RchiOBHm_Chr2g0149441

1-acyl-sn-glycerol-3-phosphate acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001488
Physical Location & Seq
Forward (+)
67293919 .. 67295937
2019 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51884

Sequence Viewer

Length: 447 bp
ATGCTATGGAAACATTTGCAGTCAGATCTAAAGGACTTCCCTCAGCCCTTTTGGTTATCTGTTGTCCTTGAAAGAACTGGTTTTACTCATGGAGAGCTTGTAGCTGCACAGAGGCTTCCTGTCCCTAGCAAGTTTTTTATAAGACGTGTGTACTCTGTTGTTCCAGCCATTTATGTTATAACAGTGGCTATTCCTAAAACTTCACCTCCAACTACAGTTGAAAGTGTAATTAAAGGGGGACCTTCTGTGGTGCATGCGTACGTCAAGCGGCATGCGACTAAAAAATGGCCTGAAACTGAAGATGCTGTTGAAAAGTGGTGCACAGAAATACTTGCAGCCAAGGGTGCATTATTGGATGAACATATAGCAGAACAAACTTTTGGCAATAAAGGATTGCAAGCTATTGGTCGGCCACTAAAGTGTTTATTGGTAGGAGACTTGTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko00564 ko01100 ko01110 ko04072 map00561 map00564 map01100 map01110 map04072
Pfam Domains
Protein Families
Acyltransf_C Acyltransferase

Protein Analysis

148

Amino Acids

16.47

Weight (kDa)

9.03

Isoelectric Point (pI)

