Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0001488

Physical Location & Seq

Genomic Coordinates Reverse (-)

27039146 .. 27045750

Gene Structure 6605 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG276000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGGTAAAGAACATGCACTTGTCATATGCAATCACAAAAGTGATATTGATTGGCTTGTTGGATGGGTTCTAGCTCAGCGGTCAGGTTGCCTTGGCAGCTCATTAGCTGTAATGAAGAAATCATCCAAATTTCTTCCGGTAATAGGGTGGTCAATGTGGTTTTCTGAATATCTCTTTTTGGAAAGAAGCTGGGCAAAAGATGAAGGCACAATAAAGTCAGGTATTCAACGGCTGAAGGACTACCCTCAGCCCTTTTGGTTAGCTCTTTTTGTAGAAGGAACTCGTTTTACACAGGCAAAGCTTTTGGCAGCACAGGAATATGCCGCCTCAACAGGGCTACCTGTCCCTAGAAATGTTTTGATTCCTCGCACTAAGGGTTTTGTCTCAGCAGTAAGTCACATGCGCTCATTTGTTCCAGCCATATATGATATAACAGTGGCTATTCCTAAAAGTTCACCTGCACCTACAATGCTAAGACTGTTTGAGGGGCGACCGTCTGTGGTGCACGTACACATCAAGAGGCATGTGATGAAGGACTTGCCTGAAACTGATGATGCTGTTGCACAATGGTGTAAGGAAGCATTTGTGGCCAAGGATGCATTATTGGACAAACATGCAGTAGAGCAAACTTTTGGCGATCAAGAATTGCAAATTACTAGGCGGCCACTGAAGTCACTTTTGGTTGTTACATCTTGGGCATGTTTACTGGTTTTGGGGTCCCTAAAGTTCCTCTACTGGTCTTCACTTCTATCCTCGTGGAAGGGCATTGCATTCTCAGCATTGGGTTTGGGCATTGTTACCGTCCTCATGCAGATCTTGATTCGGTTTTCTCAGTCAGAGCATTCAACCCCTGCCAAAGTGGCTCCTGCAAAGCATAATAATGGAGAGGCTTCTGGTGAACCAACCAAACAGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003841 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008374 GO:0012505 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0042171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071617

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04072 map00561 map00564 map01100 map01110 map04072

Pfam Domains

Protein Families

Acyltransf_C Acyltransferase

Protein Analysis

305

Amino Acids

33.94

Weight (kDa)

9.46

Isoelectric Point (pI)

