Rmu_sc0000873.1_g000022

1-acyl-sn-glycerol-3-phosphate acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000873.1
OG0001488
Physical Location & Seq
Forward (+)
92997 .. 98380
5384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000873.1_g000022.1.cds

Sequence Viewer

Length: 1098 bp
atggttttgaccaaggcgattgcactcggaatcctcttttcagtggtcgtggtcctccatccgttaatccttcatctcatcccggtggtgctgctctgcgtctcaggcctctttgccaatctggttcaggcgttttgctttgtttgtatctggccgatttcgaagaacgcgtacgcaaggataaacggcgtggttaaagaattggattggcgggttctgctaggcctcattgattggtgtgctggcgttaagatcctagagtgcgtagagctcgaaaccagccatttaaagggtgaagaacatgaacttgttatatccaatgctagaaatggtgccgatcctcttcttgaactggttcttgctcagtggtcaggttgccttggcagtttattagctgtaataaagacatcagcaagatacataccggtcataggttggtcaatgtggtcttctggatatgctttttcaggaagaagttgtgaccaagatgccagaaaacttaagtcagatctaaaagacttccctcaacccttttggttatctgttgtgctagaaagaactggttttactcagggagagcttctagctgcacagaggcttcctgtccctagcaaggatttggtctatgcagtaagacgtgcgtactctgttgtttcagccatttatgtcataacagtgtccattcctgaaacttcacctccacctacacttgaaagtgtaattaaagggggaccttctgtggtgcatgtgtacatcaagcagcatgcgactaaaaaatgttctgaaactgatgatgctgttaaaaagtggtgcacagaaatacttgcagccaaggttgttatatctctaatcgtgttagggtctctaaagttcaacttcgtctgctgttccacactgcttgtattgagtgctgccctctttactggccgggtgcttactctgttcggctgtggagtgctttcgctgttgcagtgtttcatggaggccgctatagcaaacattagttggtcagagcacctcaagcccatctgtggctggttgattgatattcttggagaattgctttcgacgcttccctgtgacagaccttggttgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko00564 ko01100 ko01110 ko04072 map00561 map00564 map01100 map01110 map04072
Pfam Domains
Protein Families
Acyltransf_C Acyltransferase

Protein Analysis

365

Amino Acids

39.97

Weight (kDa)

7.87

Isoelectric Point (pI)

