FvH4_6g36950

1-acyl-sn-glycerol-3-phosphate acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001488
Physical Location & Seq
Forward (+)
28996631 .. 29000882
4252 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g36950.t1

Sequence Viewer

Length: 909 bp
ATGGGCCTCGTTGATTGGTGGGCTGGCGTTAGGATCCTAGAGTGCATAGAGCAGGAAACCAGTAACTTAAAGGGGGAAGAATGTGAACTTGTCATATCCAATGTTAGAAATGATGCCGATCCTCTTCTGGAACAGGTTCTTGCTCAGTGGTCTGGTTTGCTTGGCAGTTCATTAGCTGTAATAAAGACATCAGCAAGATACAGTCTGTCAGCTCTGAAGGACTTCCCTCTGCCCTTTTGGCTATCTGTTGTCCTCGAAAGAACTGGGTTTACTCAGGGAGATCTTCGAGCTGCTCAGAGGCTTCCTGTCCCTAGCAAGGTTTTGAGTTCTGATACTAAGGATTTAGCCTATGCAGTAAGACGTGCGTACTCTGCTGTTCCAGCCATTTATGTTATAACAGTGGCCATTCGTAAAACGTCACCTCCACCCACACTTGAAAGTGTAATTAAAGGAGGACCTTCTGTGGTGCATGTGTACATCAAGAGGCATGCGACTAAAAAATGGCTTCAAACTGATGATGCTGTGGAAAAGTTGTGCAGAGAAATACTTGCAGCCAAGGATGCATCATTGGACGAACATATAACAGAGCACAGATTTGGTGATAAAGGATTGCAAGCTATTGGTCGGCCACCAAAGTGTTTCTTGGTTGTTATATCTTCAATTTTGTTGTGGGCTCTAAAGCTCAACTTTGTCTGCCGTTCTACACTGCTTGTATCGAGTGCTGCCTTCTTTACTGGCCGGATGCTTGCTCTGTTTGGACGTGGAGTGCTTTTGATGTTGCGGTGTTTGATGGGAGCAGTTATAGCAAACATTACTTGGTCAGATCACCTGAAGCCCATCTGTGAAGTGTTGATTGTGGAATTTTTTGAAACCCTTGATATTCTCCCTTATGATGTAGATTGGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko00564 ko01100 ko01110 ko04072 map00561 map00564 map01100 map01110 map04072
Pfam Domains
Protein Families
Acyltransf_C Acyltransferase

Protein Analysis

303

Amino Acids

33.62

Weight (kDa)

7.58

Isoelectric Point (pI)

