Rorug03G0190000

1-acyl-sn-glycerol-3-phosphate acyltransferase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
16624699 .. 16625322
624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0190000.1

Sequence Viewer

Length: 624 bp
ATGGCTTCCTTCGTGAAAACATTCTCATTTTTCATCCTTCTGGTGCTTTTCAGCTCTCTGCAAATTGAAGCCAGCGACAGATTGTTCTTCAGCAAAGTTAGCGGTTCCAACAACAATTACAATGCCAAGGATCCCAAGATCCCCCTTAGTTACCAACAAGAGGCTAAACCTTCACCAGAAGTTGCAGCACTAACAACCCAGGCACAAAAAGTGGCTGTTGATCCACCAAAGAAACCAATGTTCACTCGCAACCAATATGAAAGCTTATTCGGTTCTACAGATGACACATCGGCTGCCATTGGTACCAGCTCAAACAGCGACAATGGCAAGAAAAAAAACAGCAATGGGGATAACTTCATTTACAATATGGAAAGTGACTACAATGGCAATGGCAATGGCGATGACAAAATCTCGGATGAGATTAAACAGCAAGGGCTCAGTGATACAAGGTTTTTGGAACATGGTCGTTACATTGTTGATAAAAATAGGTTCAATGGTTATGGTACTGCACGGAGAGGAAGCACTGGTAATGAGGGTTTTGATGGCAAGAGCGGGAAGCAGAACGAGTTCGACTCCTTGGAGGAATATGAGAAGAAACTGCAGAGGACCGGATATCTTCCTTGA

Protein Analysis

207

Amino Acids

23.02

Weight (kDa)

5.95

Isoelectric Point (pI)