31.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 332
AccII CGCG 1 cut(s) 170
AciI CCGC 2 cut(s) 211, 987
AclWI GGATC 2 cut(s) 247, 332
AcoI YGGCCR 2 cut(s) 152, 925
AfaI GTAC 3 cut(s) 173, 644, 752
AfiI CCNNNNNNNGG 4 cut(s) 289, 431, 613, 1031
AflII CTTAAG 1 cut(s) 500
AflIII ACRYGT 1 cut(s) 168
AgeI ACCGGT 1 cut(s) 424
AgsI TTSAA 3 cut(s) 350, 713, 874
AjiI CACGTC 1 cut(s) 638
AluBI AGCT 4 cut(s) 271, 395, 580, 587
AluI AGCT 4 cut(s) 271, 395, 580, 587
Alw21I GWGCWC 3 cut(s) 273, 815, 1017
Alw26I GTCTC 2 cut(s) 106, 867
Alw44I GTGCAC 1 cut(s) 811
AlwI GGATC 2 cut(s) 247, 332
AoxI GGCC 5 cut(s) 106, 152, 223, 925, 984
ApaLI GTGCAC 1 cut(s) 811
ApeKI GCWGC 5 cut(s) 91, 587, 760, 827, 911
AsiGI ACCGGT 1 cut(s) 424
Asp700I GAANNNNTTC 1 cut(s) 354
AspS9I GGNCC 2 cut(s) 52, 731
AsuC2I CCSGG 2 cut(s) 83, 929
AsuHPI GGTGA 2 cut(s) 305, 687
AsuII TTCGAA 1 cut(s) 161
AvaII GGWCC 2 cut(s) 52, 731
BaeGI GKGCMC 1 cut(s) 815
BanI GGYRCC 1 cut(s) 332
BanII GRGCYC 1 cut(s) 273
BarI GAAGNNNNNNTAC 2 cut(s) 155, 187
BbsI GAAGAC 1 cut(s) 441
Bbv12I GWGCWC 3 cut(s) 273, 815, 1017
BbvI GCAGC 5 cut(s) 78, 574, 772, 839, 898
BccI CCATC 2 cut(s) 66, 1034
BceAI ACGGC 1 cut(s) 202
BcnI CCSGG 2 cut(s) 83, 929
BcoDI GTCTC 2 cut(s) 106, 867
BfaI CTAG 6 cut(s) 221, 257, 324, 551, 584, 609
BfmI CTRYAG 1 cut(s) 990
BfrI CTTAAG 1 cut(s) 500
BglII AGATCT 1 cut(s) 508
BisI GCNGC 6 cut(s) 92, 588, 761, 828, 912, 987
BlsI GCNGC 6 cut(s) 93, 589, 762, 829, 913, 988
Bme1390I CCNGG 2 cut(s) 83, 929
Bme18I GGWCC 2 cut(s) 52, 731
BmgBI CACGTC 1 cut(s) 638
BmgT120I GGNCC 2 cut(s) 52, 731
BmiI GGNNCC 2 cut(s) 334, 732
BmrFI CCNGG 2 cut(s) 83, 929
BmsI GCATC 2 cut(s) 478, 784
BpiI GAAGAC 1 cut(s) 441
Bpu14I TTCGAA 1 cut(s) 161
BpuEI CTTGAG 1 cut(s) 1004
BpuMI CCSGG 2 cut(s) 83, 929
BsaI GGTCTC 1 cut(s) 867
BsaJI CCNNGG 4 cut(s) 12, 379, 831, 1088
BsaWI WCCGGW 1 cut(s) 424
BsaXI ACNNNNNCTCC 2 cut(s) 682, 712
Bsc4I CCNNNNNNNGG 4 cut(s) 289, 431, 613, 1031
Bse118I RCCGGY 1 cut(s) 424
Bse1I ACTGG 3 cut(s) 357, 565, 928
BseDI CCNNGG 4 cut(s) 12, 379, 831, 1088
BseGI GGATG 2 cut(s) 58, 78
BseLI CCNNNNNNNGG 4 cut(s) 289, 431, 613, 1031
BseMII CTCAG 3 cut(s) 117, 377, 584
BseNI ACTGG 3 cut(s) 357, 565, 928
BseSI GKGCMC 1 cut(s) 815
BseXI GCAGC 5 cut(s) 78, 574, 772, 839, 898
BsgI GTGCAG 1 cut(s) 573
Bsh1236I CGCG 1 cut(s) 170
BshFI GGCC 5 cut(s) 108, 154, 225, 927, 986
