RLG00000020404

1-acyl-sn-glycerol-3-phosphate acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001488
Physical Location & Seq
Forward (+)
64684303 .. 64689540
5238 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020404

Sequence Viewer

Length: 1014 bp
ATGGCGATTGGCACTCGGAATCCTCTTTTCAGTGGTCGTGGCCCTCCATCCGCTAATCCTTCATCTCATTCCGGTGGTGCTGCTCTGCGTCTCAGGCCTCTTTGCCAATCTGGTTCAGGCGTTTTGCTTTGCCTCATTGAGTGGTGGGCTGGCGTTAAGATCCCAGTGTGCACAGAGCAGGAAACCAGTCATTTAAAGGGTAAAGAACATGAACTTGTCATATCCAATGCTAGAAGGGATGCTGATCATCTTGTTGAACTGGTTCTCGCTCAGTGGTCAGGTTGCCTTGGCAGTTTATTTGCTTTAATAAAGACGTCAACATGGTACATTCTGGCCACAGGGTGGTCAATGTGGTTTTCTGAATATGTTTTTTCAAAAGAATCAGATCTAAATGACTTACCTCAGCCCTTTTGGTTATCTGTTGTCCTAGAAAGAACTGGTTTTACTCGAGGAGATCTTCTAGCTGTGCAGAGGCTTCCTGTCCCTAGCAAGGTTTTGATTCTTGATACTATGGATTTAGTTTATCCTGTAAGATGTGCGCATTCTGTTGTTCCAGCCATTTATGTTATAACAGTGGCTATTCCCAAAACTTCACCTCTACCTACACTTGAAAGTGTAATTAAAGAGGGACCTTCTGTGGTGCATGTGTACATCAAGCGGCTTGCGACGCCTGAAACTGATGATGCTGTTGAGGAGTGGTGCGCAAAAATACTTGCAGCCAAGATGATTTCAATACTGTGTTCCATGGGTGCATTGTTGGACGAACATATAGCAGACCAAGTTGTCATATCTCTAATTGCGTTGGGGGCTCTAAAGTTCAACTTTGTCTGCTGTTCCACCCTGCTTGTATTGAGTGCTGCCCTCTTTACTGGCCGGATGCTTACTCTGTTCGGCTGTGGAGTGCTTTCGCTGTTGCAGTGTTTCATGGAAGCCGCTATAGCAAACATTATTTGGTCAGAGCACCTCAAGCCCATCTGTGGCTGGTTGATTAATATTCTTGGAGACTTGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko00564 ko01100 ko01110 ko04072 map00561 map00564 map01100 map01110 map04072
Pfam Domains
Protein Families
Acyltransf_C Acyltransferase

Protein Analysis

338

Amino Acids

36.77

Weight (kDa)

6.07

Isoelectric Point (pI)