17.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 302
AccB1I GGYRCC 1 cut(s) 302
AccBSI CCGCTC 1 cut(s) 552
AciI CCGC 2 cut(s) 102, 552
AclWI GGATC 4 cut(s) 125, 133, 138, 215
AcuI CTGAAG 1 cut(s) 73
AfaI GTAC 2 cut(s) 304, 505
AfiI CCNNNNNNNGG 1 cut(s) 160
AgsI TTSAA 2 cut(s) 68, 493
AjnI CCWGG 1 cut(s) 198
AluBI AGCT 3 cut(s) 54, 264, 309
AluI AGCT 3 cut(s) 54, 264, 309
AlwI GGATC 4 cut(s) 125, 133, 138, 215
ApeKI GCWGC 2 cut(s) 185, 293
Asp700I GAANNNNTTC 2 cut(s) 20, 566
Asp718I GGTACC 1 cut(s) 302
AspS9I GGNCC 1 cut(s) 606
AsuHPI GGTGA 1 cut(s) 165
AvaII GGWCC 1 cut(s) 606
BamHI GGATCC 1 cut(s) 130
BanI GGYRCC 1 cut(s) 302
BanII GRGCYC 1 cut(s) 438
BbvI GCAGC 2 cut(s) 197, 280
BccI CCATC 1 cut(s) 536
BciT130I CCWGG 1 cut(s) 200
BfmI CTRYAG 2 cut(s) 276, 599
BisI GCNGC 2 cut(s) 186, 294
BlsI GCNGC 2 cut(s) 187, 295
Bme1390I CCNGG 1 cut(s) 200
Bme18I GGWCC 1 cut(s) 606
BmgT120I GGNCC 1 cut(s) 606
BmiI GGNNCC 3 cut(s) 106, 132, 304
BmrFI CCNGG 1 cut(s) 200
BplI GAGNNNNNCTC 2 cut(s) 557, 589
BsaJI CCNNGG 3 cut(s) 126, 198, 576
BsaWI WCCGGW 1 cut(s) 608
Bsc4I CCNNNNNNNGG 1 cut(s) 160
Bse1I ACTGG 1 cut(s) 529
Bse3DI GCAATG 3 cut(s) 349, 394, 400
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 3 cut(s) 126, 198, 576
BseGI GGATG 2 cut(s) 33, 421
BseLI CCNNNNNNNGG 1 cut(s) 160
BseMI GCAATG 3 cut(s) 349, 394, 400
BseMII CTCAG 1 cut(s) 451
BseNI ACTGG 1 cut(s) 529
BseXI GCAGC 2 cut(s) 197, 280
BsgI GTGCAG 1 cut(s) 492
BshNI GGYRCC 1 cut(s) 302
BsiSI CCGG 1 cut(s) 609
BslI CCNNNNNNNGG 1 cut(s) 160
Bsp1286I GDGCHC 1 cut(s) 438
Bsp143I GATC 3 cut(s) 130, 138, 220
BspACI CCGC 2 cut(s) 102, 552
BspCNI CTCAG 1 cut(s) 450
BspLI GGNNCC 3 cut(s) 106, 132, 304
BspMAI CTGCAG 1 cut(s) 603
BspPI GGATC 4 cut(s) 125, 133, 138, 215
BspT107I GGYRCC 1 cut(s) 302
BsrBI CCGCTC 1 cut(s) 552
BsrDI GCAATG 3 cut(s) 349, 394, 400
BsrI ACTGG 1 cut(s) 529
BssECI CCNNGG 3 cut(s) 126, 198, 576
BssMI GATC 3 cut(s) 130, 138, 220
BssT1I CCWWGG 2 cut(s) 126, 576
Bst2UI CCWGG 1 cut(s) 200
BstC8I GCNNGC 1 cut(s) 73
BstDEI CTNAG 2 cut(s) 146, 437
BstF5I GGATG 2 cut(s) 33, 421
BstKTI GATC 3 cut(s) 133, 141, 223
BstMBI GATC 3 cut(s) 130, 138, 220
BstMWI GCNNNNNNNGC 3 cut(s) 99, 315, 324
BstNI CCWGG 1 cut(s) 200
BstSCI CCNGG 1 cut(s) 198
BstSFI CTRYAG 2 cut(s) 276, 599
BstV1I GCAGC 2 cut(s) 197, 280
BstX2I RGATCY 2 cut(s) 130, 138
BstYI RGATCY 2 cut(s) 130, 138
BtgZI GCGATG 1 cut(s) 414
BtsCI GGATG 2 cut(s) 33, 421
BtsIMutI CAGTG 2 cut(s) 445, 522
Cac8I GCNNGC 1 cut(s) 73
Cfr13I GGNCC 1 cut(s) 606
Csp6I GTAC 2 cut(s) 303, 504
CviAII CATG 1 cut(s) 461
CviJI RGCY 9 cut(s) 5, 54, 71, 164, 215, 264, 293, 309, 436
CviKI_1 RGCY 9 cut(s) 5, 54, 71, 164, 215, 264, 293, 309, 436
CviQI GTAC 2 cut(s) 303, 504
DdeI CTNAG 2 cut(s) 146, 437
DpnI GATC 3 cut(s) 132, 140, 222
DpnII GATC 3 cut(s) 130, 138, 220
Eco130I CCWWGG 2 cut(s) 126, 576
