FvH4_6g23240

1-acyl-sn-glycerol-3-phosphate acyltransferase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
17165552 .. 17171319
5768 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g23240.t1

Sequence Viewer

Length: 1161 bp
ATGGCGATTGCAGCGGCAGCTGTCATCGTTCCACTCGGCCTCCTCTTCTTCCTCTCCGGCCTCTTCGTCAATCTCCTCCAGGCGATTTGCTTCATTTTTATTCGGCCCGTGTCGAAGAATGTACACAGAAGAATCAACCGAGTGGTAGCAGAGCTGCTGTGGCTGGAGCTTGTTTGGATCGTCGATTGGTGGGCAGGCGTCAAGGTCAAAGTGTACACAGACCCTGAAACCTTCCATTTAATGGGTAAAGAACATGCACTTGTCATATGCAATCATAAAAGTGATATTGATTGGCTTGTTGGATGGGTTCTAGCTCAGCGGTCAGGTTGCCTTGGCAGTACATTAGCTGTAATGAAAAAATCATCCAAATTTCTTCCGGTAATAGGGTGGTCAATGTGGTTTTCTGAATATCTCTTTTTGGAAAGAAGTTGGGCAAAAGATGAAAGCACAATAAAGACAGGTATTCAACGGCTGAAGGACTTCCCTCGACCCTTTTGGTTAGCTCTTTTTGTGGAAGGGACTCGCTTTACACAGGCAAAGCTTTTGGCTGCACAAGAATATGCAGCCTCAACAGGGCTACCTGTCCCTAGAAATGTTTTGATTCCTCGCACTAAGGGTTTCGTCTCAGCAGTAAGTCACATGCGCTCATTTGTACCAGCTATTTATGATATAACGGTGGCTATTCCTAAAAGTTCACCTGCACCTACAATGCTAAGACTTTTTGAGGGGCAACCTTCTGTGGTGCATGTGCACATCAAGAGGCATGTGATGAAGGACTTGCCTGAATCTGATGATGCTGTTGCACAATGGTGTAAAGATGCATTTGTGGCCAAGGATGCATTATTGGACAAACATGCAGTGGAGCAAACTTTCAGTGATCAAGAATTGCAAAGCACTGGCAGGCCATGGAAGTCACTTGTGGTTGTTACATCTTGGGCGTGTCTATTGGTTTTTGGGTCCATAAAGTTCCTCTACTGGTCTTCACTTCTATCCTCCAGGAAGGGCATTGCATTCTCATTATTGGGTTTGGGCATTGTTACCATTCTTATGCAGATCTTGATTCGGTTTTCTCAGTCAGAGCGTTCGACCCCAGCCAAGGTGGCTCCTACAAAGCATAATAATGGAGGACAGTCTTCTGGCAAACCAACCAAACAGCAATAG

Protein Analysis

387

Amino Acids

43.25

Weight (kDa)

9.72

Isoelectric Point (pI)