40.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyltransf_C PF16076 148 - 218 1e-09 Acyltransferase C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 395
AciI CCGC 1 cut(s) 781
AclWI GGATC 3 cut(s) 28, 41, 113
AcoI YGGCCR 3 cut(s) 402, 626, 736
AcsI RAATTY 1 cut(s) 860
AcuI CTGAAG 2 cut(s) 236, 851
AfaI GTAC 2 cut(s) 368, 476
AfiI CCNNNNNNNGG 1 cut(s) 316
AgsI TTSAA 4 cut(s) 437, 509, 660, 869
AjiI CACGTC 2 cut(s) 362, 761
AleI CACNNNNGTG 1 cut(s) 634
AluBI AGCT 5 cut(s) 176, 212, 290, 617, 682
AluI AGCT 5 cut(s) 176, 212, 290, 617, 682
Alw21I GWGCWC 1 cut(s) 591
AlwI GGATC 3 cut(s) 28, 41, 113
AoxI GGCC 4 cut(s) 4, 402, 626, 736
ApeKI GCWGC 3 cut(s) 290, 551, 722
ApoI RAATTY 1 cut(s) 860
Asp700I GAANNNNTTC 2 cut(s) 135, 221
AspS9I GGNCC 2 cut(s) 4, 455
AsuHPI GGTGA 3 cut(s) 411, 611, 818
AvaII GGWCC 1 cut(s) 455
BalI TGGCCA 1 cut(s) 404
BamHI GGATCC 1 cut(s) 33
BanII GRGCYC 1 cut(s) 676
Bbv12I GWGCWC 1 cut(s) 591
BbvI GCAGC 3 cut(s) 277, 563, 709
BccI CCATC 2 cut(s) 784, 845
BceAI ACGGC 1 cut(s) 681
BfaI CTAG 2 cut(s) 38, 312
BglI GCCNNNNNGGC 1 cut(s) 238
BglII AGATCT 1 cut(s) 280
BisI GCNGC 3 cut(s) 291, 552, 723
BlsI GCNGC 3 cut(s) 292, 553, 724
Bme18I GGWCC 1 cut(s) 455
BmgBI CACGTC 2 cut(s) 362, 761
BmgT120I GGNCC 2 cut(s) 4, 455
BmiI GGNNCC 1 cut(s) 35
BmrI ACTGGG 1 cut(s) 273
BmsI GCATC 5 cut(s) 103, 508, 550, 572, 732
BmuI ACTGGG 1 cut(s) 273
BsaBI GATNNNNATC 1 cut(s) 117
BsaJI CCNNGG 1 cut(s) 555
BsaXI ACNNNNNCTCC 2 cut(s) 406, 436
Bsc4I CCNNNNNNNGG 1 cut(s) 316
Bse1I ACTGG 3 cut(s) 60, 268, 739
Bse8I GATNNNNATC 1 cut(s) 117
BseDI CCNNGG 1 cut(s) 555
BseGI GGATG 2 cut(s) 565, 747
BseJI GATNNNNATC 1 cut(s) 117
BseLI CCNNNNNNNGG 1 cut(s) 316
BseMII CTCAG 3 cut(s) 158, 287, 308
BseNI ACTGG 3 cut(s) 60, 268, 739
BseXI GCAGC 3 cut(s) 277, 563, 709
BsgI GTGCAG 1 cut(s) 556
BshFI GGCC 4 cut(s) 6, 404, 628, 738
BsiHKAI GWGCWC 1 cut(s) 591
BsiSI CCGG 1 cut(s) 739
BslFI GGGAC 1 cut(s) 293
BslI CCNNNNNNNGG 1 cut(s) 316
BsmFI GGGAC 1 cut(s) 293
BsnI GGCC 4 cut(s) 6, 404, 628, 738
Bsp1286I GDGCHC 2 cut(s) 591, 676
Bsp1407I TGTACA 1 cut(s) 474
Bsp143I GATC 4 cut(s) 33, 118, 280, 823
BspACI CCGC 1 cut(s) 781
BspANI GGCC 4 cut(s) 6, 404, 628, 738
BspCNI CTCAG 3 cut(s) 157, 286, 307
BspLI GGNNCC 1 cut(s) 35
BspPI GGATC 3 cut(s) 28, 41, 113
BsrGI TGTACA 1 cut(s) 474
BsrI ACTGG 3 cut(s) 60, 268, 739