Eco24I GRGCYC 1 cut(s) 438
Eco32I GATATC 1 cut(s) 614
Eco47I GGWCC 1 cut(s) 606
Eco57I CTGAAG 1 cut(s) 73
EcoRII CCWGG 1 cut(s) 198
EcoRV GATATC 1 cut(s) 614
EcoT14I CCWWGG 2 cut(s) 126, 576
EcoT38I GRGCYC 1 cut(s) 438
ErhI CCWWGG 2 cut(s) 126, 576
FaeI CATG 1 cut(s) 464
FaiI YATR 5 cut(s) 258, 368, 462, 501, 588
FatI CATG 1 cut(s) 460
FauI CCCGC 1 cut(s) 545
Fnu4HI GCNGC 2 cut(s) 186, 294
FokI GGATG 2 cut(s) 20, 428
FriOI GRGCYC 1 cut(s) 438
Fsp4HI GCNGC 2 cut(s) 186, 294
GluI GCNGC 2 cut(s) 186, 294
HapII CCGG 1 cut(s) 609
Hin1II CATG 1 cut(s) 464
HindIII AAGCTT 1 cut(s) 262
HinfI GANTC 1 cut(s) 572
HpaII CCGG 1 cut(s) 609
HphI GGTGA 1 cut(s) 165
Hpy166II GTNNAC 1 cut(s) 243
Hpy188I TCNGA 1 cut(s) 415
Hpy188III TCNNGA 1 cut(s) 13
Hpy8I GTNNAC 1 cut(s) 243
HpyAV CCTTC 3 cut(s) 19, 47, 180
HpyCH4V TGCA 4 cut(s) 61, 185, 509, 601
HpyF10VI GCNNNNNNNGC 3 cut(s) 99, 315, 324
HpyF3I CTNAG 2 cut(s) 146, 437
Hsp92II CATG 1 cut(s) 464
KpnI GGTACC 1 cut(s) 306
Kzo9I GATC 3 cut(s) 130, 138, 220
LpnPI CCDG 7 cut(s) 26, 85, 185, 189, 212, 319, 510
Lsp1109I GCAGC 2 cut(s) 197, 280
MaeIII GTNAC 3 cut(s) 149, 374, 467
MalI GATC 3 cut(s) 132, 140, 222
MbiI CCGCTC 1 cut(s) 552
MboI GATC 3 cut(s) 130, 138, 220
MboII GAAGA 3 cut(s) 79, 604, 608
MflI RGATCY 2 cut(s) 130, 138
MhlI GDGCHC 1 cut(s) 438
MluCI AATT 2 cut(s) 63, 115
MlyI GAGTC 1 cut(s) 566
MmeI TCCRAC 1 cut(s) 132
MnlI CCTC 5 cut(s) 154, 509, 526, 574, 597
MroXI GAANNNNTTC 2 cut(s) 20, 566
MseI TTAA 1 cut(s) 423
MspI CCGG 1 cut(s) 609
MspR9I CCNGG 1 cut(s) 200
MvaI CCWGG 1 cut(s) 200
MwoI GCNNNNNNNGC 3 cut(s) 99, 315, 324
NdeII GATC 3 cut(s) 130, 138, 220
NlaIII CATG 1 cut(s) 464
NlaIV GGNNCC 3 cut(s) 106, 132, 304
NmuCI GTSAC 1 cut(s) 374
PdmI GAANNNNTTC 2 cut(s) 20, 566
PkrI GCNGC 2 cut(s) 187, 295
PleI GAGTC 1 cut(s) 566
PpsI GAGTC 1 cut(s) 566
Psp6I CCWGG 1 cut(s) 198
PspGI CCWGG 1 cut(s) 198
PspN4I GGNNCC 3 cut(s) 106, 132, 304
PspPI GGNCC 1 cut(s) 606
PstI CTGCAG 1 cut(s) 603
PsuI RGATCY 2 cut(s) 130, 138
RsaI GTAC 2 cut(s) 304, 505
RsaNI GTAC 2 cut(s) 303, 504
SaqAI TTAA 1 cut(s) 423
SatI GCNGC 2 cut(s) 186, 294
Sau3AI GATC 3 cut(s) 130, 138, 220
Sau96I GGNCC 1 cut(s) 606
SchI GAGTC 1 cut(s) 566
ScrFI CCNGG 1 cut(s) 200
SduI GDGCHC 1 cut(s) 438
SetI ASST 6 cut(s) 56, 172, 266, 311, 452, 491
SfcI CTRYAG 2 cut(s) 276, 599
SinI GGWCC 1 cut(s) 606
Sse9I AATT 2 cut(s) 63, 115
SsiI CCGC 2 cut(s) 102, 552
StyD4I CCNGG 1 cut(s) 198
StyI CCWWGG 2 cut(s) 126, 576
TaqI TCGA 1 cut(s) 570
TasI AATT 2 cut(s) 63, 115
Tru1I TTAA 1 cut(s) 423
Tru9I TTAA 1 cut(s) 423
TscAI CASTG 2 cut(s) 445, 529
TseFI GTSAC 1 cut(s) 374
TseI GCWGC 2 cut(s) 185, 293
Tsp45I GTSAC 1 cut(s) 374
TspDTI ATGAA 3 cut(s) 22, 273, 346
TspGWI ACGGA 1 cut(s) 526
TspRI CASTG 2 cut(s) 445, 529
VpaK11BI GGWCC 1 cut(s) 606
XmnI GAANNNNTTC 2 cut(s) 20, 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.