44.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyltransferase	PF01553	4 - 148	1.7e-14	Acyltransferase
Acyltransf_C	PF16076	159 - 232	1.5e-23	Acyltransferase C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57650
fragaria_vesca	FvH4_6g23240 FvH4_6g23240 FvH4_6g23240 FvH4_6g36950 FvH4_6g36960 FvH4_6g36962
malus_domestica	MD12G1066700.v1.1 MD14G1067300.v1.1
prunus_persica	Prupe.7G067600_v2.0.a1
pyrus_communis	pycom12g05810 pycom14g05530
rosa_chinensis	RchiOBHm_Chr2g0149391 RchiOBHm_Chr2g0149421 RchiOBHm_Chr2g0149441 RchiOBHm_Chr2g0149461 RchiOBHm_Chr2g0149471 RchiOBHm_Chr3g0481071
rosa_laevigata	RLG00000020324 RLG00000020404 RLG00000020406 RLG00000020407 RLG00000023423
rosa_multiflora	Rmu_co8437371.1_g000001 Rmu_sc0000873.1_g000022 Rmu_sc0000873.1_g000026 Rmu_sc0000873.1_g000027 Rmu_sc0000873.1_g000029 Rmu_sc0001551.1_g000024 Rmu_sc0002187.1_g000054
rosa_roxburghii	Rroxscaffold_2G00098120 Rroxscaffold_2G00098130 Rroxscaffold_6G00400660
rosa_rugosa	Rorug03G0190000 Rorug03G0190100 Rorug04G0357400 Rorug04G0357500 Rorug04G0357600
rosa_samantha	Rh3AG240300 Rh3BG276000 Rh3CG271300 Rh3DG267300 Rh5BG363100
rosa_wichuraiana	Rw2G038400 Rw2G038410 Rw2G038420 Rw2G038430 Rw2G038440 Rw2G038450 Rw3G021460 Rw6G011250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	466
Acc36I	ACCTGC	1 cut(s)	466
AciI	CCGC	3 cut(s)	79, 324, 661
AcoI	YGGCCR	2 cut(s)	588, 662
AcsI	RAATTY	1 cut(s)	128
AcuI	CTGAAG	2 cut(s)	254, 689
AfaI	GTAC	1 cut(s)	510
AfiI	CCNNNNNNNGG	2 cut(s)	143, 333
AgsI	TTSAA	2 cut(s)	227, 846
AjuI	GAANNNNNNNTTGG	2 cut(s)	662, 694
AleI	CACNNNNGTG	2 cut(s)	39, 568
AluBI	AGCT	6 cut(s)	74, 99, 107, 189, 263, 301
AluI	AGCT	6 cut(s)	74, 99, 107, 189, 263, 301
Alw21I	GWGCWC	1 cut(s)	507
Alw26I	GTCTC	1 cut(s)	388
Alw44I	GTGCAC	1 cut(s)	503
AoxI	GGCC	2 cut(s)	588, 662
ApaLI	GTGCAC	1 cut(s)	503
ApeKI	GCWGC	2 cut(s)	96, 308
ApoI	RAATTY	1 cut(s)	128
AspLEI	GCGC	1 cut(s)	405
AspS9I	GGNCC	1 cut(s)	717
AsuHPI	GGTGA	2 cut(s)	447, 908
AvaII	GGWCC	1 cut(s)	717
BaeGI	GKGCMC	1 cut(s)	507
BalI	TGGCCA	1 cut(s)	590
BauI	CACGAG	1 cut(s)	754
BbsI	GAAGAC	1 cut(s)	732
Bbv12I	GWGCWC	1 cut(s)	507
BbvCI	CCTCAGC	1 cut(s)	246
BbvI	GCAGC	2 cut(s)	108, 320
