FvH4_6g36960

1-acyl-sn-glycerol-3-phosphate acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001488
Physical Location & Seq
Forward (+)
29023575 .. 29027461
3887 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g36960.t1

Sequence Viewer

Length: 1122 bp
ATGGCGATTGCACTTGGATTCCTGTTTTCAGTGGTGGTGGTCCTCCATCCGCTAACCGTTCATCTCATTCCGGGGGTGCTGCTCTGCATCTCAGGCCTCTTTACCAATCTGGCTCAGGCGATTTGCTTCGTTTGTATTTGGCCGATTTCGGAGAATGCATACACAAGGTTAAACGGCGTCGTTAAAGAATTGGATTGGCGGGTTCTGATAAGCATCGTTAATTGGTGGGCTGGATTTGTGATCCTAGAGTGTATAGAGCAGGAAGAAACCAGTCATTTAAAGGGCGGAGTACATGAACTCGTACTATCCAATGCTACAAATTATAGCCATCGTCTCTTGGATCTGATTCTCGCTCAGTGGTCAGGTTTCATCGGCAGTTTAGTAGCTGTAGCAAAAACATCAGCAAGATACGGTTCGGTCATAGGATGGTCAATGTCGATTTCTGAATCTGTTTTTTCAAGATGTTGCGTCCATGATGCAAGTAAACTCAAGAGAGATCTTCAAGCTGCACAGATGCTTCCTGTGCCTAGCAAGGTTTTGAGTTCTGATATGAAGGATTTAGTCTATGCTGTAAGACGTGTGTACTCTGCTGTTCCAGACATTTTTGTTATAACAGTGGCTATTCCTAAAATTTCACCTGCGCTCACACTTGAAAGAGTAATTAAAGGGGGACATTCTGTGGTGCATCTGTACATCAAGCGGCATGCGACTGAAAAATGGCTTCAAACTGATGATGCTGTGGAGAAGTTGTGCACAGAAATACTGGCAGCCAAGGATGCATTATTGGACGAACATATAGCAGATCAAACTTTTGGTGATAAACGATTGGAAGCTATTGGTCGGCCAGCAAAGTGTTTCTTGGTTGTTATATCATTACTTGTGATGTGGGCTCTAAAGTTGAACTCTGTCTGCTGTTCTACACTGCTTATATTGGGTGCTGCCCTCCTAACTGGCCGGATGCTTGCTCTGTTTGGCTGTGGAGTGCTTTCGATGTTGCAGTCTTTAATGGGAATCGCTTTAGCAAGCATTACTTGGTCAGATCACCTCGAGCCCATCTGTGTCATGTTGATTCATATGGTTTGTGAATCGATCTCGGTGATGCCTGTGTGTAAAGAGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko00564 ko01100 ko01110 ko04072 map00561 map00564 map01100 map01110 map04072
Pfam Domains
Protein Families
Acyltransf_C Acyltransferase

Protein Analysis

374

Amino Acids

40.99

Weight (kDa)

6.85

Isoelectric Point (pI)