36.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 569
AasI GACNNNNNNGTC 1 cut(s) 782
AatII GACGTC 1 cut(s) 317
Acc16I TGCGCA 2 cut(s) 540, 703
AccB7I CCANNNNNTGG 1 cut(s) 342
AciI CCGC 3 cut(s) 51, 658, 933
AclWI GGATC 1 cut(s) 154
AcoI YGGCCR 2 cut(s) 333, 871
AcyI GRCGYC 2 cut(s) 314, 668
AdeI CACNNNGTG 1 cut(s) 342
AfaI GTAC 2 cut(s) 326, 650
AfiI CCNNNNNNNGG 3 cut(s) 342, 490, 977
AgsI TTSAA 5 cut(s) 257, 375, 611, 732, 820
AluBI AGCT 1 cut(s) 464
AluI AGCT 1 cut(s) 464
Alw21I GWGCWC 2 cut(s) 173, 963
Alw26I GTCTC 2 cut(s) 95, 996
Alw44I GTGCAC 1 cut(s) 169
AlwI GGATC 1 cut(s) 154
Ama87I CYCGRG 1 cut(s) 447
AoxI GGCC 4 cut(s) 40, 95, 333, 871
ApaLI GTGCAC 1 cut(s) 169
ApeKI GCWGC 3 cut(s) 80, 716, 857
AseI ATTAAT 1 cut(s) 990
Asp700I GAANNNNTTC 1 cut(s) 261
AspLEI GCGC 2 cut(s) 541, 704
AspS9I GGNCC 2 cut(s) 41, 629
AsuHPI GGTGA 1 cut(s) 585
AvaI CYCGRG 1 cut(s) 447
AvaII GGWCC 1 cut(s) 629
BaeGI GKGCMC 1 cut(s) 173
BalI TGGCCA 1 cut(s) 335
BanII GRGCYC 1 cut(s) 811
Bbv12I GWGCWC 2 cut(s) 173, 963
BbvCI CCTCAGC 1 cut(s) 402
BbvI GCAGC 3 cut(s) 67, 728, 844
BccI CCATC 2 cut(s) 55, 980
BclI TGATCA 1 cut(s) 244
BcoDI GTCTC 2 cut(s) 95, 996
BfaI CTAG 4 cut(s) 231, 428, 461, 486
BfmI CTRYAG 1 cut(s) 936
BglII AGATCT 2 cut(s) 385, 454
BisI GCNGC 5 cut(s) 81, 659, 717, 858, 933
BlsI GCNGC 5 cut(s) 82, 660, 718, 859, 934
Bme18I GGWCC 1 cut(s) 629
BmeT110I CYCGRG 1 cut(s) 447
BmgT120I GGNCC 2 cut(s) 41, 629
BmiI GGNNCC 1 cut(s) 630
BmrI ACTGGG 1 cut(s) 158
BmsI GCATC 3 cut(s) 229, 673, 867
BmuI ACTGGG 1 cut(s) 158
Bpu10I CCTNAGC 1 cut(s) 402
BpuEI CTTGAG 1 cut(s) 950
BsaBI GATNNNNATC 1 cut(s) 243
BsaHI GRCGYC 2 cut(s) 314, 668
BsaJI CCNNGG 2 cut(s) 286, 744
BsaWI WCCGGW 1 cut(s) 71
Bsc4I CCNNNNNNNGG 3 cut(s) 342, 490, 977
Bse1I ACTGG 5 cut(s) 164, 186, 264, 442, 874
Bse8I GATNNNNATC 1 cut(s) 243
BseDI CCNNGG 2 cut(s) 286, 744
BseGI GGATG 3 cut(s) 47, 244, 882
BseJI GATNNNNATC 1 cut(s) 243
BseLI CCNNNNNNNGG 3 cut(s) 342, 490, 977
BseMII CTCAG 3 cut(s) 106, 284, 416
BseNI ACTGG 5 cut(s) 164, 186, 264, 442, 874
BseRI GAGGAG 2 cut(s) 465, 707
BseSI GKGCMC 1 cut(s) 173
BseXI GCAGC 3 cut(s) 67, 728, 844
BsgI GTGCAG 1 cut(s) 488
BshFI GGCC 4 cut(s) 42, 97, 335, 873
BsiHKAI GWGCWC 2 cut(s) 173, 963
