Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001488

Physical Location & Seq

Genomic Coordinates Reverse (-)

26795618 .. 26801582

Gene Structure 5965 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG271300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCGATTGCAGCGGCAGCTGTCATCGTTCCACTCGGCCTCCTCTTCTTCCTCTCTGGCCTCTTTGTCAATCTCCTCCAGGCGATTTGCTTCGTTCTTATTCGGCCTGTGTCGAAGAATATATACAGAAGAATCAACAGAGTGCTGGCAGAGCTGCTGTGGCTGGAGCTCGTTTGGATCATAGATTGGTGGGCAGGCGTCAAGATCAAAGTGTACACAGACCCTGAAACCTTCCGTTTAATGGGTAAAGAACATGCACTTGTCATATGCAATCACAAAAGTGATATTGATTGGCTTGTTGGATGGGTTCTAGCTCAGCGGTCAGGTTGCCTTGGCAGCTCATTAGCTGTAATGAAGAAATCATCCAAATTTCTTCCGGTAATAGGGTGGTCAATGTGGTTTTCTGAATATCTCTTTTTGGAAAGAAGCTGGGCAAAAGATGAAAGCACAATAAAGTCAGGTATTCAACGGCTGAAGGACTACCCTCAGCCCTTTTGGTTAGCTCTTTTTGTAGAAGGAACTCGTTTTACACAGGCAAAGCTTTTGGCAGCACAGGAATATGCCGCCTCAACAGGGCTAGCTGTCCCTAGAAATGTTTTGATTCCTCGCACTAAGGGTTTTGTCTCAGCAGTAAGTCACATGCGCTCATTTGTTCCAGCCGTATATGATATAACGGTGGCTATTCCTAAAAGTTCACCTGCACCTACAATGCTAAGACTGTTTGAGGGGCGACCGTCTGTGGTGCACGTGCACATCAAGAGGCATGTGATGAAGGACTTGCCTGAAACTGATGATGCTGTTGCACAATGGTGTAAGGAAGCATTTGTGGCCAAGGATGCATTATTGGACAAACATGCAGTAGAGCAAACTTTTGGCGATCAAGAATTGCAAATTACTAGGCGGCCACTGAAGTCACTTTTGGTGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003841 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008374 GO:0012505 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0042171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071617

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04072 map00561 map00564 map01100 map01110 map04072

Pfam Domains

Protein Families

Acyltransf_C Acyltransferase

Protein Analysis

309

Amino Acids

34.9

Weight (kDa)

9.47

Isoelectric Point (pI)