BssECI CCNNGG 1 cut(s) 555
BssMI GATC 4 cut(s) 33, 118, 280, 823
BssT1I CCWWGG 1 cut(s) 555
Bst4CI ACNGT 2 cut(s) 203, 400
Bst6I CTCTTC 1 cut(s) 129
BstAUI TGTACA 1 cut(s) 474
BstC8I GCNNGC 4 cut(s) 25, 489, 615, 747
BstDEI CTNAG 4 cut(s) 144, 273, 294, 336
BstF5I GGATG 2 cut(s) 565, 747
BstKTI GATC 4 cut(s) 36, 121, 283, 826
BstMBI GATC 4 cut(s) 33, 118, 280, 823
BstMWI GCNNNNNNNGC 5 cut(s) 238, 371, 380, 560, 803
BstNSI RCATGY 2 cut(s) 473, 491
BstV1I GCAGC 3 cut(s) 277, 563, 709
BstX2I RGATCY 2 cut(s) 33, 280
BstYI RGATCY 2 cut(s) 33, 280
BsuRI GGCC 4 cut(s) 6, 404, 628, 738
BtrI CACGTC 2 cut(s) 362, 761
BtsCI GGATG 2 cut(s) 565, 747
BtsI GCAGTG 1 cut(s) 704
BtsIMutI CAGTG 3 cut(s) 152, 405, 704
Cac8I GCNNGC 4 cut(s) 25, 489, 615, 747
Cfr13I GGNCC 2 cut(s) 4, 455
Csp6I GTAC 2 cut(s) 367, 475
CviAII CATG 2 cut(s) 470, 488
CviQI GTAC 2 cut(s) 367, 475
DdeI CTNAG 4 cut(s) 144, 273, 294, 336
DpnI GATC 4 cut(s) 35, 120, 282, 825
DpnII GATC 4 cut(s) 33, 118, 280, 823
EaeI YGGCCR 3 cut(s) 402, 626, 736
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
Eco130I CCWWGG 1 cut(s) 555
Eco24I GRGCYC 1 cut(s) 676
Eco47I GGWCC 1 cut(s) 455
Eco57I CTGAAG 2 cut(s) 236, 851
EcoO109I RGGNCCY 1 cut(s) 455
EcoT14I CCWWGG 1 cut(s) 555
EcoT22I ATGCAT 1 cut(s) 565
EcoT38I GRGCYC 1 cut(s) 676
ErhI CCWWGG 1 cut(s) 555
FaeI CATG 2 cut(s) 473, 491
FalI AAGNNNNNCTT 4 cut(s) 626, 658, 671, 703
FaqI GGGAC 1 cut(s) 293
FatI CATG 2 cut(s) 469, 487
Fnu4HI GCNGC 3 cut(s) 291, 552, 723
FokI GGATG 2 cut(s) 572, 754
FriOI GRGCYC 1 cut(s) 676
Fsp4HI GCNGC 3 cut(s) 291, 552, 723
FspBI CTAG 2 cut(s) 38, 312
GluI GCNGC 3 cut(s) 291, 552, 723
HaeIII GGCC 4 cut(s) 6, 404, 628, 738
HapII CCGG 1 cut(s) 739
Hin1II CATG 2 cut(s) 473, 491
HpaII CCGG 1 cut(s) 739
HphI GGTGA 3 cut(s) 411, 611, 818
Hpy166II GTNNAC 3 cut(s) 86, 270, 475
Hpy188I TCNGA 4 cut(s) 216, 297, 331, 823
Hpy188III TCNNGA 2 cut(s) 128, 481
Hpy8I GTNNAC 3 cut(s) 86, 270, 475
HpyAV CCTTC 3 cut(s) 211, 468, 736
HpyCH4III ACNGT 2 cut(s) 203, 400
HpyCH4IV ACGT 3 cut(s) 361, 416, 760
HpyCH4V TGCA 7 cut(s) 45, 353, 469, 537, 551, 563, 613
HpyF10VI GCNNNNNNNGC 5 cut(s) 238, 371, 380, 560, 803
HpyF3I CTNAG 4 cut(s) 144, 273, 294, 336
HpySE526I ACGT 3 cut(s) 361, 416, 760
Hsp92II CATG 2 cut(s) 473, 491
Kzo9I GATC 4 cut(s) 33, 118, 280, 823
LmnI GCTCC 1 cut(s) 794
Lsp1109I GCAGC 3 cut(s) 277, 563, 709