43.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyltransferase PF01553 83 - 228 3.7e-15 Acyltransferase
Acyltransf_C PF16076 239 - 312 1.8e-23 Acyltransferase C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 706
Acc36I ACCTGC 1 cut(s) 706
AccB7I CCANNNNNTGG 1 cut(s) 241
AciI CCGC 2 cut(s) 14, 319
AclWI GGATC 1 cut(s) 185
AcoI YGGCCR 1 cut(s) 828
AcsI RAATTY 1 cut(s) 368
AcuI CTGAAG 1 cut(s) 494
AcyI GRCGYC 1 cut(s) 198
AfaI GTAC 4 cut(s) 123, 215, 340, 654
AfiI CCNNNNNNNGG 4 cut(s) 241, 383, 573, 1096
AgsI TTSAA 1 cut(s) 467
AjnI CCWGG 2 cut(s) 78, 995
AleI CACNNNNGTG 1 cut(s) 808
AluBI AGCT 8 cut(s) 20, 154, 169, 314, 347, 503, 541, 659
AluI AGCT 8 cut(s) 20, 154, 169, 314, 347, 503, 541, 659
Alw21I GWGCWC 1 cut(s) 753
Alw26I GTCTC 1 cut(s) 628
Alw44I GTGCAC 1 cut(s) 749
AlwI GGATC 1 cut(s) 185
AlwNI CAGNNNCTG 1 cut(s) 224
AoxI GGCC 5 cut(s) 37, 58, 104, 828, 902
ApaLI GTGCAC 1 cut(s) 749
ApeKI GCWGC 5 cut(s) 11, 17, 154, 548, 563
ApoI RAATTY 1 cut(s) 368
Asp700I GAANNNNTTC 1 cut(s) 479
AspLEI GCGC 1 cut(s) 645
AspS9I GGNCC 2 cut(s) 105, 957
AsuHPI GGTGA 1 cut(s) 687
AvaII GGWCC 1 cut(s) 957
BaeGI GKGCMC 1 cut(s) 753
BalI TGGCCA 1 cut(s) 830
BbsI GAAGAC 2 cut(s) 972, 1125
Bbv12I GWGCWC 1 cut(s) 753
BbvI GCAGC 5 cut(s) 23, 29, 141, 535, 575
BccI CCATC 1 cut(s) 297
BceAI ACGGC 1 cut(s) 485
BciT130I CCWGG 2 cut(s) 80, 997
BclI TGATCA 1 cut(s) 877
BcoDI GTCTC 1 cut(s) 628
BfaI CTAG 2 cut(s) 311, 588
BfuAI ACCTGC 1 cut(s) 706
BglI GCCNNNNNGGC 1 cut(s) 1100
BglII AGATCT 1 cut(s) 1053
BisI GCNGC 6 cut(s) 12, 15, 18, 155, 549, 564
BlpI GCTNAGC 1 cut(s) 315
BlsI GCNGC 6 cut(s) 13, 16, 19, 156, 550, 565
Bme1390I CCNGG 2 cut(s) 80, 997
Bme18I GGWCC 1 cut(s) 957
BmgT120I GGNCC 2 cut(s) 105, 957
BmiI GGNNCC 2 cut(s) 958, 1104
BmrFI CCNGG 2 cut(s) 80, 997
BmsI GCATC 3 cut(s) 784, 808, 826
BpiI GAAGAC 2 cut(s) 972, 1125
BpmI CTGGAG 3 cut(s) 62, 185, 979
Bpu1102I GCTNAGC 1 cut(s) 315
BsaHI GRCGYC 1 cut(s) 198
BsaJI CCNNGG 4 cut(s) 331, 831, 905, 1095
BsaWI WCCGGW 1 cut(s) 376
BsaXI ACNNNNNCTCC 2 cut(s) 24, 54
Bsc4I CCNNNNNNNGG 4 cut(s) 241, 383, 573, 1096
Bse1I ACTGG 2 cut(s) 901, 980
Bse3DI GCAATG 1 cut(s) 1005
BseBI CCWGG 2 cut(s) 80, 997
BseDI CCNNGG 4 cut(s) 331, 831, 905, 1095
BseGI GGATG 3 cut(s) 308, 362, 841
BseLI CCNNNNNNNGG 4 cut(s) 241, 383, 573, 1096
BseMI GCAATG 1 cut(s) 1005
BseMII CTCAG 3 cut(s) 329, 639, 1085
BseNI ACTGG 2 cut(s) 901, 980
