s)	147, 196
CaiI	CAGNNNCTG	1 cut(s)	224
CfoI	GCGC	1 cut(s)	645
CseI	GACGC	1 cut(s)	187
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	4 cut(s)	254, 640, 764, 848
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	5 cut(s)	315, 486, 612, 625, 713
DpnI	GATC	2 cut(s)	179, 206
DpnII	GATC	2 cut(s)	177, 204
EaeI	YGGCCR	1 cut(s)	828
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
Ecl136II	GAGCTC	1 cut(s)	169
Eco130I	CCWWGG	2 cut(s)	331, 831
Eco24I	GRGCYC	1 cut(s)	171
Eco53kI	GAGCTC	1 cut(s)	169
Eco57I	CTGAAG	1 cut(s)	494
Eco72I	CACGTG	1 cut(s)	748
EcoICRI	GAGCTC	1 cut(s)	169
EcoRII	CCWGG	1 cut(s)	78
EcoT14I	CCWWGG	2 cut(s)	331, 831
EcoT38I	GRGCYC	1 cut(s)	171
ErhI	CCWWGG	2 cut(s)	331, 831
FaeI	CATG	4 cut(s)	257, 643, 767, 851
FaqI	GGGAC	1 cut(s)	569
FatI	CATG	4 cut(s)	253, 639, 763, 847
FauNDI	CATATG	1 cut(s)	266
Fnu4HI	GCNGC	8 cut(s)	12, 15, 18, 155, 337, 549, 564, 854
FokI	GGATG	2 cut(s)	315, 349
FriOI	GRGCYC	1 cut(s)	171
Fsp4HI	GCNGC	8 cut(s)	12, 15, 18, 155, 337, 549, 564, 854
FspBI	CTAG	2 cut(s)	311, 588
GlaI	GCGC	1 cut(s)	644
GluI	GCNGC	8 cut(s)	12, 15, 18, 155, 337, 549, 564, 854
GsaI	CCCAGC	1 cut(s)	433
GsuI	CTGGAG	2 cut(s)	62, 185
HaeIII	GGCC	4 cut(s)	39, 60, 106, 830
HapII	CCGG	1 cut(s)	377
HgaI	GACGC	1 cut(s)	187
HhaI	GCGC	1 cut(s)	645
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	4 cut(s)	257, 643, 767, 851
Hin6I	GCGC	1 cut(s)	643
HinP1I	GCGC	1 cut(s)	643
HindIII	AAGCTT	1 cut(s)	539
HinfI	GANTC	2 cut(s)	132, 601
HpaII	CCGG	1 cut(s)	377
HphI	GGTGA	1 cut(s)	687
Hpy166II	GTNNAC	5 cut(s)	214, 216, 695, 745, 751
Hpy188I	TCNGA	1 cut(s)	406
Hpy188III	TCNNGA	2 cut(s)	202, 757
Hpy8I	GTNNAC	5 cut(s)	214, 216, 695, 745, 751
HpyAV	CCTTC	4 cut(s)	241, 469, 509, 766
HpyCH4III	ACNGT	4 cut(s)	676, 720, 735, 860
HpyCH4IV	ACGT	1 cut(s)	747
HpyCH4V	TGCA	8 cut(s)	11, 257, 270, 701, 745, 751, 803, 856
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 17, 151, 160, 336
HpyF3I	CTNAG	5 cut(s)	315, 486, 612, 625, 713
HpySE526I	ACGT	1 cut(s)	747
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	4 cut(s)	257, 643, 767, 851
HspAI	GCGC	1 cut(s)	643
Kzo9I	GATC	2 cut(s)	177, 204
LmnI	GCTCC	1 cut(s)	166
Lsp1109I	GCAGC	6 cut(s)	23, 29, 141, 348, 560, 840
LweI	GCATC	1 cut(s)	784
MaeI	CTAG	2 cut(s)	311, 588
MaeII	ACGT	1 cut(s)	747
MaeIII	GTNAC	3 cut(s)	635, 838, 860