BsiHKCI CYCGRG 1 cut(s) 447
BsiSI CCGG 2 cut(s) 72, 874
BslFI GGGAC 2 cut(s) 467, 642
BslI CCNNNNNNNGG 3 cut(s) 342, 490, 977
BsmAI GTCTC 2 cut(s) 95, 996
BsmBI CGTCTC 1 cut(s) 95
BsmFI GGGAC 2 cut(s) 467, 642
BsmI GAATGC 1 cut(s) 541
BsnI GGCC 4 cut(s) 42, 97, 335, 873
BsoBI CYCGRG 1 cut(s) 447
Bsp1286I GDGCHC 3 cut(s) 173, 811, 963
Bsp1407I TGTACA 1 cut(s) 648
Bsp143I GATC 4 cut(s) 159, 244, 385, 454
Bsp19I CCATGG 1 cut(s) 744
BspACI CCGC 3 cut(s) 51, 658, 933
BspANI GGCC 4 cut(s) 42, 97, 335, 873
BspCNI CTCAG 3 cut(s) 105, 283, 415
BspLI GGNNCC 1 cut(s) 630
BspPI GGATC 1 cut(s) 154
BsrGI TGTACA 1 cut(s) 648
BsrI ACTGG 5 cut(s) 164, 186, 264, 442, 874
BssECI CCNNGG 2 cut(s) 286, 744
BssMI GATC 4 cut(s) 159, 244, 385, 454
BssNI GRCGYC 2 cut(s) 314, 668
BssT1I CCWWGG 2 cut(s) 286, 744
Bst4CI ACNGT 2 cut(s) 574, 738
BstACI GRCGYC 2 cut(s) 314, 668
BstAUI TGTACA 1 cut(s) 648
BstC8I GCNNGC 2 cut(s) 151, 663
BstDEI CTNAG 3 cut(s) 92, 270, 402
BstDSI CCRYGG 1 cut(s) 744
BstF5I GGATG 3 cut(s) 47, 244, 882
BstHHI GCGC 2 cut(s) 541, 704
BstKTI GATC 4 cut(s) 162, 247, 388, 457
BstMAI GTCTC 2 cut(s) 95, 996
BstMBI GATC 4 cut(s) 159, 244, 385, 454
BstMWI GCNNNNNNNGC 5 cut(s) 94, 667, 806, 938, 967
BstNSI RCATGY 1 cut(s) 647
BstSFI CTRYAG 1 cut(s) 936
BstSLI GKGCMC 1 cut(s) 173
BstV1I GCAGC 3 cut(s) 67, 728, 844
BstX2I RGATCY 3 cut(s) 159, 385, 454
BstYI RGATCY 3 cut(s) 159, 385, 454
BsuRI GGCC 4 cut(s) 42, 97, 335, 873
BtgI CCRYGG 1 cut(s) 744
BtsCI GGATG 3 cut(s) 47, 244, 882
BtsI GCAGTG 1 cut(s) 923
BtsIMutI CAGTG 5 cut(s) 37, 171, 278, 579, 923
Cac8I GCNNGC 2 cut(s) 151, 663
CfoI GCGC 2 cut(s) 541, 704
Cfr13I GGNCC 2 cut(s) 41, 629
CseI GACGC 2 cut(s) 77, 676
Csp6I GTAC 2 cut(s) 325, 649
CspCI CAANNNNNGTGG 2 cut(s) 826, 861
CviAII CATG 5 cut(s) 209, 321, 644, 745, 925
CviQI GTAC 2 cut(s) 325, 649
DdeI CTNAG 3 cut(s) 92, 270, 402
DpnI GATC 4 cut(s) 161, 246, 387, 456
DpnII GATC 4 cut(s) 159, 244, 385, 454
DraI TTTAAA 1 cut(s) 195
DraIII CACNNNGTG 1 cut(s) 342
DrdI GACNNNNNNGTC 1 cut(s) 782
DseDI GACNNNNNNGTC 1 cut(s) 782
EaeI YGGCCR 2 cut(s) 333, 871
Eco130I CCWWGG 2 cut(s) 286, 744
Eco147I AGGCCT 1 cut(s) 97
Eco24I GRGCYC 1 cut(s) 811
Eco47I GGWCC 1 cut(s) 629
Eco88I CYCGRG 1 cut(s) 447
EcoO109I RGGNCCY 1 cut(s) 629