33.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyltransf_C PF16076 220 - 290 1.6e-09 Acyltransferase C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 611
AarI CACCTGC 1 cut(s) 646
Acc36I ACCTGC 1 cut(s) 646
AciI CCGC 4 cut(s) 50, 199, 285, 700
AclWI GGATC 2 cut(s) 235, 348
AcoI YGGCCR 3 cut(s) 140, 842, 952
AcsI RAATTY 1 cut(s) 630
AcyI GRCGYC 1 cut(s) 177
AfaI GTAC 4 cut(s) 291, 303, 584, 692
AflIII ACRYGT 1 cut(s) 577
AgsI TTSAA 5 cut(s) 459, 503, 653, 725, 901
AjiI CACGTC 1 cut(s) 578
AluBI AGCT 3 cut(s) 386, 506, 833
AluI AGCT 3 cut(s) 386, 506, 833
Alw21I GWGCWC 1 cut(s) 755
Alw26I GTCTC 1 cut(s) 338
Alw44I GTGCAC 1 cut(s) 751
AlwI GGATC 2 cut(s) 235, 348
Ama87I CYCGRG 1 cut(s) 1046
AoxI GGCC 4 cut(s) 94, 140, 842, 952
ApaLI GTGCAC 1 cut(s) 751
ApeKI GCWGC 4 cut(s) 79, 506, 767, 938
ApoI RAATTY 1 cut(s) 630
AspLEI GCGC 1 cut(s) 643
AspS9I GGNCC 1 cut(s) 40
AsuC2I CCSGG 1 cut(s) 72
AsuHPI GGTGA 4 cut(s) 627, 827, 1034, 1108
AvaI CYCGRG 1 cut(s) 1046
AvaII GGWCC 1 cut(s) 40
BaeGI GKGCMC 1 cut(s) 755
BanII GRGCYC 2 cut(s) 892, 1053
Bbv12I GWGCWC 1 cut(s) 755
BbvI GCAGC 4 cut(s) 66, 493, 779, 925
BccI CCATC 4 cut(s) 54, 336, 420, 1061
BceAI ACGGC 1 cut(s) 190
BcnI CCSGG 1 cut(s) 72
BcoDI GTCTC 1 cut(s) 338
BfaI CTAG 2 cut(s) 245, 528
BfmI CTRYAG 1 cut(s) 387
BfuAI ACCTGC 1 cut(s) 646
BglII AGATCT 1 cut(s) 496
BisI GCNGC 5 cut(s) 80, 507, 701, 768, 939
BlsI GCNGC 5 cut(s) 81, 508, 702, 769, 940
Bme1390I CCNGG 1 cut(s) 72
Bme18I GGWCC 1 cut(s) 40
BmeT110I CYCGRG 1 cut(s) 1046
BmgBI CACGTC 1 cut(s) 578
BmgT120I GGNCC 1 cut(s) 40
BmrFI CCNGG 1 cut(s) 72
BmsI GCATC 9 cut(s) 96, 222, 466, 504, 694, 724, 766, 948, 1089
Bpu10I CCTNAGC 1 cut(s) 114
BpuEI CTTGAG 1 cut(s) 473
BpuMI CCSGG 1 cut(s) 72
Bsa29I ATCGAT 1 cut(s) 1088
BsaBI GATNNNNATC 1 cut(s) 212
BsaHI GRCGYC 1 cut(s) 177
BsaJI CCNNGG 2 cut(s) 71, 771
BsaXI ACNNNNNCTCC 2 cut(s) 734, 764
Bse1I ACTGG 3 cut(s) 270, 768, 955
Bse8I GATNNNNATC 1 cut(s) 212
BseCI ATCGAT 1 cut(s) 1088
BseDI CCNNGG 2 cut(s) 71, 771
BseGI GGATG 4 cut(s) 46, 431, 781, 963
BseJI GATNNNNATC 1 cut(s) 212
BseMII CTCAG 3 cut(s) 105, 128, 368
BseNI ACTGG 3 cut(s) 270, 768, 955
BseSI GKGCMC 1 cut(s) 755
BseXI GCAGC 4 cut(s) 66, 493, 779, 925
BsgI GTGCAG 1 cut(s) 492