LweI GCATC 5 cut(s) 103, 508, 550, 572, 732
MaeI CTAG 2 cut(s) 38, 312
MaeII ACGT 3 cut(s) 361, 416, 760
MaeIII GTNAC 2 cut(s) 62, 417
MalI GATC 4 cut(s) 35, 120, 282, 825
MboI GATC 4 cut(s) 33, 118, 280, 823
MboII GAAGA 4 cut(s) 89, 116, 275, 648
MflI RGATCY 2 cut(s) 33, 280
MhlI GDGCHC 2 cut(s) 591, 676
MlsI TGGCCA 1 cut(s) 404
MluCI AATT 3 cut(s) 444, 660, 860
MluNI TGGCCA 1 cut(s) 404
MnlI CCTC 8 cut(s) 17, 132, 237, 263, 291, 432, 446, 477
Mox20I TGGCCA 1 cut(s) 404
Mph1103I ATGCAT 1 cut(s) 565
MroXI GAANNNNTTC 2 cut(s) 135, 221
MscI TGGCCA 1 cut(s) 404
MseI TTAA 2 cut(s) 68, 447
MslI CAYNNNNRTG 1 cut(s) 634
Msp20I TGGCCA 1 cut(s) 404
MspI CCGG 1 cut(s) 739
MwoI GCNNNNNNNGC 5 cut(s) 238, 371, 380, 560, 803
NdeII GATC 4 cut(s) 33, 118, 280, 823
NlaIII CATG 2 cut(s) 473, 491
NlaIV GGNNCC 1 cut(s) 35
NmuCI GTSAC 1 cut(s) 417
NsiI ATGCAT 1 cut(s) 565
NspI RCATGY 2 cut(s) 473, 491
OliI CACNNNNGTG 1 cut(s) 634
PaeI GCATGC 1 cut(s) 491
PdmI GAANNNNTTC 2 cut(s) 135, 221
PkrI GCNGC 3 cut(s) 292, 553, 724
PpuMI RGGWCCY 1 cut(s) 455
PsiI TTATAA 1 cut(s) 395
Psp5II RGGWCCY 1 cut(s) 455
PspN4I GGNNCC 1 cut(s) 35
PspPI GGNCC 2 cut(s) 4, 455
PspPPI RGGWCCY 1 cut(s) 455
PsrI GAACNNNNNNTAC 2 cut(s) 253, 285
PsuI RGATCY 2 cut(s) 33, 280
RsaI GTAC 2 cut(s) 368, 476
RsaNI GTAC 2 cut(s) 367, 475
RseI CAYNNNNRTG 1 cut(s) 634
SaqAI TTAA 2 cut(s) 68, 447
SatI GCNGC 3 cut(s) 291, 552, 723
Sau3AI GATC 4 cut(s) 33, 118, 280, 823
Sau96I GGNCC 2 cut(s) 4, 455
SduI GDGCHC 2 cut(s) 591, 676
SfaNI GCATC 5 cut(s) 103, 508, 550, 572, 732
SinI GGWCC 1 cut(s) 455
SmiMI CAYNNNNRTG 1 cut(s) 634
SphI GCATGC 1 cut(s) 491
Sse9I AATT 3 cut(s) 444, 660, 860
SsiI CCGC 1 cut(s) 781
SspMI CTAG 2 cut(s) 38, 312
StyI CCWWGG 1 cut(s) 555
TaaI ACNGT 2 cut(s) 203, 400
TaiI ACGT 3 cut(s) 364, 419, 763
TaqI TCGA 3 cut(s) 255, 286, 716
TasI AATT 3 cut(s) 444, 660, 860
TatI WGTACW 1 cut(s) 474
Tru1I TTAA 2 cut(s) 68, 447
Tru9I TTAA 2 cut(s) 68, 447
TscAI CASTG 3 cut(s) 152, 405, 711
TseFI GTSAC 1 cut(s) 417
TseI GCWGC 3 cut(s) 290, 551, 722
Tsp45I GTSAC 1 cut(s) 417
TspDTI ATGAA 1 cut(s) 159
TspRI CASTG 3 cut(s) 152, 405, 711
VpaK11BI GGWCC 1 cut(s) 455
XapI RAATTY 1 cut(s) 860
XceI RCATGY 2 cut(s) 473, 491
XmnI GAANNNNTTC 2 cut(s) 135, 221
XspI CTAG 2 cut(s) 38, 312
Zsp2I ATGCAT 1 cut(s) 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.