BshNI GGYRCC 1 cut(s) 332
BshTI ACCGGT 1 cut(s) 424
BsiHKAI GWGCWC 3 cut(s) 273, 815, 1017
BsiSI CCGG 3 cut(s) 83, 425, 928
BsiWI CGTACG 1 cut(s) 171
BslFI GGGAC 2 cut(s) 590, 744
BslI CCNNNNNNNGG 4 cut(s) 289, 431, 613, 1031
BsmAI GTCTC 2 cut(s) 106, 867
BsmBI CGTCTC 1 cut(s) 106
BsmFI GGGAC 2 cut(s) 590, 744
BsnI GGCC 5 cut(s) 108, 154, 225, 927, 986
Bso31I GGTCTC 1 cut(s) 867
Bsp119I TTCGAA 1 cut(s) 161
Bsp1286I GDGCHC 3 cut(s) 273, 815, 1017
Bsp1407I TGTACA 1 cut(s) 750
Bsp143I GATC 3 cut(s) 252, 337, 508
BspACI CCGC 2 cut(s) 211, 987
BspANI GGCC 5 cut(s) 108, 154, 225, 927, 986
BspCNI CTCAG 3 cut(s) 116, 376, 583
BspFNI CGCG 1 cut(s) 170
BspLI GGNNCC 2 cut(s) 334, 732
BspPI GGATC 2 cut(s) 247, 332
BspT104I TTCGAA 1 cut(s) 161
BspT107I GGYRCC 1 cut(s) 332
BspTI CTTAAG 1 cut(s) 500
BspTNI GGTCTC 1 cut(s) 867
BsrFI RCCGGY 1 cut(s) 424
BsrGI TGTACA 1 cut(s) 750
BsrI ACTGG 3 cut(s) 357, 565, 928
BssAI RCCGGY 1 cut(s) 424
BssECI CCNNGG 4 cut(s) 12, 379, 831, 1088
BssMI GATC 3 cut(s) 252, 337, 508
BssT1I CCWWGG 4 cut(s) 12, 379, 831, 1088
Bst4CI ACNGT 1 cut(s) 676
Bst6I CTCTTC 1 cut(s) 348
BstAFI CTTAAG 1 cut(s) 500
BstAUI TGTACA 1 cut(s) 750
BstBI TTCGAA 1 cut(s) 161
BstC8I GCNNGC 2 cut(s) 244, 765
BstDEI CTNAG 3 cut(s) 103, 363, 570
BstF5I GGATG 2 cut(s) 58, 78
BstFNI CGCG 1 cut(s) 170
BstKTI GATC 3 cut(s) 255, 340, 511
BstMAI GTCTC 2 cut(s) 106, 867
BstMBI GATC 3 cut(s) 252, 337, 508
BstMWI GCNNNNNNNGC 5 cut(s) 105, 217, 992, 1021, 1069
BstNSI RCATGY 2 cut(s) 749, 767
BstSCI CCNGG 2 cut(s) 81, 927
BstSFI CTRYAG 1 cut(s) 990
BstSLI GKGCMC 1 cut(s) 815
BstUI CGCG 1 cut(s) 170
BstV1I GCAGC 5 cut(s) 78, 574, 772, 839, 898
BstV2I GAAGAC 1 cut(s) 441
BstX2I RGATCY 2 cut(s) 252, 508
BstYI RGATCY 2 cut(s) 252, 508
BsuRI GGCC 5 cut(s) 108, 154, 225, 927, 986
BtrI CACGTC 1 cut(s) 638
BtsCI GGATG 2 cut(s) 58, 78
BtsI GCAGTG 2 cut(s) 893, 977
BtsIMutI CAGTG 5 cut(s) 48, 371, 681, 893, 977
Cac8I GCNNGC 2 cut(s) 244, 765
Cfr10I RCCGGY 1 cut(s) 424
Cfr13I GGNCC 2 cut(s) 52, 731
CseI GACGC 2 cut(s) 88, 1078
Csp6I GTAC 3 cut(s) 172, 643, 751
CspAI ACCGGT 1 cut(s) 424
CspCI CAANNNNNGTGG 2 cut(s) 880, 915
CviAII CATG 4 cut(s) 302, 746, 764, 979
CviQI GTAC 3 cut(s) 172, 643, 751
DdeI CTNAG 3 cut(s) 103, 363, 570
DpnI GATC 3 cut(s) 254, 339, 510
DpnII GATC 3 cut(s) 252, 337, 508
DraI TTTAAA 1 cut(s) 288