EcoT14I CCWWGG 2 cut(s) 286, 744
EcoT38I GRGCYC 1 cut(s) 811
ErhI CCWWGG 2 cut(s) 286, 744
Esp3I CGTCTC 1 cut(s) 95
FaeI CATG 5 cut(s) 212, 324, 647, 748, 928
FalI AAGNNNNNCTT 2 cut(s) 806, 838
FaqI GGGAC 2 cut(s) 467, 642
FatI CATG 5 cut(s) 208, 320, 643, 744, 924
FbaI TGATCA 1 cut(s) 244
Fnu4HI GCNGC 5 cut(s) 81, 659, 717, 858, 933
FokI GGATG 3 cut(s) 34, 251, 889
FriOI GRGCYC 1 cut(s) 811
Fsp4HI GCNGC 5 cut(s) 81, 659, 717, 858, 933
FspAI RTGCGCAY 1 cut(s) 540
FspBI CTAG 4 cut(s) 231, 428, 461, 486
FspI TGCGCA 2 cut(s) 540, 703
GlaI GCGC 2 cut(s) 540, 703
GluI GCNGC 5 cut(s) 81, 659, 717, 858, 933
HaeIII GGCC 4 cut(s) 42, 97, 335, 873
HapII CCGG 2 cut(s) 72, 874
HgaI GACGC 2 cut(s) 77, 676
HhaI GCGC 2 cut(s) 541, 704
Hin1I GRCGYC 2 cut(s) 314, 668
Hin1II CATG 5 cut(s) 212, 324, 647, 748, 928
Hin6I GCGC 2 cut(s) 539, 702
HinP1I GCGC 2 cut(s) 539, 702
HincII GTYRAC 1 cut(s) 318
HindII GTYRAC 1 cut(s) 318
HinfI GANTC 3 cut(s) 19, 380, 499
HpaII CCGG 2 cut(s) 72, 874
HphI GGTGA 1 cut(s) 585
Hpy166II GTNNAC 3 cut(s) 171, 318, 649
Hpy188I TCNGA 4 cut(s) 18, 361, 385, 958
Hpy188III TCNNGA 1 cut(s) 503
Hpy8I GTNNAC 3 cut(s) 171, 318, 649
Hpy99I CGWCG 1 cut(s) 670
HpyAV CCTTC 3 cut(s) 69, 228, 642
HpyCH4III ACNGT 2 cut(s) 574, 738
HpyCH4IV ACGT 1 cut(s) 314
HpyCH4V TGCA 6 cut(s) 171, 469, 643, 716, 752, 916
HpyF10VI GCNNNNNNNGC 5 cut(s) 94, 667, 806, 938, 967
HpyF3I CTNAG 3 cut(s) 92, 270, 402
HpySE526I ACGT 1 cut(s) 314
Hsp92I GRCGYC 2 cut(s) 314, 668
Hsp92II CATG 5 cut(s) 212, 324, 647, 748, 928
HspAI GCGC 2 cut(s) 539, 702
Ksp22I TGATCA 1 cut(s) 244
Kzo9I GATC 4 cut(s) 159, 244, 385, 454
Lsp1109I GCAGC 3 cut(s) 67, 728, 844
LweI GCATC 3 cut(s) 229, 673, 867
MaeI CTAG 4 cut(s) 231, 428, 461, 486
MaeII ACGT 1 cut(s) 314
MalI GATC 4 cut(s) 161, 246, 387, 456
MboI GATC 4 cut(s) 159, 244, 385, 454
MboII GAAGA 1 cut(s) 449
MflI RGATCY 3 cut(s) 159, 385, 454
MhlI GDGCHC 3 cut(s) 173, 811, 963
MlsI TGGCCA 1 cut(s) 335
MluCI AATT 2 cut(s) 618, 795
MluNI TGGCCA 1 cut(s) 335
MmeI TCCRAC 1 cut(s) 738
Mox20I TGGCCA 1 cut(s) 335
MroXI GAANNNNTTC 1 cut(s) 261
MscI TGGCCA 1 cut(s) 335
MseI TTAA 5 cut(s) 156, 194, 305, 621, 990
MslI CAYNNNNRTG 1 cut(s) 72
Msp20I TGGCCA 1 cut(s) 335
MspI CCGG 2 cut(s) 72, 874
Mva1269I GAATGC 1 cut(s) 541