BccI	CCATC	1 cut(s)	57
BceAI	ACGGC	1 cut(s)	245
BcoDI	GTCTC	1 cut(s)	388
BfaI	CTAG	3 cut(s)	71, 348, 657
BfuAI	ACCTGC	1 cut(s)	466
BglI	GCCNNNNNGGC	1 cut(s)	860
BglII	AGATCT	1 cut(s)	813
BisI	GCNGC	4 cut(s)	97, 309, 324, 662
BlpI	GCTNAGC	1 cut(s)	75
BlsI	GCNGC	4 cut(s)	98, 310, 325, 663
Bme18I	GGWCC	1 cut(s)	717
BmgT120I	GGNCC	1 cut(s)	717
BmiI	GGNNCC	3 cut(s)	718, 719, 864
BmsI	GCATC	2 cut(s)	544, 586
BpiI	GAAGAC	1 cut(s)	732
Bpu10I	CCTNAGC	1 cut(s)	246
Bpu1102I	GCTNAGC	1 cut(s)	75
BsaAI	YACGTR	1 cut(s)	508
BsaJI	CCNNGG	2 cut(s)	91, 591
BsaWI	WCCGGW	1 cut(s)	136
Bsc4I	CCNNNNNNNGG	2 cut(s)	143, 333
Bse1I	ACTGG	2 cut(s)	711, 740
Bse3DI	GCAATG	1 cut(s)	765
BseDI	CCNNGG	2 cut(s)	91, 591
BseGI	GGATG	3 cut(s)	68, 122, 601
BseLI	CCNNNNNNNGG	2 cut(s)	143, 333
BseMI	GCAATG	1 cut(s)	765
BseMII	CTCAG	5 cut(s)	89, 260, 399, 789, 845
BseNI	ACTGG	2 cut(s)	711, 740
BseSI	GKGCMC	1 cut(s)	507
BseXI	GCAGC	2 cut(s)	108, 320
BseYI	CCCAGC	1 cut(s)	189
BsgI	GTGCAG	1 cut(s)	444
Bsh1285I	CGRYCG	1 cut(s)	494
BshFI	GGCC	2 cut(s)	590, 664
BsiEI	CGRYCG	1 cut(s)	494
BsiHKAI	GWGCWC	1 cut(s)	507
BsiSI	CCGG	1 cut(s)	137
BslFI	GGGAC	2 cut(s)	329, 703
BslI	CCNNNNNNNGG	2 cut(s)	143, 333
BsmAI	GTCTC	1 cut(s)	388
BsmFI	GGGAC	2 cut(s)	329, 703
BsmI	GAATGC	2 cut(s)	770, 841
BsnI	GGCC	2 cut(s)	590, 664
Bsp1286I	GDGCHC	1 cut(s)	507
Bsp143I	GATC	2 cut(s)	637, 813
Bsp1720I	GCTNAGC	1 cut(s)	75
BspACI	CCGC	3 cut(s)	79, 324, 661
BspANI	GGCC	2 cut(s)	590, 664
BspCNI	CTCAG	5 cut(s)	88, 259, 398, 788, 844
BspLI	GGNNCC	3 cut(s)	718, 719, 864
BspMI	ACCTGC	1 cut(s)	466
BsrDI	GCAATG	1 cut(s)	765
BsrI	ACTGG	2 cut(s)	711, 740
BssECI	CCNNGG	2 cut(s)	91, 591
BssMI	GATC	2 cut(s)	637, 813
BssSI	CACGAG	1 cut(s)	754
BssT1I	CCWWGG	2 cut(s)	91, 591
Bst2BI	CACGAG	1 cut(s)	754
Bst4CI	ACNGT	4 cut(s)	436, 480, 495, 802
BstBAI	YACGTR	1 cut(s)	508
BstDEI	CTNAG	7 cut(s)	75, 246, 372, 385, 473, 775, 831
BstF5I	GGATG	3 cut(s)	68, 122, 601
BstHHI	GCGC	1 cut(s)	405
BstKTI	GATC	2 cut(s)	640, 816
BstMAI	GTCTC	1 cut(s)	388
BstMBI	GATC	2 cut(s)	637, 813
BstMCI	CGRYCG	1 cut(s)	494
BstMWI	GCNNNNNNNGC	5 cut(s)	96, 587, 596, 776, 860
BstNSI	RCATGY	5 cut(s)	17, 403, 527, 617, 702
BstSLI	GKGCMC	1 cut(s)	507