EaeI YGGCCR 2 cut(s) 152, 925
Eam1104I CTCTTC 1 cut(s) 348
EarI CTCTTC 1 cut(s) 348
Ecl136II GAGCTC 1 cut(s) 271
Eco130I CCWWGG 4 cut(s) 12, 379, 831, 1088
Eco147I AGGCCT 2 cut(s) 108, 225
Eco24I GRGCYC 1 cut(s) 273
Eco31I GGTCTC 1 cut(s) 867
Eco47I GGWCC 2 cut(s) 52, 731
Eco53kI GAGCTC 1 cut(s) 271
EcoICRI GAGCTC 1 cut(s) 271
EcoO109I RGGNCCY 1 cut(s) 731
EcoT14I CCWWGG 4 cut(s) 12, 379, 831, 1088
EcoT38I GRGCYC 1 cut(s) 273
ErhI CCWWGG 4 cut(s) 12, 379, 831, 1088
Esp3I CGTCTC 1 cut(s) 106
FaeI CATG 4 cut(s) 305, 749, 767, 982
FalI AAGNNNNNCTT 2 cut(s) 860, 892
FaqI GGGAC 2 cut(s) 590, 744
FatI CATG 4 cut(s) 301, 745, 763, 978
FauI CCCGC 1 cut(s) 204
Fnu4HI GCNGC 6 cut(s) 92, 588, 761, 828, 912, 987
FokI GGATG 2 cut(s) 45, 65
FriOI GRGCYC 1 cut(s) 273
Fsp4HI GCNGC 6 cut(s) 92, 588, 761, 828, 912, 987
FspBI CTAG 6 cut(s) 221, 257, 324, 551, 584, 609
GluI GCNGC 6 cut(s) 92, 588, 761, 828, 912, 987
HaeIII GGCC 5 cut(s) 108, 154, 225, 927, 986
HapII CCGG 3 cut(s) 83, 425, 928
HgaI GACGC 2 cut(s) 88, 1078
Hin1II CATG 4 cut(s) 305, 749, 767, 982
HinfI GANTC 1 cut(s) 30
HpaII CCGG 3 cut(s) 83, 425, 928
HphI GGTGA 2 cut(s) 305, 687
Hpy166II GTNNAC 2 cut(s) 751, 813
Hpy188I TCNGA 4 cut(s) 29, 508, 784, 1012
Hpy188III TCNNGA 4 cut(s) 347, 453, 468, 686
Hpy8I GTNNAC 2 cut(s) 751, 813
Hpy99I CGWCG 1 cut(s) 1072
HpyAV CCTTC 2 cut(s) 80, 744
HpyCH4III ACNGT 1 cut(s) 676
HpyCH4IV ACGT 1 cut(s) 637
HpyCH4V TGCA 7 cut(s) 23, 590, 629, 745, 813, 827, 970
HpyF10VI GCNNNNNNNGC 5 cut(s) 105, 217, 992, 1021, 1069
HpyF3I CTNAG 3 cut(s) 103, 363, 570
HpySE526I ACGT 1 cut(s) 637
Hsp92II CATG 4 cut(s) 305, 749, 767, 982
Kzo9I GATC 3 cut(s) 252, 337, 508
Lsp1109I GCAGC 5 cut(s) 78, 574, 772, 839, 898
LweI GCATC 2 cut(s) 478, 784
MaeI CTAG 6 cut(s) 221, 257, 324, 551, 584, 609
MaeII ACGT 1 cut(s) 637
MaeIII GTNAC 2 cut(s) 479, 1079
MalI GATC 3 cut(s) 254, 339, 510
MboI GATC 3 cut(s) 252, 337, 508
MboII GAAGA 5 cut(s) 175, 308, 335, 441, 483
MflI RGATCY 2 cut(s) 252, 508
MhlI GDGCHC 3 cut(s) 273, 815, 1017
MluCI AATT 3 cut(s) 200, 720, 1058
MluI ACGCGT 1 cut(s) 168
MroXI GAANNNNTTC 1 cut(s) 354
MseI TTAA 7 cut(s) 65, 195, 249, 287, 501, 723, 801
MslI CAYNNNNRTG 2 cut(s) 83, 674
MspCI CTTAAG 1 cut(s) 500
MspI CCGG 3 cut(s) 83, 425, 928
MspR9I CCNGG 2 cut(s) 83, 929
MvnI CGCG 1 cut(s) 170
MwoI GCNNNNNNNGC 5 cut(s) 105, 217, 992, 1021, 1069
NciI CCSGG 2 cut(s) 83, 929