42.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyltransferase	PF01553	80 - 228	3.5e-15	Acyltransferase
Acyltransf_C	PF16076	239 - 308	8.1e-22	Acyltransferase C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57650
fragaria_vesca	FvH4_6g23240 FvH4_6g23240 FvH4_6g23240 FvH4_6g36950 FvH4_6g36960 FvH4_6g36962
malus_domestica	MD12G1066700.v1.1 MD14G1067300.v1.1
prunus_persica	Prupe.7G067600_v2.0.a1
pyrus_communis	pycom12g05810 pycom14g05530
rosa_chinensis	RchiOBHm_Chr2g0149391 RchiOBHm_Chr2g0149421 RchiOBHm_Chr2g0149441 RchiOBHm_Chr2g0149461 RchiOBHm_Chr2g0149471 RchiOBHm_Chr3g0481071
rosa_laevigata	RLG00000020324 RLG00000020404 RLG00000020406 RLG00000020407 RLG00000023423
rosa_multiflora	Rmu_co8437371.1_g000001 Rmu_sc0000873.1_g000022 Rmu_sc0000873.1_g000026 Rmu_sc0000873.1_g000027 Rmu_sc0000873.1_g000029 Rmu_sc0001551.1_g000024 Rmu_sc0002187.1_g000054
rosa_roxburghii	Rroxscaffold_2G00098120 Rroxscaffold_2G00098130 Rroxscaffold_6G00400660
rosa_rugosa	Rorug03G0190000 Rorug03G0190100 Rorug04G0357400 Rorug04G0357500 Rorug04G0357600
rosa_samantha	Rh3AG240300 Rh3BG276000 Rh3CG271300 Rh3DG267300 Rh5BG363100
rosa_wichuraiana	Rw2G038400 Rw2G038410 Rw2G038420 Rw2G038430 Rw2G038440 Rw2G038450 Rw3G021460 Rw6G011250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	706
Acc36I	ACCTGC	1 cut(s)	706
AciI	CCGC	4 cut(s)	14, 319, 564, 901
AclWI	GGATC	1 cut(s)	185
AcoI	YGGCCR	2 cut(s)	828, 902
AcsI	RAATTY	1 cut(s)	368
AcuI	CTGAAG	2 cut(s)	494, 929
AcvI	CACGTG	1 cut(s)	748
AcyI	GRCGYC	1 cut(s)	198
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	3 cut(s)	241, 383, 573
AgsI	TTSAA	1 cut(s)	467
AjnI	CCWGG	1 cut(s)	78
AjuI	GAANNNNNNNTTGG	1 cut(s)	902
AleI	CACNNNNGTG	2 cut(s)	279, 808
Alw21I	GWGCWC	3 cut(s)	171, 747, 753
Alw26I	GTCTC	1 cut(s)	628
Alw44I	GTGCAC	2 cut(s)	743, 749
AlwI	GGATC	1 cut(s)	185
AlwNI	CAGNNNCTG	1 cut(s)	224
AoxI	GGCC	5 cut(s)	37, 58, 104, 828, 902
ApaLI	GTGCAC	2 cut(s)	743, 749
ApeKI	GCWGC	5 cut(s)	11, 17, 154, 336, 548
ApoI	RAATTY	1 cut(s)	368
AspLEI	GCGC	1 cut(s)	645
AsuHPI	GGTGA	1 cut(s)	687
AsuNHI	GCTAGC	1 cut(s)	577
BaeGI	GKGCMC	2 cut(s)	747, 753
BalI	TGGCCA	1 cut(s)	830
BanII	GRGCYC	1 cut(s)	171
BarI	GAAGNNNNNNTAC	2 cut(s)	107, 139
BbrPI	CACGTG	1 cut(s)	748
Bbv12I	GWGCWC	3 cut(s)	171, 747, 753
BbvCI	CCTCAGC	1 cut(s)	486
BbvI	GCAGC	5 cut(s)	23, 29, 141, 348, 560
BccI	CCATC	1 cut(s)	297
BceAI	ACGGC	2 cut(s)	485, 644
BciT130I	CCWGG	1 cut(s)	80
BcoDI	GTCTC	1 cut(s)	628
BfaI	CTAG	4 cut(s)	311, 578, 588, 897