BstV1I	GCAGC	2 cut(s)	108, 320
BstV2I	GAAGAC	1 cut(s)	732
BstX2I	RGATCY	1 cut(s)	813
BstYI	RGATCY	1 cut(s)	813
BsuRI	GGCC	2 cut(s)	590, 664
BtsCI	GGATG	3 cut(s)	68, 122, 601
BtsIMutI	CAGTG	2 cut(s)	441, 665
BveI	ACCTGC	1 cut(s)	466
CfoI	GCGC	1 cut(s)	405
Cfr13I	GGNCC	1 cut(s)	717
Csp6I	GTAC	1 cut(s)	509
CviAII	CATG	6 cut(s)	14, 400, 524, 614, 699, 808
CviQI	GTAC	1 cut(s)	509
DdeI	CTNAG	7 cut(s)	75, 246, 372, 385, 473, 775, 831
DpnI	GATC	2 cut(s)	639, 815
DpnII	GATC	2 cut(s)	637, 813
EaeI	YGGCCR	2 cut(s)	588, 662
Eco130I	CCWWGG	2 cut(s)	91, 591
Eco47I	GGWCC	1 cut(s)	717
Eco57I	CTGAAG	2 cut(s)	254, 689
EcoO109I	RGGNCCY	1 cut(s)	717
EcoT14I	CCWWGG	2 cut(s)	91, 591
EcoT22I	ATGCAT	1 cut(s)	601
ErhI	CCWWGG	2 cut(s)	91, 591
FaeI	CATG	6 cut(s)	17, 403, 527, 617, 702, 811
FaqI	GGGAC	2 cut(s)	329, 703
FatI	CATG	6 cut(s)	13, 399, 523, 613, 698, 807
FauNDI	CATATG	1 cut(s)	26
Fnu4HI	GCNGC	4 cut(s)	97, 309, 324, 662
FokI	GGATG	3 cut(s)	75, 109, 608
Fsp4HI	GCNGC	4 cut(s)	97, 309, 324, 662
FspBI	CTAG	3 cut(s)	71, 348, 657
GlaI	GCGC	1 cut(s)	404
GluI	GCNGC	4 cut(s)	97, 309, 324, 662
GsaI	CCCAGC	1 cut(s)	193
HaeIII	GGCC	2 cut(s)	590, 664
HapII	CCGG	1 cut(s)	137
HhaI	GCGC	1 cut(s)	405
Hin1II	CATG	6 cut(s)	17, 403, 527, 617, 702, 811
Hin6I	GCGC	1 cut(s)	403
HinP1I	GCGC	1 cut(s)	403
HindIII	AAGCTT	1 cut(s)	299
HinfI	GANTC	2 cut(s)	361, 820
HpaII	CCGG	1 cut(s)	137
HphI	GGTGA	2 cut(s)	447, 908
Hpy166II	GTNNAC	5 cut(s)	455, 505, 511, 704, 899
Hpy188I	TCNGA	2 cut(s)	166, 838
Hpy188III	TCNNGA	3 cut(s)	517, 641, 817
Hpy8I	GTNNAC	5 cut(s)	455, 505, 511, 704, 899
HpyAV	CCTTC	5 cut(s)	197, 229, 269, 526, 754
HpyCH4III	ACNGT	4 cut(s)	436, 480, 495, 802
HpyCH4IV	ACGT	1 cut(s)	507
HpyF10VI	GCNNNNNNNGC	5 cut(s)	96, 587, 596, 776, 860
HpyF3I	CTNAG	7 cut(s)	75, 246, 372, 385, 473, 775, 831
HpySE526I	ACGT	1 cut(s)	507
Hsp92II	CATG	6 cut(s)	17, 403, 527, 617, 702, 811
HspAI	GCGC	1 cut(s)	403
KflI	GGGWCCC	1 cut(s)	717
Kzo9I	GATC	2 cut(s)	637, 813
LmnI	GCTCC	1 cut(s)	868
Lsp1109I	GCAGC	2 cut(s)	108, 320
LweI	GCATC	2 cut(s)	544, 586
MaeI	CTAG	3 cut(s)	71, 348, 657
MaeII	ACGT	1 cut(s)	507
MaeIII	GTNAC	4 cut(s)	395, 672, 685, 796
MalI	GATC	2 cut(s)	639, 815
MboI	GATC	2 cut(s)	637, 813