BseRI GAGGAG 2 cut(s) 32, 65
BseSI GKGCMC 1 cut(s) 753
BseXI GCAGC 5 cut(s) 23, 29, 141, 535, 575
BseYI CCCAGC 1 cut(s) 1090
BsgI GTGCAG 2 cut(s) 534, 684
BshFI GGCC 5 cut(s) 39, 60, 106, 830, 904
BsiHKAI GWGCWC 1 cut(s) 753
BsiSI CCGG 2 cut(s) 57, 377
BslFI GGGAC 2 cut(s) 532, 569
BslI CCNNNNNNNGG 4 cut(s) 241, 383, 573, 1096
BsmAI GTCTC 1 cut(s) 628
BsmBI CGTCTC 1 cut(s) 628
BsmFI GGGAC 2 cut(s) 532, 569
BsmI GAATGC 1 cut(s) 1010
BsnI GGCC 5 cut(s) 39, 60, 106, 830, 904
Bsp1286I GDGCHC 1 cut(s) 753
Bsp1407I TGTACA 2 cut(s) 121, 213
Bsp143I GATC 3 cut(s) 177, 877, 1053
Bsp1720I GCTNAGC 1 cut(s) 315
Bsp19I CCATGG 1 cut(s) 905
BspACI CCGC 2 cut(s) 14, 319
BspANI GGCC 5 cut(s) 39, 60, 106, 830, 904
BspCNI CTCAG 3 cut(s) 328, 638, 1084
BspLI GGNNCC 2 cut(s) 958, 1104
BspMI ACCTGC 1 cut(s) 706
BspPI GGATC 1 cut(s) 185
BsrDI GCAATG 1 cut(s) 1005
BsrGI TGTACA 2 cut(s) 121, 213
BsrI ACTGG 2 cut(s) 901, 980
BssECI CCNNGG 4 cut(s) 331, 831, 905, 1095
BssMI GATC 3 cut(s) 177, 877, 1053
BssNI GRCGYC 1 cut(s) 198
BssT1I CCWWGG 4 cut(s) 331, 831, 905, 1095
Bst2UI CCWGG 2 cut(s) 80, 997
Bst4CI ACNGT 2 cut(s) 676, 1131
Bst6I CTCTTC 2 cut(s) 50, 68
BstACI GRCGYC 1 cut(s) 198
BstAUI TGTACA 2 cut(s) 121, 213
BstC8I GCNNGC 2 cut(s) 196, 902
BstDEI CTNAG 5 cut(s) 315, 612, 625, 713, 1071
BstDSI CCRYGG 1 cut(s) 905
BstF5I GGATG 3 cut(s) 308, 362, 841
BstHHI GCGC 1 cut(s) 645
BstKTI GATC 3 cut(s) 180, 880, 1056
BstMAI GTCTC 1 cut(s) 628
BstMBI GATC 3 cut(s) 177, 877, 1053
BstMWI GCNNNNNNNGC 6 cut(s) 11, 17, 160, 827, 836, 1100
BstNI CCWGG 2 cut(s) 80, 997
BstNSI RCATGY 5 cut(s) 257, 643, 749, 767, 857
BstSCI CCNGG 2 cut(s) 78, 995
BstSLI GKGCMC 1 cut(s) 753
BstV1I GCAGC 5 cut(s) 23, 29, 141, 535, 575
BstV2I GAAGAC 2 cut(s) 972, 1125
BstX2I RGATCY 1 cut(s) 1053
BstYI RGATCY 1 cut(s) 1053
BsuRI GGCC 5 cut(s) 39, 60, 106, 830, 904
BtgI CCRYGG 1 cut(s) 905
BtsCI GGATG 3 cut(s) 308, 362, 841
BtsI GCAGTG 1 cut(s) 864
BtsIMutI CAGTG 3 cut(s) 864, 880, 894
BveI ACCTGC 1 cut(s) 706
Cac8I GCNNGC 2 cut(s) 196, 902
CaiI CAGNNNCTG 1 cut(s) 224
CfoI GCGC 1 cut(s) 645
Cfr13I GGNCC 2 cut(s) 105, 957
CseI GACGC 1 cut(s) 187
Csp6I GTAC 4 cut(s) 122, 214, 339, 653
CviAII CATG 6 cut(s) 254, 640, 746, 764, 854, 906
CviQI GTAC 4 cut(s) 122, 214, 339, 653
DdeI CTNAG 5 cut(s) 315, 612, 625, 713, 1071
DpnI GATC 3 cut(s) 179, 879, 1055
DpnII GATC 3 cut(s) 177, 877, 1053
EaeI YGGCCR 1 cut(s) 828
Eam1104I CTCTTC 2 cut(s) 50, 68