BfuAI	ACCTGC	1 cut(s)	706
BisI	GCNGC	8 cut(s)	12, 15, 18, 155, 337, 549, 564, 902
BlpI	GCTNAGC	1 cut(s)	315
BlsI	GCNGC	8 cut(s)	13, 16, 19, 156, 338, 550, 565, 903
Bme1390I	CCNGG	1 cut(s)	80
BmrFI	CCNGG	1 cut(s)	80
BmsI	GCATC	2 cut(s)	784, 826
BmtI	GCTAGC	1 cut(s)	581
BpmI	CTGGAG	2 cut(s)	62, 185
Bpu10I	CCTNAGC	1 cut(s)	486
Bpu1102I	GCTNAGC	1 cut(s)	315
BsaAI	YACGTR	1 cut(s)	748
BsaHI	GRCGYC	1 cut(s)	198
BsaJI	CCNNGG	2 cut(s)	331, 831
BsaWI	WCCGGW	1 cut(s)	376
BsaXI	ACNNNNNCTCC	2 cut(s)	24, 54
Bsc4I	CCNNNNNNNGG	3 cut(s)	241, 383, 573
BseBI	CCWGG	1 cut(s)	80
BseDI	CCNNGG	2 cut(s)	331, 831
BseGI	GGATG	3 cut(s)	308, 362, 841
BseLI	CCNNNNNNNGG	3 cut(s)	241, 383, 573
BseMII	CTCAG	3 cut(s)	329, 500, 639
BseRI	GAGGAG	2 cut(s)	32, 65
BseSI	GKGCMC	2 cut(s)	747, 753
BseXI	GCAGC	5 cut(s)	23, 29, 141, 348, 560
BseYI	CCCAGC	1 cut(s)	429
BsgI	GTGCAG	1 cut(s)	684
Bsh1285I	CGRYCG	1 cut(s)	734
BshFI	GGCC	5 cut(s)	39, 60, 106, 830, 904
BsiEI	CGRYCG	1 cut(s)	734
BsiHKAI	GWGCWC	3 cut(s)	171, 747, 753
BsiSI	CCGG	1 cut(s)	377
BslFI	GGGAC	1 cut(s)	569
BslI	CCNNNNNNNGG	3 cut(s)	241, 383, 573
BsmAI	GTCTC	1 cut(s)	628
BsmFI	GGGAC	1 cut(s)	569
BsnI	GGCC	5 cut(s)	39, 60, 106, 830, 904
Bsp1286I	GDGCHC	3 cut(s)	171, 747, 753
Bsp1407I	TGTACA	1 cut(s)	213
Bsp143I	GATC	3 cut(s)	177, 204, 877
Bsp1720I	GCTNAGC	1 cut(s)	315
BspACI	CCGC	4 cut(s)	14, 319, 564, 901
BspANI	GGCC	5 cut(s)	39, 60, 106, 830, 904
BspCNI	CTCAG	3 cut(s)	328, 499, 638
BspMI	ACCTGC	1 cut(s)	706
BspOI	GCTAGC	1 cut(s)	581
BspPI	GGATC	1 cut(s)	185
BsrGI	TGTACA	1 cut(s)	213
BssECI	CCNNGG	2 cut(s)	331, 831
BssMI	GATC	3 cut(s)	177, 204, 877
BssNI	GRCGYC	1 cut(s)	198
BssT1I	CCWWGG	2 cut(s)	331, 831
Bst2UI	CCWGG	1 cut(s)	80
Bst4CI	ACNGT	3 cut(s)	676, 720, 735
Bst6I	CTCTTC	1 cut(s)	50
BstACI	GRCGYC	1 cut(s)	198
BstAUI	TGTACA	1 cut(s)	213
BstBAI	YACGTR	1 cut(s)	748
BstC8I	GCNNGC	3 cut(s)	147, 196, 579
BstDEI	CTNAG	5 cut(s)	315, 486, 612, 625, 713
BstF5I	GGATG	3 cut(s)	308, 362, 841
BstHHI	GCGC	1 cut(s)	645
BstKTI	GATC	3 cut(s)	180, 207, 880
BstMAI	GTCTC	1 cut(s)	628
BstMBI	GATC	3 cut(s)	177, 204, 877
BstMCI	CGRYCG	1 cut(s)	734
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 17, 151, 160, 336, 827, 836
BstNI	CCWGG	1 cut(s)	80
BstNSI	RCATGY	4 cut(s)	257, 643, 767, 857
BstSCI	CCNGG	1 cut(s)	78
BstSLI	GKGCMC	2 cut(s)	747, 753
BstV1I	GCAGC	5 cut(s)	23, 29, 141, 348, 560
BsuRI	GGCC	5 cut(s)	39, 60, 106, 830, 904
BtsCI	GGATG	3 cut(s)	308, 362, 841
BtsIMutI	CAGTG	1 cut(s)	905
