Rw2G038410

1-acyl-sn-glycerol-3-phosphate acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0001488
Physical Location & Seq
Forward (+)
63360316 .. 63366117
5802 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G038410.1

Sequence Viewer

Length: 852 bp
ATGTTAAATTGGATCCTAGAGTGCATAGAGCAGGAAAACAGTCATTTAAAGGGTGAAGAGCATGAACTTGTCATATCCAGTGCTAGAAATGATGCCAATCCTCTTCTTGAATTGGTTCTCGCTCAGTGGTCAGGTTGCCTTGGCAGTTTATTAGCTGTAATAAAGACATCAGCAAGATATATTCTGTCAGATCTAAAGGACTTCCCTCAGCCCTTTTGGTTTTCTGTTGTCCTAGAAAGAACTGGTTTTACTCAGGGAGAGCTTCTAGCTGCACAGAGGCTTCCTGTCCCTAGCAAGGTTTTGAGTCCTGATACTAAGACGTGCGTACTCTGTTGTTCCAGCCATTTTGTTATAACAGTGGCTATTCCTAAAACTTCACCTCCAACTACAGTTGAAAGTGTAATTAAAGGGGGACCTTCTGTGGTGCATGTGTACATTAAAAGGCATGCGACTAAAAAATGGCCTGAAACTGATGATGCTGTTGAAAAGTGGTGCACAGAAATACTTGAAGCCGAGGATGCATTATTGGACGAACATATAGCGGAACGAACTTTTGTTGTTGAAGGATTGCAAACTATTGGTCAGCCACTAAAGTGTTTCTTGGTTATATCTCTAATTGTGTTGTGGGCTCTAAAGTTCAACTTTGTCTGCTGTTCCACCCTGCTTGTATTGAGTGCTGCCCTCTTTACTGGTCAGATGCTTACTCTGTTCGGCTGTGGAGTTCTTTCGCTGTTGCAATGTTTCATGGAAGCCGCTATAGCAAACATTAGTTGGTCAAAGTACCTCAAGCCCATCTGTGGCTGGTTGATTTACAATCTTGGAGAGTTGTGTTTGTTGCTCCCTTGTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko00564 ko01100 ko01110 ko04072 map00561 map00564 map01100 map01110 map04072
Pfam Domains
Protein Families
Acyltransf_C Acyltransferase

Protein Analysis

283

Amino Acids

31.37

Weight (kDa)

5.31

Isoelectric Point (pI)