MalI	GATC	2 cut(s)	179, 206
MboI	GATC	2 cut(s)	177, 204
MboII	GAAGA	6 cut(s)	37, 40, 127, 141, 365, 367
MhlI	GDGCHC	3 cut(s)	171, 747, 753
MlsI	TGGCCA	1 cut(s)	830
MluCI	AATT	1 cut(s)	368
MluNI	TGGCCA	1 cut(s)	830
MmeI	TCCRAC	1 cut(s)	280
Mox20I	TGGCCA	1 cut(s)	830
MscI	TGGCCA	1 cut(s)	830
MseI	TTAA	1 cut(s)	239
MslI	CAYNNNNRTG	2 cut(s)	279, 808
Msp20I	TGGCCA	1 cut(s)	830
MspA1I	CMGCKG	3 cut(s)	14, 20, 319
MspI	CCGG	1 cut(s)	377
MspR9I	CCNGG	1 cut(s)	80
MvaI	CCWGG	1 cut(s)	80
MwoI	GCNNNNNNNGC	5 cut(s)	11, 17, 151, 160, 336
NdeI	CATATG	1 cut(s)	266
NdeII	GATC	2 cut(s)	177, 204
NlaIII	CATG	4 cut(s)	257, 643, 767, 851
NmeAIII	GCCGAG	1 cut(s)	15
NmuCI	GTSAC	1 cut(s)	635
NspI	RCATGY	4 cut(s)	257, 643, 767, 851
OliI	CACNNNNGTG	2 cut(s)	279, 808
PaqCI	CACCTGC	1 cut(s)	706
PciI	ACATGT	1 cut(s)	847
PfeI	GAWTC	2 cut(s)	132, 601
PkrI	GCNGC	8 cut(s)	13, 16, 19, 156, 338, 550, 565, 855
PmaCI	CACGTG	1 cut(s)	748
PmlI	CACGTG	1 cut(s)	748
Ppu21I	YACGTR	1 cut(s)	748
PscI	ACATGT	1 cut(s)	847
Psp124BI	GAGCTC	1 cut(s)	171
Psp6I	CCWGG	1 cut(s)	78
PspCI	CACGTG	1 cut(s)	748
PspFI	CCCAGC	1 cut(s)	429
PspGI	CCWGG	1 cut(s)	78
PsrI	GAACNNNNNNTAC	2 cut(s)	511, 543
PstNI	CAGNNNCTG	1 cut(s)	224
PvuII	CAGCTG	1 cut(s)	20
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
RseI	CAYNNNNRTG	2 cut(s)	279, 808
SacI	GAGCTC	1 cut(s)	171
SaqAI	TTAA	1 cut(s)	239
SatI	GCNGC	8 cut(s)	12, 15, 18, 155, 337, 549, 564, 854
Sau3AI	GATC	2 cut(s)	177, 204
ScrFI	CCNGG	1 cut(s)	80
SduI	GDGCHC	3 cut(s)	171, 747, 753
SfaNI	GCATC	1 cut(s)	784
SfcI	CTRYAG	1 cut(s)	870
SmiMI	CAYNNNNRTG	2 cut(s)	279, 808
Sse9I	AATT	1 cut(s)	368
SsiI	CCGC	3 cut(s)	14, 319, 564
SspMI	CTAG	2 cut(s)	311, 588
SstI	GAGCTC	1 cut(s)	171
StyD4I	CCNGG	1 cut(s)	78
StyI	CCWWGG	2 cut(s)	331, 831
TaaI	ACNGT	4 cut(s)	676, 720, 735, 860
TaiI	ACGT	1 cut(s)	750
TaqI	TCGA	1 cut(s)	113
TasI	AATT	1 cut(s)	368
TatI	WGTACW	1 cut(s)	213
TauI	GCSGC	2 cut(s)	17, 566
TfiI	GAWTC	2 cut(s)	132, 601
Tru1I	TTAA	1 cut(s)	239
Tru9I	TTAA	1 cut(s)	239
TseFI	GTSAC	1 cut(s)	635
TseI	GCWGC	6 cut(s)	11, 17, 154, 336, 548, 853
Tsp45I	GTSAC	1 cut(s)	635
TspDTI	ATGAA	3 cut(s)	368, 456, 785
TspGWI	ACGGA	1 cut(s)	224
VneI	GTGCAC	2 cut(s)	743, 749
XapI	RAATTY	1 cut(s)	368
XceI	RCATGY	4 cut(s)	257, 643, 767, 851
XspI	CTAG	2 cut(s)	311, 588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.