BveI	ACCTGC	1 cut(s)	706
Cac8I	GCNNGC	3 cut(s)	147, 196, 579
CaiI	CAGNNNCTG	1 cut(s)	224
CfoI	GCGC	1 cut(s)	645
CseI	GACGC	1 cut(s)	187
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	4 cut(s)	254, 640, 764, 854
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	5 cut(s)	315, 486, 612, 625, 713
DpnI	GATC	3 cut(s)	179, 206, 879
DpnII	GATC	3 cut(s)	177, 204, 877
EaeI	YGGCCR	2 cut(s)	828, 902
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
Ecl136II	GAGCTC	1 cut(s)	169
Eco130I	CCWWGG	2 cut(s)	331, 831
Eco24I	GRGCYC	1 cut(s)	171
Eco53kI	GAGCTC	1 cut(s)	169
Eco57I	CTGAAG	2 cut(s)	494, 929
Eco72I	CACGTG	1 cut(s)	748
EcoICRI	GAGCTC	1 cut(s)	169
EcoRII	CCWGG	1 cut(s)	78
EcoT14I	CCWWGG	2 cut(s)	331, 831
EcoT22I	ATGCAT	1 cut(s)	841
EcoT38I	GRGCYC	1 cut(s)	171
ErhI	CCWWGG	2 cut(s)	331, 831
FaeI	CATG	4 cut(s)	257, 643, 767, 857
FaqI	GGGAC	1 cut(s)	569
FatI	CATG	4 cut(s)	253, 639, 763, 853
FauNDI	CATATG	1 cut(s)	266
Fnu4HI	GCNGC	8 cut(s)	12, 15, 18, 155, 337, 549, 564, 902
FokI	GGATG	3 cut(s)	315, 349, 848
FriOI	GRGCYC	1 cut(s)	171
Fsp4HI	GCNGC	8 cut(s)	12, 15, 18, 155, 337, 549, 564, 902
FspBI	CTAG	4 cut(s)	311, 578, 588, 897
GlaI	GCGC	1 cut(s)	644
GluI	GCNGC	8 cut(s)	12, 15, 18, 155, 337, 549, 564, 902
GsaI	CCCAGC	1 cut(s)	433
GsuI	CTGGAG	2 cut(s)	62, 185
HaeIII	GGCC	5 cut(s)	39, 60, 106, 830, 904
HapII	CCGG	1 cut(s)	377
HgaI	GACGC	1 cut(s)	187
HhaI	GCGC	1 cut(s)	645
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	4 cut(s)	257, 643, 767, 857
Hin6I	GCGC	1 cut(s)	643
HinP1I	GCGC	1 cut(s)	643
HindIII	AAGCTT	1 cut(s)	539
HinfI	GANTC	2 cut(s)	132, 601
HpaII	CCGG	1 cut(s)	377
HphI	GGTGA	1 cut(s)	687
Hpy166II	GTNNAC	5 cut(s)	214, 216, 695, 745, 751
Hpy188I	TCNGA	1 cut(s)	406
Hpy188III	TCNNGA	3 cut(s)	202, 757, 881
Hpy8I	GTNNAC	5 cut(s)	214, 216, 695, 745, 751
HpyAV	CCTTC	4 cut(s)	241, 469, 509, 766
HpyCH4III	ACNGT	3 cut(s)	676, 720, 735
HpyCH4IV	ACGT	1 cut(s)	747
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 17, 151, 160, 336, 827, 836
HpyF3I	CTNAG	5 cut(s)	315, 486, 612, 625, 713
HpySE526I	ACGT	1 cut(s)	747
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	4 cut(s)	257, 643, 767, 857
HspAI	GCGC	1 cut(s)	643
Kzo9I	GATC	3 cut(s)	177, 204, 877
LmnI	GCTCC	1 cut(s)	166
Lsp1109I	GCAGC	5 cut(s)	23, 29, 141, 348, 560
LweI	GCATC	2 cut(s)	784, 826
MaeI	CTAG	4 cut(s)	311, 578, 588, 897
MaeII	ACGT	1 cut(s)	747
MaeIII	GTNAC	2 cut(s)	635, 912
MalI	GATC	3 cut(s)	179, 206, 879