36.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyltransf_C PF16076 134 - 204 1.1e-12 Acyltransferase C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 353
AciI CCGC 2 cut(s) 542, 753
AclWI GGATC 2 cut(s) 7, 20
AfaI GTAC 3 cut(s) 327, 434, 782
AfiI CCNNNNNNNGG 2 cut(s) 295, 797
AgsI TTSAA 6 cut(s) 110, 395, 485, 509, 563, 640
AjiI CACGTC 1 cut(s) 321
AleI CACNNNNGTG 1 cut(s) 592
AluBI AGCT 3 cut(s) 155, 262, 269
AluI AGCT 3 cut(s) 155, 262, 269
Alw21I GWGCWC 1 cut(s) 497
Alw44I GTGCAC 1 cut(s) 493
AlwI GGATC 2 cut(s) 7, 20
AoxI GGCC 1 cut(s) 461
ApaLI GTGCAC 1 cut(s) 493
ApeKI GCWGC 2 cut(s) 269, 677
ArsI GACNNNNNNTTYG 2 cut(s) 565, 597
Asp700I GAANNNNTTC 1 cut(s) 114
AspS9I GGNCC 1 cut(s) 413
AsuHPI GGTGA 2 cut(s) 65, 369
AvaII GGWCC 1 cut(s) 413
BaeGI GKGCMC 1 cut(s) 497
BamHI GGATCC 1 cut(s) 12
BanII GRGCYC 1 cut(s) 631
Bbv12I GWGCWC 1 cut(s) 497
BbvCI CCTCAGC 1 cut(s) 207
BbvI GCAGC 2 cut(s) 256, 664
BccI CCATC 1 cut(s) 800
BfaI CTAG 5 cut(s) 17, 84, 233, 266, 291
BfmI CTRYAG 2 cut(s) 387, 756
BglII AGATCT 1 cut(s) 190
BisI GCNGC 3 cut(s) 270, 678, 753
BlsI GCNGC 3 cut(s) 271, 679, 754
Bme18I GGWCC 1 cut(s) 413
BmgBI CACGTC 1 cut(s) 321
BmgT120I GGNCC 1 cut(s) 413
BmiI GGNNCC 2 cut(s) 14, 414
BmsI GCATC 4 cut(s) 82, 466, 508, 687
Bpu10I CCTNAGC 1 cut(s) 207
BpuEI CTTGAG 1 cut(s) 770
BsaBI GATNNNNATC 1 cut(s) 96
BsaJI CCNNGG 2 cut(s) 139, 513
BsaXI ACNNNNNCTCC 2 cut(s) 364, 394
Bsc4I CCNNNNNNNGG 2 cut(s) 295, 797
Bse1I ACTGG 3 cut(s) 78, 247, 694
Bse3DI GCAATG 1 cut(s) 743
Bse8I GATNNNNATC 1 cut(s) 96
BseDI CCNNGG 2 cut(s) 139, 513
BseGI GGATG 1 cut(s) 523
BseJI GATNNNNATC 1 cut(s) 96
BseLI CCNNNNNNNGG 2 cut(s) 295, 797
BseMI GCAATG 1 cut(s) 743
BseMII CTCAG 3 cut(s) 137, 221, 266
BseNI ACTGG 3 cut(s) 78, 247, 694
BseSI GKGCMC 1 cut(s) 497
BseXI GCAGC 2 cut(s) 256, 664
BsgI GTGCAG 1 cut(s) 255
BshFI GGCC 1 cut(s) 463
BsiHKAI GWGCWC 1 cut(s) 497
BslFI GGGAC 2 cut(s) 272, 426
BslI CCNNNNNNNGG 2 cut(s) 295, 797
BsmFI GGGAC 2 cut(s) 272, 426
BsnI GGCC 1 cut(s) 463
Bsp1286I GDGCHC 2 cut(s) 497, 631
Bsp1407I TGTACA 1 cut(s) 432
Bsp143I GATC 2 cut(s) 12, 190
BspACI CCGC 2 cut(s) 542, 753
BspANI GGCC 1 cut(s) 463
BspCNI CTCAG 3 cut(s) 136, 220, 265
BspLI GGNNCC 2 cut(s) 14, 414
BspPI GGATC 2 cut(s) 7, 20
BspQI GCTCTTC 1 cut(s) 51
BsrDI GCAATG 1 cut(s) 743
BsrGI TGTACA 1 cut(s) 432
BsrI ACTGG 3 cut(s) 78, 247, 694
BssECI CCNNGG 2 cut(s) 139, 513
BssMI GATC 2 cut(s) 12, 190
BssT1I CCWWGG 1 cut(s) 139
Bst4CI ACNGT 3 cut(s) 41, 358, 391
Bst6I CTCTTC 2 cut(s) 51, 108
BstAUI TGTACA 1 cut(s) 432
BstC8I GCNNGC 1 cut(s) 447
BstDEI CTNAG 4 cut(s) 123, 207, 252, 315
BstF5I GGATG 1 cut(s) 523
BstKTI GATC 2 cut(s) 15, 193
BstMBI GATC 2 cut(s) 12, 190
BstMWI GCNNNNNNNGC 2 cut(s) 518, 758
BstNSI RCATGY 2 cut(s) 431, 449