58.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyltransf_C PF16076 76 - 144 2.7e-14 Acyltransferase C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 140, 179
AciI CCGC 1 cut(s) 268
AcoI YGGCCR 1 cut(s) 410
AcuI CTGAAG 1 cut(s) 318
AfaI GTAC 2 cut(s) 152, 260
AflIII ACRYGT 1 cut(s) 145
AgsI TTSAA 3 cut(s) 71, 221, 311
AjiI CACGTC 1 cut(s) 146
AjuI GAANNNNNNNTTGG 2 cut(s) 363, 395
AleI CACNNNNGTG 1 cut(s) 418
AluBI AGCT 3 cut(s) 97, 104, 401
AluI AGCT 3 cut(s) 97, 104, 401
Alw21I GWGCWC 1 cut(s) 323
Alw26I GTCTC 1 cut(s) 429
Alw44I GTGCAC 1 cut(s) 319
AoxI GGCC 2 cut(s) 287, 410
ApaLI GTGCAC 1 cut(s) 319
ApeKI GCWGC 2 cut(s) 104, 335
AspS9I GGNCC 1 cut(s) 239
AsuHPI GGTGA 1 cut(s) 195
AvaII GGWCC 1 cut(s) 239
BaeGI GKGCMC 1 cut(s) 323
Bbv12I GWGCWC 1 cut(s) 323
BbvCI CCTCAGC 1 cut(s) 42
BbvI GCAGC 2 cut(s) 91, 347
BcoDI GTCTC 1 cut(s) 429
BfaI CTAG 1 cut(s) 126
BfmI CTRYAG 1 cut(s) 213
BglII AGATCT 1 cut(s) 25
BisI GCNGC 3 cut(s) 105, 269, 336
BlsI GCNGC 3 cut(s) 106, 270, 337
Bme18I GGWCC 1 cut(s) 239
BmgBI CACGTC 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 239
BmiI GGNNCC 1 cut(s) 240
BmsI GCATC 1 cut(s) 292
Bpu10I CCTNAGC 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 339
BsaXI ACNNNNNCTCC 4 cut(s) 84, 114, 190, 220
Bse1I ACTGG 1 cut(s) 82
BseDI CCNNGG 1 cut(s) 339
BseGI GGATG 1 cut(s) 361
BseMII CTCAG 1 cut(s) 56
BseNI ACTGG 1 cut(s) 82
BseSI GKGCMC 1 cut(s) 323
BseXI GCAGC 2 cut(s) 91, 347
BsgI GTGCAG 1 cut(s) 90
BshFI GGCC 2 cut(s) 289, 412
BsiHKAI GWGCWC 1 cut(s) 323
BsiWI CGTACG 1 cut(s) 258
BslFI GGGAC 2 cut(s) 107, 252
BsmAI GTCTC 1 cut(s) 429
BsmFI GGGAC 2 cut(s) 107, 252
BsnI GGCC 2 cut(s) 289, 412
Bsp1286I GDGCHC 1 cut(s) 323
Bsp143I GATC 1 cut(s) 25
BspACI CCGC 1 cut(s) 268
BspANI GGCC 2 cut(s) 289, 412
BspCNI CTCAG 1 cut(s) 55
BspLI GGNNCC 1 cut(s) 240
BsrI ACTGG 1 cut(s) 82
BssECI CCNNGG 1 cut(s) 339
BssMI GATC 1 cut(s) 25
BssT1I CCWWGG 1 cut(s) 339
Bst4CI ACNGT 2 cut(s) 184, 217
BstC8I GCNNGC 3 cut(s) 255, 273, 399
BstDEI CTNAG 1 cut(s) 42
BstF5I GGATG 1 cut(s) 361
BstKTI GATC 1 cut(s) 28
BstMAI GTCTC 1 cut(s) 429
BstMBI GATC 1 cut(s) 25
BstMWI GCNNNNNNNGC 1 cut(s) 344
BstNSI RCATGY 2 cut(s) 257, 275
BstSFI CTRYAG 1 cut(s) 213
BstSLI GKGCMC 1 cut(s) 323
BstV1I GCAGC 2 cut(s) 91, 347
BstX2I RGATCY 1 cut(s) 25
BstYI RGATCY 1 cut(s) 25
BsuRI GGCC 2 cut(s) 289, 412
BtrI CACGTC 1 cut(s) 146
BtsCI GGATG 1 cut(s) 361
BtsIMutI CAGTG 1 cut(s) 189
Cac8I GCNNGC 3 cut(s) 255, 273, 399
Cfr13I GGNCC 1 cut(s) 239
Csp6I GTAC 2 cut(s) 151, 259
CviAII CATG 3 cut(s) 89, 254, 272
CviQI GTAC 2 cut(s) 151, 259
DdeI CTNAG 1 cut(s) 42
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
EaeI YGGCCR 1 cut(s) 410
Eco130I CCWWGG 1 cut(s) 339
Eco47I GGWCC 1 cut(s) 239