EarI CTCTTC 2 cut(s) 50, 68
Eco130I CCWWGG 4 cut(s) 331, 831, 905, 1095
Eco47I GGWCC 1 cut(s) 957
Eco57I CTGAAG 1 cut(s) 494
EcoRII CCWGG 2 cut(s) 78, 995
EcoT14I CCWWGG 4 cut(s) 331, 831, 905, 1095
EcoT22I ATGCAT 2 cut(s) 823, 841
ErhI CCWWGG 4 cut(s) 331, 831, 905, 1095
Esp3I CGTCTC 1 cut(s) 628
FaeI CATG 6 cut(s) 257, 643, 749, 767, 857, 909
FaqI GGGAC 2 cut(s) 532, 569
FatI CATG 6 cut(s) 253, 639, 745, 763, 853, 905
FauNDI CATATG 1 cut(s) 266
FbaI TGATCA 1 cut(s) 877
Fnu4HI GCNGC 6 cut(s) 12, 15, 18, 155, 549, 564
FokI GGATG 3 cut(s) 315, 349, 848
Fsp4HI GCNGC 6 cut(s) 12, 15, 18, 155, 549, 564
FspBI CTAG 2 cut(s) 311, 588
GlaI GCGC 1 cut(s) 644
GluI GCNGC 6 cut(s) 12, 15, 18, 155, 549, 564
GsaI CCCAGC 1 cut(s) 1094
GsuI CTGGAG 3 cut(s) 62, 185, 979
HaeIII GGCC 5 cut(s) 39, 60, 106, 830, 904
HapII CCGG 2 cut(s) 57, 377
HgaI GACGC 1 cut(s) 187
HhaI GCGC 1 cut(s) 645
Hin1I GRCGYC 1 cut(s) 198
Hin1II CATG 6 cut(s) 257, 643, 749, 767, 857, 909
Hin6I GCGC 1 cut(s) 643
HinP1I GCGC 1 cut(s) 643
HindIII AAGCTT 1 cut(s) 539
HinfI GANTC 5 cut(s) 132, 520, 601, 785, 1060
HpaII CCGG 2 cut(s) 57, 377
HphI GGTGA 1 cut(s) 687
Hpy166II GTNNAC 5 cut(s) 124, 214, 216, 695, 751
Hpy188I TCNGA 3 cut(s) 406, 790, 1078
Hpy188III TCNNGA 3 cut(s) 757, 881, 1057
Hpy8I GTNNAC 5 cut(s) 124, 214, 216, 695, 751
Hpy99I CGWCG 1 cut(s) 185
HpyAV CCTTC 6 cut(s) 241, 469, 509, 744, 766, 994
HpyCH4III ACNGT 2 cut(s) 676, 1131
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 17, 160, 827, 836, 1100
HpyF3I CTNAG 5 cut(s) 315, 612, 625, 713, 1071
Hsp92I GRCGYC 1 cut(s) 198
Hsp92II CATG 6 cut(s) 257, 643, 749, 767, 857, 909
HspAI GCGC 1 cut(s) 643
Ksp22I TGATCA 1 cut(s) 877
Kzo9I GATC 3 cut(s) 177, 877, 1053
LmnI GCTCC 3 cut(s) 166, 862, 1108
Lsp1109I GCAGC 5 cut(s) 23, 29, 141, 535, 575
LweI GCATC 3 cut(s) 784, 808, 826
MaeI CTAG 2 cut(s) 311, 588
MaeIII GTNAC 4 cut(s) 635, 912, 925, 1036
MalI GATC 3 cut(s) 179, 879, 1055
MboI GATC 3 cut(s) 177, 877, 1053
MboII GAAGA 8 cut(s) 37, 40, 55, 127, 141, 365, 972, 1125
MflI RGATCY 1 cut(s) 1053
MhlI GDGCHC 1 cut(s) 753
MlsI TGGCCA 1 cut(s) 830
MluCI AATT 2 cut(s) 368, 884
MluNI TGGCCA 1 cut(s) 830
MlyI GAGTC 1 cut(s) 514
MmeI TCCRAC 1 cut(s) 280
Mox20I TGGCCA 1 cut(s) 830
Mph1103I ATGCAT 2 cut(s) 823, 841
MroXI GAANNNNTTC 1 cut(s) 479
MscI TGGCCA 1 cut(s) 830
MseI TTAA 1 cut(s) 239
MslI CAYNNNNRTG 4 cut(s) 279, 808, 1046, 1119