BshFI GGCC 4 cut(s) 96, 142, 844, 954
BshVI ATCGAT 1 cut(s) 1088
BsiHKAI GWGCWC 1 cut(s) 755
BsiHKCI CYCGRG 1 cut(s) 1046
BsiSI CCGG 2 cut(s) 71, 955
BslFI GGGAC 1 cut(s) 684
BsmAI GTCTC 1 cut(s) 338
BsmBI CGTCTC 1 cut(s) 338
BsmFI GGGAC 1 cut(s) 684
BsmI GAATGC 1 cut(s) 160
BsnI GGCC 4 cut(s) 96, 142, 844, 954
BsoBI CYCGRG 1 cut(s) 1046
Bsp1286I GDGCHC 3 cut(s) 755, 892, 1053
Bsp1407I TGTACA 1 cut(s) 690
Bsp143I GATC 6 cut(s) 240, 340, 496, 802, 1039, 1089
BspACI CCGC 4 cut(s) 50, 199, 285, 700
BspANI GGCC 4 cut(s) 96, 142, 844, 954
BspCNI CTCAG 3 cut(s) 104, 127, 367
BspDI ATCGAT 1 cut(s) 1088
BspMI ACCTGC 1 cut(s) 646
BspPI GGATC 2 cut(s) 235, 348
BsrGI TGTACA 1 cut(s) 690
BsrI ACTGG 3 cut(s) 270, 768, 955
BssECI CCNNGG 2 cut(s) 71, 771
BssMI GATC 6 cut(s) 240, 340, 496, 802, 1039, 1089
BssNI GRCGYC 1 cut(s) 177
BssT1I CCWWGG 1 cut(s) 771
Bst4CI ACNGT 3 cut(s) 58, 413, 616
BstACI GRCGYC 1 cut(s) 177
BstAUI TGTACA 1 cut(s) 690
BstC8I GCNNGC 4 cut(s) 705, 846, 963, 1024
BstDEI CTNAG 3 cut(s) 91, 114, 354
BstF5I GGATG 4 cut(s) 46, 431, 781, 963
BstHHI GCGC 1 cut(s) 643
BstKTI GATC 6 cut(s) 243, 343, 499, 805, 1042, 1092
BstMAI GTCTC 1 cut(s) 338
BstMBI GATC 6 cut(s) 240, 340, 496, 802, 1039, 1089
BstMWI GCNNNNNNNGC 3 cut(s) 93, 523, 776
BstNSI RCATGY 1 cut(s) 707
BstSCI CCNGG 1 cut(s) 70
BstSFI CTRYAG 1 cut(s) 387
BstSLI GKGCMC 1 cut(s) 755
BstV1I GCAGC 4 cut(s) 66, 493, 779, 925
BstX2I RGATCY 2 cut(s) 340, 496
BstYI RGATCY 2 cut(s) 340, 496
Bsu15I ATCGAT 1 cut(s) 1088
BsuRI GGCC 4 cut(s) 96, 142, 844, 954
BsuTUI ATCGAT 1 cut(s) 1088
BtrI CACGTC 1 cut(s) 578
BtsCI GGATG 4 cut(s) 46, 431, 781, 963
BtsI GCAGTG 1 cut(s) 920
BtsIMutI CAGTG 4 cut(s) 36, 362, 621, 920
BveI ACCTGC 1 cut(s) 646
Cac8I GCNNGC 4 cut(s) 705, 846, 963, 1024
CfoI GCGC 1 cut(s) 643
Cfr13I GGNCC 1 cut(s) 40
ClaI ATCGAT 1 cut(s) 1088
CseI GACGC 2 cut(s) 166, 457
Csp6I GTAC 4 cut(s) 290, 302, 583, 691
CviAII CATG 4 cut(s) 293, 473, 704, 1063
CviQI GTAC 4 cut(s) 290, 302, 583, 691
DdeI CTNAG 3 cut(s) 91, 114, 354
DpnI GATC 6 cut(s) 242, 342, 498, 804, 1041, 1091
DpnII GATC 6 cut(s) 240, 340, 496, 802, 1039, 1089
DraI TTTAAA 1 cut(s) 279
EaeI YGGCCR 3 cut(s) 140, 842, 952
EciI GGCGGA 1 cut(s) 300
Eco130I CCWWGG 1 cut(s) 771