MboI	GATC	3 cut(s)	177, 204, 877
MboII	GAAGA	6 cut(s)	37, 40, 127, 141, 365, 367
MhlI	GDGCHC	3 cut(s)	171, 747, 753
MlsI	TGGCCA	1 cut(s)	830
MluCI	AATT	3 cut(s)	368, 884, 891
MluNI	TGGCCA	1 cut(s)	830
MmeI	TCCRAC	1 cut(s)	280
Mox20I	TGGCCA	1 cut(s)	830
Mph1103I	ATGCAT	1 cut(s)	841
MscI	TGGCCA	1 cut(s)	830
MseI	TTAA	1 cut(s)	239
MslI	CAYNNNNRTG	2 cut(s)	279, 808
Msp20I	TGGCCA	1 cut(s)	830
MspA1I	CMGCKG	3 cut(s)	14, 20, 319
MspI	CCGG	1 cut(s)	377
MspR9I	CCNGG	1 cut(s)	80
MvaI	CCWGG	1 cut(s)	80
MwoI	GCNNNNNNNGC	7 cut(s)	11, 17, 151, 160, 336, 827, 836
NdeI	CATATG	1 cut(s)	266
NdeII	GATC	3 cut(s)	177, 204, 877
NheI	GCTAGC	1 cut(s)	577
NlaIII	CATG	4 cut(s)	257, 643, 767, 857
NmeAIII	GCCGAG	1 cut(s)	15
NmuCI	GTSAC	2 cut(s)	635, 912
NsiI	ATGCAT	1 cut(s)	841
NspI	RCATGY	4 cut(s)	257, 643, 767, 857
OliI	CACNNNNGTG	2 cut(s)	279, 808
PaqCI	CACCTGC	1 cut(s)	706
PfeI	GAWTC	2 cut(s)	132, 601
PkrI	GCNGC	8 cut(s)	13, 16, 19, 156, 338, 550, 565, 903
PmaCI	CACGTG	1 cut(s)	748
PmlI	CACGTG	1 cut(s)	748
Ppu21I	YACGTR	1 cut(s)	748
Psp124BI	GAGCTC	1 cut(s)	171
Psp6I	CCWGG	1 cut(s)	78
PspCI	CACGTG	1 cut(s)	748
PspFI	CCCAGC	1 cut(s)	429
PspGI	CCWGG	1 cut(s)	78
PsrI	GAACNNNNNNTAC	2 cut(s)	511, 543
PstNI	CAGNNNCTG	1 cut(s)	224
PvuII	CAGCTG	1 cut(s)	20
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
RseI	CAYNNNNRTG	2 cut(s)	279, 808
SacI	GAGCTC	1 cut(s)	171
SaqAI	TTAA	1 cut(s)	239
SatI	GCNGC	8 cut(s)	12, 15, 18, 155, 337, 549, 564, 902
Sau3AI	GATC	3 cut(s)	177, 204, 877
ScrFI	CCNGG	1 cut(s)	80
SduI	GDGCHC	3 cut(s)	171, 747, 753
SfaNI	GCATC	2 cut(s)	784, 826
SmiMI	CAYNNNNRTG	2 cut(s)	279, 808
Sse9I	AATT	3 cut(s)	368, 884, 891
SsiI	CCGC	4 cut(s)	14, 319, 564, 901
SspMI	CTAG	4 cut(s)	311, 578, 588, 897
SstI	GAGCTC	1 cut(s)	171
StyD4I	CCNGG	1 cut(s)	78
StyI	CCWWGG	2 cut(s)	331, 831
TaaI	ACNGT	3 cut(s)	676, 720, 735
TaiI	ACGT	1 cut(s)	750
TaqI	TCGA	1 cut(s)	113
TasI	AATT	3 cut(s)	368, 884, 891
TatI	WGTACW	1 cut(s)	213
TauI	GCSGC	3 cut(s)	17, 566, 904
TfiI	GAWTC	2 cut(s)	132, 601
Tru1I	TTAA	1 cut(s)	239
Tru9I	TTAA	1 cut(s)	239
TscAI	CASTG	1 cut(s)	912
TseFI	GTSAC	2 cut(s)	635, 912
TseI	GCWGC	5 cut(s)	11, 17, 154, 336, 548
Tsp45I	GTSAC	2 cut(s)	635, 912
TspDTI	ATGAA	3 cut(s)	368, 456, 785
TspGWI	ACGGA	1 cut(s)	224
TspRI	CASTG	1 cut(s)	912
VneI	GTGCAC	2 cut(s)	743, 749
XapI	RAATTY	1 cut(s)	368
XceI	RCATGY	4 cut(s)	257, 643, 767, 857
XspI	CTAG	4 cut(s)	311, 578, 588, 897
Zsp2I	ATGCAT	1 cut(s)	841

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.