Msp20I TGGCCA 1 cut(s) 830
MspA1I CMGCKG 3 cut(s) 14, 20, 319
MspI CCGG 2 cut(s) 57, 377
MspR9I CCNGG 2 cut(s) 80, 997
Mva1269I GAATGC 1 cut(s) 1010
MvaI CCWGG 2 cut(s) 80, 997
MwoI GCNNNNNNNGC 6 cut(s) 11, 17, 160, 827, 836, 1100
NcoI CCATGG 1 cut(s) 905
NdeI CATATG 1 cut(s) 266
NdeII GATC 3 cut(s) 177, 877, 1053
NlaIII CATG 6 cut(s) 257, 643, 749, 767, 857, 909
NlaIV GGNNCC 2 cut(s) 958, 1104
NmeAIII GCCGAG 1 cut(s) 15
NmuCI GTSAC 2 cut(s) 635, 912
NsiI ATGCAT 2 cut(s) 823, 841
NspI RCATGY 5 cut(s) 257, 643, 749, 767, 857
OliI CACNNNNGTG 1 cut(s) 808
PaqCI CACCTGC 1 cut(s) 706
PctI GAATGC 1 cut(s) 1010
PdmI GAANNNNTTC 1 cut(s) 479
PfeI GAWTC 4 cut(s) 132, 601, 785, 1060
PflMI CCANNNNNTGG 1 cut(s) 241
PfoI TCCNGGA 1 cut(s) 995
PkrI GCNGC 6 cut(s) 13, 16, 19, 156, 550, 565
PleI GAGTC 1 cut(s) 514
PpsI GAGTC 1 cut(s) 514
Psp6I CCWGG 2 cut(s) 78, 995
PspFI CCCAGC 1 cut(s) 1090
PspGI CCWGG 2 cut(s) 78, 995
PspN4I GGNNCC 2 cut(s) 958, 1104
PspPI GGNCC 2 cut(s) 105, 957
PstNI CAGNNNCTG 1 cut(s) 224
PsuI RGATCY 1 cut(s) 1053
PvuII CAGCTG 1 cut(s) 20
RsaI GTAC 4 cut(s) 123, 215, 340, 654
RsaNI GTAC 4 cut(s) 122, 214, 339, 653
RseI CAYNNNNRTG 4 cut(s) 279, 808, 1046, 1119
SaqAI TTAA 1 cut(s) 239
SatI GCNGC 6 cut(s) 12, 15, 18, 155, 549, 564
Sau3AI GATC 3 cut(s) 177, 877, 1053
Sau96I GGNCC 2 cut(s) 105, 957
SchI GAGTC 1 cut(s) 514
ScrFI CCNGG 2 cut(s) 80, 997
SduI GDGCHC 1 cut(s) 753
SfaNI GCATC 3 cut(s) 784, 808, 826
SinI GGWCC 1 cut(s) 957
SmiMI CAYNNNNRTG 4 cut(s) 279, 808, 1046, 1119
Sse9I AATT 2 cut(s) 368, 884
SsiI CCGC 2 cut(s) 14, 319
SspMI CTAG 2 cut(s) 311, 588
StyD4I CCNGG 2 cut(s) 78, 995
StyI CCWWGG 4 cut(s) 331, 831, 905, 1095
TaaI ACNGT 2 cut(s) 676, 1131
TaqI TCGA 4 cut(s) 113, 183, 487, 1085
TasI AATT 2 cut(s) 368, 884
TatI WGTACW 3 cut(s) 121, 213, 338
TauI GCSGC 1 cut(s) 17
TfiI GAWTC 4 cut(s) 132, 601, 785, 1060
Tru1I TTAA 1 cut(s) 239
Tru9I TTAA 1 cut(s) 239
TscAI CASTG 3 cut(s) 864, 880, 901
TseFI GTSAC 2 cut(s) 635, 912
TseI GCWGC 5 cut(s) 11, 17, 154, 548, 563
Tsp45I GTSAC 2 cut(s) 635, 912
TspDTI ATGAA 4 cut(s) 82, 368, 456, 785
TspRI CASTG 3 cut(s) 864, 880, 901
Van91I CCANNNNNTGG 1 cut(s) 241
VneI GTGCAC 1 cut(s) 749
VpaK11BI GGWCC 1 cut(s) 957
XapI RAATTY 1 cut(s) 368
XceI RCATGY 5 cut(s) 257, 643, 749, 767, 857
XmnI GAANNNNTTC 1 cut(s) 479
XspI CTAG 2 cut(s) 311, 588
Zsp2I ATGCAT 2 cut(s) 823, 841
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.