Eco147I AGGCCT 1 cut(s) 96
Eco24I GRGCYC 2 cut(s) 892, 1053
Eco47I GGWCC 1 cut(s) 40
Eco88I CYCGRG 1 cut(s) 1046
EcoT14I CCWWGG 1 cut(s) 771
EcoT22I ATGCAT 2 cut(s) 160, 781
EcoT38I GRGCYC 2 cut(s) 892, 1053
ErhI CCWWGG 1 cut(s) 771
Esp3I CGTCTC 1 cut(s) 338
FaeI CATG 4 cut(s) 296, 476, 707, 1066
FalI AAGNNNNNCTT 4 cut(s) 842, 874, 1015, 1047
FaqI GGGAC 1 cut(s) 684
FatI CATG 4 cut(s) 292, 472, 703, 1062
FauI CCCGC 1 cut(s) 192
FauNDI CATATG 1 cut(s) 1074
Fnu4HI GCNGC 5 cut(s) 80, 507, 701, 768, 939
FokI GGATG 4 cut(s) 33, 438, 788, 970
FriOI GRGCYC 2 cut(s) 892, 1053
Fsp4HI GCNGC 5 cut(s) 80, 507, 701, 768, 939
FspBI CTAG 2 cut(s) 245, 528
GlaI GCGC 1 cut(s) 642
GluI GCNGC 5 cut(s) 80, 507, 701, 768, 939
HaeIII GGCC 4 cut(s) 96, 142, 844, 954
HapII CCGG 2 cut(s) 71, 955
HgaI GACGC 2 cut(s) 166, 457
HhaI GCGC 1 cut(s) 643
Hin1I GRCGYC 1 cut(s) 177
Hin1II CATG 4 cut(s) 296, 476, 707, 1066
Hin6I GCGC 1 cut(s) 641
HinP1I GCGC 1 cut(s) 641
HinfI GANTC 6 cut(s) 18, 346, 446, 1011, 1069, 1085
HpaII CCGG 2 cut(s) 71, 955
HphI GGTGA 4 cut(s) 627, 827, 1034, 1108
Hpy166II GTNNAC 3 cut(s) 485, 583, 753
Hpy188I TCNGA 6 cut(s) 151, 207, 345, 445, 547, 1039
Hpy188III TCNNGA 3 cut(s) 459, 490, 596
Hpy8I GTNNAC 3 cut(s) 485, 583, 753
Hpy99I CGWCG 1 cut(s) 182
HpyAV CCTTC 1 cut(s) 547
HpyCH4III ACNGT 3 cut(s) 58, 413, 616
HpyCH4IV ACGT 1 cut(s) 577
HpyCH4V TGCA 9 cut(s) 11, 87, 158, 479, 509, 685, 753, 779, 997
HpyF10VI GCNNNNNNNGC 3 cut(s) 93, 523, 776
HpyF3I CTNAG 3 cut(s) 91, 114, 354
HpySE526I ACGT 1 cut(s) 577
Hsp92I GRCGYC 1 cut(s) 177
Hsp92II CATG 4 cut(s) 296, 476, 707, 1066
HspAI GCGC 1 cut(s) 641
Kzo9I GATC 6 cut(s) 240, 340, 496, 802, 1039, 1089
Lsp1109I GCAGC 4 cut(s) 66, 493, 779, 925
LweI GCATC 9 cut(s) 96, 222, 466, 504, 694, 724, 766, 948, 1089
MaeI CTAG 2 cut(s) 245, 528
MaeII ACGT 1 cut(s) 577
MalI GATC 6 cut(s) 242, 342, 498, 804, 1041, 1091
MboI GATC 6 cut(s) 240, 340, 496, 802, 1039, 1089
MboII GAAGA 2 cut(s) 275, 491
MflI RGATCY 2 cut(s) 340, 496
MhlI GDGCHC 3 cut(s) 755, 892, 1053
MluCI AATT 5 cut(s) 188, 220, 319, 630, 660
MnlI CCTC 4 cut(s) 53, 107, 953, 1055
Mph1103I ATGCAT 2 cut(s) 160, 781
MseI TTAA 6 cut(s) 170, 183, 219, 278, 663, 1004
MspI CCGG 2 cut(s) 71, 955