Eco57I CTGAAG 1 cut(s) 318
EcoO109I RGGNCCY 1 cut(s) 239
EcoT14I CCWWGG 1 cut(s) 339
ErhI CCWWGG 1 cut(s) 339
FaeI CATG 3 cut(s) 92, 257, 275
FaiI YATR 9 cut(s) 7, 90, 140, 174, 179, 255, 273, 363, 365
FaqI GGGAC 2 cut(s) 107, 252
FatI CATG 3 cut(s) 88, 253, 271
Fnu4HI GCNGC 3 cut(s) 105, 269, 336
FokI GGATG 1 cut(s) 368
Fsp4HI GCNGC 3 cut(s) 105, 269, 336
FspBI CTAG 1 cut(s) 126
GluI GCNGC 3 cut(s) 105, 269, 336
HaeIII GGCC 2 cut(s) 289, 412
Hin1II CATG 3 cut(s) 92, 257, 275
HphI GGTGA 1 cut(s) 195
Hpy166II GTNNAC 2 cut(s) 151, 321
Hpy188I TCNGA 1 cut(s) 25
Hpy8I GTNNAC 2 cut(s) 151, 321
HpyAV CCTTC 1 cut(s) 252
HpyCH4III ACNGT 2 cut(s) 184, 217
HpyCH4IV ACGT 2 cut(s) 145, 261
HpyCH4V TGCA 7 cut(s) 19, 107, 253, 321, 335, 347, 397
HpyF10VI GCNNNNNNNGC 1 cut(s) 344
HpyF3I CTNAG 1 cut(s) 42
HpySE526I ACGT 2 cut(s) 145, 261
Hsp92II CATG 3 cut(s) 92, 257, 275
Kzo9I GATC 1 cut(s) 25
LpnPI CCDG 4 cut(s) 63, 132, 177, 303
Lsp1109I GCAGC 2 cut(s) 91, 347
LweI GCATC 1 cut(s) 292
MaeI CTAG 1 cut(s) 126
MaeII ACGT 2 cut(s) 145, 261
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MboII GAAGA 1 cut(s) 311
MflI RGATCY 1 cut(s) 25
MhlI GDGCHC 1 cut(s) 323
MluCI AATT 1 cut(s) 228
MmeI TCCRAC 1 cut(s) 233
MnlI CCTC 3 cut(s) 51, 105, 216
MseI TTAA 1 cut(s) 231
MslI CAYNNNNRTG 1 cut(s) 418
MwoI GCNNNNNNNGC 1 cut(s) 344
NdeII GATC 1 cut(s) 25
NlaIII CATG 3 cut(s) 92, 257, 275
NlaIV GGNNCC 1 cut(s) 240
NspI RCATGY 2 cut(s) 257, 275
OliI CACNNNNGTG 1 cut(s) 418
PaeI GCATGC 2 cut(s) 257, 275
Pfl23II CGTACG 1 cut(s) 258
PkrI GCNGC 3 cut(s) 106, 270, 337
PpuMI RGGWCCY 1 cut(s) 239
PsiI TTATAA 2 cut(s) 140, 179
Psp5II RGGWCCY 1 cut(s) 239
PspLI CGTACG 1 cut(s) 258
PspN4I GGNNCC 1 cut(s) 240
PspPI GGNCC 1 cut(s) 239
PspPPI RGGWCCY 1 cut(s) 239
PsrI GAACNNNNNNTAC 2 cut(s) 67, 99
PsuI RGATCY 1 cut(s) 25
RsaI GTAC 2 cut(s) 152, 260
RsaNI GTAC 2 cut(s) 151, 259
RseI CAYNNNNRTG 1 cut(s) 418
SaqAI TTAA 1 cut(s) 231
SatI GCNGC 3 cut(s) 105, 269, 336
Sau3AI GATC 1 cut(s) 25
Sau96I GGNCC 1 cut(s) 239
SduI GDGCHC 1 cut(s) 323
SetI ASST 7 cut(s) 99, 106, 148, 208, 244, 264, 403
SfaNI GCATC 1 cut(s) 292
SfcI CTRYAG 1 cut(s) 213
SinI GGWCC 1 cut(s) 239
SmiMI CAYNNNNRTG 1 cut(s) 418
SphI GCATGC 2 cut(s) 257, 275
Sse9I AATT 1 cut(s) 228
SsiI CCGC 1 cut(s) 268
SspMI CTAG 1 cut(s) 126
StyI CCWWGG 1 cut(s) 339
TaaI ACNGT 2 cut(s) 184, 217
TaiI ACGT 2 cut(s) 148, 264
TasI AATT 1 cut(s) 228
TatI WGTACW 1 cut(s) 150
TauI GCSGC 1 cut(s) 271
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TscAI CASTG 1 cut(s) 189
TseI GCWGC 2 cut(s) 104, 335
TspDTI ATGAA 1 cut(s) 372
TspRI CASTG 1 cut(s) 189
VneI GTGCAC 1 cut(s) 319
VpaK11BI GGWCC 1 cut(s) 239
XceI RCATGY 2 cut(s) 257, 275
XspI CTAG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.