NdeII GATC 3 cut(s) 252, 337, 508
NlaIII CATG 4 cut(s) 305, 749, 767, 982
NlaIV GGNNCC 2 cut(s) 334, 732
NmuCI GTSAC 2 cut(s) 479, 1079
NspI RCATGY 2 cut(s) 749, 767
NspV TTCGAA 1 cut(s) 161
PaeI GCATGC 1 cut(s) 767
PceI AGGCCT 2 cut(s) 108, 225
PcsI WCGNNNNNNNCGW 1 cut(s) 167
PdmI GAANNNNTTC 1 cut(s) 354
PfeI GAWTC 1 cut(s) 30
Pfl23II CGTACG 1 cut(s) 171
PinAI ACCGGT 1 cut(s) 424
PkrI GCNGC 6 cut(s) 93, 589, 762, 829, 913, 988
PpuMI RGGWCCY 1 cut(s) 731
Psp124BI GAGCTC 1 cut(s) 273
Psp5II RGGWCCY 1 cut(s) 731
PspLI CGTACG 1 cut(s) 171
PspN4I GGNNCC 2 cut(s) 334, 732
PspPI GGNCC 2 cut(s) 52, 731
PspPPI RGGWCCY 1 cut(s) 731
PsrI GAACNNNNNNTAC 2 cut(s) 550, 582
PsuI RGATCY 2 cut(s) 252, 508
RsaI GTAC 3 cut(s) 173, 644, 752
RsaNI GTAC 3 cut(s) 172, 643, 751
RseI CAYNNNNRTG 2 cut(s) 83, 674
SacI GAGCTC 1 cut(s) 273
SaqAI TTAA 7 cut(s) 65, 195, 249, 287, 501, 723, 801
SatI GCNGC 6 cut(s) 92, 588, 761, 828, 912, 987
Sau3AI GATC 3 cut(s) 252, 337, 508
Sau96I GGNCC 2 cut(s) 52, 731
ScrFI CCNGG 2 cut(s) 83, 929
SduI GDGCHC 3 cut(s) 273, 815, 1017
SfaNI GCATC 2 cut(s) 478, 784
SfcI CTRYAG 1 cut(s) 990
SfuI TTCGAA 1 cut(s) 161
SinI GGWCC 2 cut(s) 52, 731
SmiMI CAYNNNNRTG 2 cut(s) 83, 674
SmlI CTYRAG 2 cut(s) 500, 1019
SmoI CTYRAG 2 cut(s) 500, 1019
SphI GCATGC 1 cut(s) 767
Sse9I AATT 3 cut(s) 200, 720, 1058
SseBI AGGCCT 2 cut(s) 108, 225
SsiI CCGC 2 cut(s) 211, 987
SspMI CTAG 6 cut(s) 221, 257, 324, 551, 584, 609
SstI GAGCTC 1 cut(s) 273
StuI AGGCCT 2 cut(s) 108, 225
StyD4I CCNGG 2 cut(s) 81, 927
StyI CCWWGG 4 cut(s) 12, 379, 831, 1088
TaaI ACNGT 1 cut(s) 676
TaiI ACGT 1 cut(s) 640
TaqI TCGA 3 cut(s) 161, 273, 1067
TasI AATT 3 cut(s) 200, 720, 1058
TatI WGTACW 1 cut(s) 750
TauI GCSGC 1 cut(s) 989
TfiI GAWTC 1 cut(s) 30
Tru1I TTAA 7 cut(s) 65, 195, 249, 287, 501, 723, 801
Tru9I TTAA 7 cut(s) 65, 195, 249, 287, 501, 723, 801
TscAI CASTG 5 cut(s) 48, 371, 681, 900, 977
TseFI GTSAC 2 cut(s) 479, 1079
TseI GCWGC 5 cut(s) 91, 587, 760, 827, 911
Tsp45I GTSAC 2 cut(s) 479, 1079
TspDTI ATGAA 3 cut(s) 62, 318, 967
TspGWI ACGGA 1 cut(s) 51
TspRI CASTG 5 cut(s) 48, 371, 681, 900, 977
Vha464I CTTAAG 1 cut(s) 500
VneI GTGCAC 1 cut(s) 811
VpaK11BI GGWCC 2 cut(s) 52, 731
XceI RCATGY 2 cut(s) 749, 767
XmnI GAANNNNTTC 1 cut(s) 354
XspI CTAG 6 cut(s) 221, 257, 324, 551, 584, 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.