MspR9I CCNGG 1 cut(s) 72
Mva1269I GAATGC 1 cut(s) 160
MwoI GCNNNNNNNGC 3 cut(s) 93, 523, 776
NciI CCSGG 1 cut(s) 72
NdeI CATATG 1 cut(s) 1074
NdeII GATC 6 cut(s) 240, 340, 496, 802, 1039, 1089
NlaIII CATG 4 cut(s) 296, 476, 707, 1066
NsiI ATGCAT 2 cut(s) 160, 781
NspI RCATGY 1 cut(s) 707
PaeI GCATGC 1 cut(s) 707
PaeR7I CTCGAG 1 cut(s) 1046
PaqCI CACCTGC 1 cut(s) 646
PceI AGGCCT 1 cut(s) 96
PctI GAATGC 1 cut(s) 160
PfeI GAWTC 6 cut(s) 18, 346, 446, 1011, 1069, 1085
PkrI GCNGC 5 cut(s) 81, 508, 702, 769, 940
PsiI TTATAA 1 cut(s) 611
PspPI GGNCC 1 cut(s) 40
PspXI VCTCGAGB 1 cut(s) 1046
PsuI RGATCY 2 cut(s) 340, 496
RsaI GTAC 4 cut(s) 291, 303, 584, 692
RsaNI GTAC 4 cut(s) 290, 302, 583, 691
SaqAI TTAA 6 cut(s) 170, 183, 219, 278, 663, 1004
SatI GCNGC 5 cut(s) 80, 507, 701, 768, 939
Sau3AI GATC 6 cut(s) 240, 340, 496, 802, 1039, 1089
Sau96I GGNCC 1 cut(s) 40
ScrFI CCNGG 1 cut(s) 72
SduI GDGCHC 3 cut(s) 755, 892, 1053
SetI ASST 9 cut(s) 170, 367, 388, 508, 537, 580, 640, 835, 1047
SfaNI GCATC 9 cut(s) 96, 222, 466, 504, 694, 724, 766, 948, 1089
SfcI CTRYAG 1 cut(s) 387
Sfr274I CTCGAG 1 cut(s) 1046
SinI GGWCC 1 cut(s) 40
SlaI CTCGAG 1 cut(s) 1046
SmlI CTYRAG 2 cut(s) 488, 1046
SmoI CTYRAG 2 cut(s) 488, 1046
SphI GCATGC 1 cut(s) 707
Sse9I AATT 5 cut(s) 188, 220, 319, 630, 660
SseBI AGGCCT 1 cut(s) 96
SsiI CCGC 4 cut(s) 50, 199, 285, 700
SspMI CTAG 2 cut(s) 245, 528
StuI AGGCCT 1 cut(s) 96
StyD4I CCNGG 1 cut(s) 70
StyI CCWWGG 1 cut(s) 771
TaaI ACNGT 3 cut(s) 58, 413, 616
TaiI ACGT 1 cut(s) 580
TaqI TCGA 4 cut(s) 437, 989, 1047, 1088
TaqII GACCGA 1 cut(s) 406
TasI AATT 5 cut(s) 188, 220, 319, 630, 660
TatI WGTACW 3 cut(s) 289, 582, 690
TauI GCSGC 1 cut(s) 703
TfiI GAWTC 6 cut(s) 18, 346, 446, 1011, 1069, 1085
Tru1I TTAA 6 cut(s) 170, 183, 219, 278, 663, 1004
Tru9I TTAA 6 cut(s) 170, 183, 219, 278, 663, 1004
TscAI CASTG 4 cut(s) 36, 362, 621, 927
TseI GCWGC 4 cut(s) 79, 506, 767, 938
TspDTI ATGAA 5 cut(s) 50, 309, 358, 566, 1061
TspRI CASTG 4 cut(s) 36, 362, 621, 927
VneI GTGCAC 1 cut(s) 751
VpaK11BI GGWCC 1 cut(s) 40
XapI RAATTY 1 cut(s) 630
XceI RCATGY 1 cut(s) 707
XhoI CTCGAG 1 cut(s) 1046
XspI CTAG 2 cut(s) 245, 528
Zsp2I ATGCAT 2 cut(s) 160, 781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.