MboII	GAAGA	3 cut(s)	125, 127, 732
MflI	RGATCY	1 cut(s)	813
MhlI	GDGCHC	1 cut(s)	507
MlsI	TGGCCA	1 cut(s)	590
MluCI	AATT	3 cut(s)	128, 644, 651
MluNI	TGGCCA	1 cut(s)	590
MmeI	TCCRAC	1 cut(s)	40
MnlI	CCTC	9 cut(s)	255, 337, 375, 478, 513, 740, 763, 815, 880
Mox20I	TGGCCA	1 cut(s)	590
Mph1103I	ATGCAT	1 cut(s)	601
MscI	TGGCCA	1 cut(s)	590
MslI	CAYNNNNRTG	3 cut(s)	39, 568, 879
Msp20I	TGGCCA	1 cut(s)	590
MspA1I	CMGCKG	1 cut(s)	79
MspI	CCGG	1 cut(s)	137
Mva1269I	GAATGC	2 cut(s)	770, 841
MwoI	GCNNNNNNNGC	5 cut(s)	96, 587, 596, 776, 860
NdeI	CATATG	1 cut(s)	26
NdeII	GATC	2 cut(s)	637, 813
NlaIII	CATG	6 cut(s)	17, 403, 527, 617, 702, 811
NlaIV	GGNNCC	3 cut(s)	718, 719, 864
NmuCI	GTSAC	2 cut(s)	395, 672
NsiI	ATGCAT	1 cut(s)	601
NspI	RCATGY	5 cut(s)	17, 403, 527, 617, 702
OliI	CACNNNNGTG	2 cut(s)	39, 568
PaqCI	CACCTGC	1 cut(s)	466
PctI	GAATGC	2 cut(s)	770, 841
PfeI	GAWTC	2 cut(s)	361, 820
PkrI	GCNGC	4 cut(s)	98, 310, 325, 663
Ppu21I	YACGTR	1 cut(s)	508
PpuMI	RGGWCCY	1 cut(s)	717
Psp5II	RGGWCCY	1 cut(s)	717
PspFI	CCCAGC	1 cut(s)	189
PspN4I	GGNNCC	3 cut(s)	718, 719, 864
PspPI	GGNCC	1 cut(s)	717
PspPPI	RGGWCCY	1 cut(s)	717
PsrI	GAACNNNNNNTAC	2 cut(s)	271, 303
PsuI	RGATCY	1 cut(s)	813
RsaI	GTAC	1 cut(s)	510
RsaNI	GTAC	1 cut(s)	509
RseI	CAYNNNNRTG	3 cut(s)	39, 568, 879
SatI	GCNGC	4 cut(s)	97, 309, 324, 662
Sau3AI	GATC	2 cut(s)	637, 813
Sau96I	GGNCC	1 cut(s)	717
SduI	GDGCHC	1 cut(s)	507
SfaNI	GCATC	2 cut(s)	544, 586
SinI	GGWCC	1 cut(s)	717
SmiMI	CAYNNNNRTG	3 cut(s)	39, 568, 879
Sse9I	AATT	3 cut(s)	128, 644, 651
SsiI	CCGC	3 cut(s)	79, 324, 661
SspMI	CTAG	3 cut(s)	71, 348, 657
StyI	CCWWGG	2 cut(s)	91, 591
TaaI	ACNGT	4 cut(s)	436, 480, 495, 802
TaiI	ACGT	1 cut(s)	510
TasI	AATT	3 cut(s)	128, 644, 651
TauI	GCSGC	2 cut(s)	326, 664
TfiI	GAWTC	2 cut(s)	361, 820
TscAI	CASTG	2 cut(s)	441, 672
TseFI	GTSAC	2 cut(s)	395, 672
TseI	GCWGC	2 cut(s)	96, 308
Tsp45I	GTSAC	2 cut(s)	395, 672
TspDTI	ATGAA	3 cut(s)	128, 216, 545
TspRI	CASTG	2 cut(s)	441, 672
VneI	GTGCAC	1 cut(s)	503
VpaK11BI	GGWCC	1 cut(s)	717
XapI	RAATTY	1 cut(s)	128
XceI	RCATGY	5 cut(s)	17, 403, 527, 617, 702
XspI	CTAG	3 cut(s)	71, 348, 657
Zsp2I	ATGCAT	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.