MwoI GCNNNNNNNGC 5 cut(s) 94, 667, 806, 938, 967
NcoI CCATGG 1 cut(s) 744
NdeII GATC 4 cut(s) 159, 244, 385, 454
NlaIII CATG 5 cut(s) 212, 324, 647, 748, 928
NlaIV GGNNCC 1 cut(s) 630
NsbI TGCGCA 2 cut(s) 540, 703
NspI RCATGY 1 cut(s) 647
PaeR7I CTCGAG 1 cut(s) 447
PceI AGGCCT 1 cut(s) 97
PctI GAATGC 1 cut(s) 541
PdmI GAANNNNTTC 1 cut(s) 261
PfeI GAWTC 3 cut(s) 19, 380, 499
PflMI CCANNNNNTGG 1 cut(s) 342
PkrI GCNGC 5 cut(s) 82, 660, 718, 859, 934
PpuMI RGGWCCY 1 cut(s) 629
PshBI ATTAAT 1 cut(s) 990
PsiI TTATAA 1 cut(s) 569
Psp5II RGGWCCY 1 cut(s) 629
PspN4I GGNNCC 1 cut(s) 630
PspPI GGNCC 2 cut(s) 41, 629
PspPPI RGGWCCY 1 cut(s) 629
PspXI VCTCGAGB 1 cut(s) 447
PsrI GAACNNNNNNTAC 2 cut(s) 427, 459
PsuI RGATCY 3 cut(s) 159, 385, 454
RsaI GTAC 2 cut(s) 326, 650
RsaNI GTAC 2 cut(s) 325, 649
RseI CAYNNNNRTG 1 cut(s) 72
SaqAI TTAA 5 cut(s) 156, 194, 305, 621, 990
SatI GCNGC 5 cut(s) 81, 659, 717, 858, 933
Sau3AI GATC 4 cut(s) 159, 244, 385, 454
Sau96I GGNCC 2 cut(s) 41, 629
SduI GDGCHC 3 cut(s) 173, 811, 963
SetI ASST 9 cut(s) 283, 317, 403, 466, 495, 598, 604, 634, 966
SfaNI GCATC 3 cut(s) 229, 673, 867
SfcI CTRYAG 1 cut(s) 936
Sfr274I CTCGAG 1 cut(s) 447
SinI GGWCC 1 cut(s) 629
SlaI CTCGAG 1 cut(s) 447
SmiMI CAYNNNNRTG 1 cut(s) 72
SmlI CTYRAG 2 cut(s) 447, 965
SmoI CTYRAG 2 cut(s) 447, 965
Sse9I AATT 2 cut(s) 618, 795
SseBI AGGCCT 1 cut(s) 97
SsiI CCGC 3 cut(s) 51, 658, 933
SspI AATATT 1 cut(s) 994
SspMI CTAG 4 cut(s) 231, 428, 461, 486
StuI AGGCCT 1 cut(s) 97
StyI CCWWGG 2 cut(s) 286, 744
TaaI ACNGT 2 cut(s) 574, 738
TaiI ACGT 1 cut(s) 317
TaqI TCGA 1 cut(s) 448
TasI AATT 2 cut(s) 618, 795
TatI WGTACW 1 cut(s) 648
TauI GCSGC 2 cut(s) 661, 935
TfiI GAWTC 3 cut(s) 19, 380, 499
Tru1I TTAA 5 cut(s) 156, 194, 305, 621, 990
Tru9I TTAA 5 cut(s) 156, 194, 305, 621, 990
TscAI CASTG 5 cut(s) 37, 171, 278, 579, 923
TseI GCWGC 3 cut(s) 80, 716, 857
TspDTI ATGAA 3 cut(s) 51, 225, 913
TspRI CASTG 5 cut(s) 37, 171, 278, 579, 923
Van91I CCANNNNNTGG 1 cut(s) 342
VneI GTGCAC 1 cut(s) 169
VpaK11BI GGWCC 1 cut(s) 629
VspI ATTAAT 1 cut(s) 990
XceI RCATGY 1 cut(s) 647
XhoI CTCGAG 1 cut(s) 447
XmnI GAANNNNTTC 1 cut(s) 261
XspI CTAG 4 cut(s) 231, 428, 461, 486
ZraI GACGTC 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.