BstSFI CTRYAG 2 cut(s) 387, 756
BstSLI GKGCMC 1 cut(s) 497
BstV1I GCAGC 2 cut(s) 256, 664
BstX2I RGATCY 2 cut(s) 12, 190
BstYI RGATCY 2 cut(s) 12, 190
BsuRI GGCC 1 cut(s) 463
BtrI CACGTC 1 cut(s) 321
BtsCI GGATG 1 cut(s) 523
BtsIMutI CAGTG 3 cut(s) 85, 131, 363
Cac8I GCNNGC 1 cut(s) 447
Cfr13I GGNCC 1 cut(s) 413
Csp6I GTAC 3 cut(s) 326, 433, 781
CspCI CAANNNNNGTGG 2 cut(s) 646, 681
CviAII CATG 4 cut(s) 62, 428, 446, 745
CviQI GTAC 3 cut(s) 326, 433, 781
DdeI CTNAG 4 cut(s) 123, 207, 252, 315
DpnI GATC 2 cut(s) 14, 192
DpnII GATC 2 cut(s) 12, 190
DraI TTTAAA 1 cut(s) 48
Eam1104I CTCTTC 2 cut(s) 51, 108
EarI CTCTTC 2 cut(s) 51, 108
Eco130I CCWWGG 1 cut(s) 139
Eco24I GRGCYC 1 cut(s) 631
Eco47I GGWCC 1 cut(s) 413
EcoO109I RGGNCCY 1 cut(s) 413
EcoT14I CCWWGG 1 cut(s) 139
EcoT22I ATGCAT 1 cut(s) 523
EcoT38I GRGCYC 1 cut(s) 631
ErhI CCWWGG 1 cut(s) 139
FaeI CATG 4 cut(s) 65, 431, 449, 748
FalI AAGNNNNNCTT 4 cut(s) 584, 616, 626, 658
FaqI GGGAC 2 cut(s) 272, 426
FatI CATG 4 cut(s) 61, 427, 445, 744
Fnu4HI GCNGC 3 cut(s) 270, 678, 753
FokI GGATG 1 cut(s) 530
FriOI GRGCYC 1 cut(s) 631
Fsp4HI GCNGC 3 cut(s) 270, 678, 753
FspBI CTAG 5 cut(s) 17, 84, 233, 266, 291
GluI GCNGC 3 cut(s) 270, 678, 753
HaeIII GGCC 1 cut(s) 463
Hin1II CATG 4 cut(s) 65, 431, 449, 748
HinfI GANTC 1 cut(s) 304
HphI GGTGA 2 cut(s) 65, 369
Hpy166II GTNNAC 2 cut(s) 433, 495
Hpy188I TCNGA 2 cut(s) 190, 696
Hpy188III TCNNGA 2 cut(s) 107, 308
Hpy8I GTNNAC 2 cut(s) 433, 495
HpyAV CCTTC 2 cut(s) 426, 557
HpyCH4III ACNGT 3 cut(s) 41, 358, 391
HpyCH4IV ACGT 1 cut(s) 320
HpyCH4V TGCA 7 cut(s) 24, 272, 427, 495, 521, 571, 736
HpyF10VI GCNNNNNNNGC 2 cut(s) 518, 758
HpyF3I CTNAG 4 cut(s) 123, 207, 252, 315
HpySE526I ACGT 1 cut(s) 320
Hsp92II CATG 4 cut(s) 65, 431, 449, 748
Kzo9I GATC 2 cut(s) 12, 190
LguI GCTCTTC 1 cut(s) 51
LmnI GCTCC 1 cut(s) 843
Lsp1109I GCAGC 2 cut(s) 256, 664
LweI GCATC 4 cut(s) 82, 466, 508, 687
MaeI CTAG 5 cut(s) 17, 84, 233, 266, 291
MaeII ACGT 1 cut(s) 320
MalI GATC 2 cut(s) 14, 192
MboI GATC 2 cut(s) 12, 190
MboII GAAGA 2 cut(s) 68, 95
MflI RGATCY 2 cut(s) 12, 190
MhlI GDGCHC 2 cut(s) 497, 631
MluCI AATT 4 cut(s) 7, 110, 402, 615
MlyI GAGTC 1 cut(s) 313
MmeI TCCRAC 1 cut(s) 407
MnlI CCTC 7 cut(s) 111, 216, 270, 390, 508, 692, 794
Mph1103I ATGCAT 1 cut(s) 523
MroXI GAANNNNTTC 1 cut(s) 114
MseI TTAA 5 cut(s) 5, 47, 405, 438, 850
MslI CAYNNNNRTG 1 cut(s) 592
MwoI GCNNNNNNNGC 2 cut(s) 518, 758
NdeII GATC 2 cut(s) 12, 190
NlaIII CATG 4 cut(s) 65, 431, 449, 748
NlaIV GGNNCC 2 cut(s) 14, 414
NmeAIII GCCGAG 1 cut(s) 538
NsiI ATGCAT 1 cut(s) 523
NspI RCATGY 2 cut(s) 431, 449
OliI CACNNNNGTG 1 cut(s) 592
PaeI GCATGC 1 cut(s) 449
PciSI GCTCTTC 1 cut(s) 51
PdmI GAANNNNTTC 1 cut(s) 114
PkrI GCNGC 3 cut(s) 271, 679, 754
PleI GAGTC 1 cut(s) 312
PpsI GAGTC 1 cut(s) 312
PpuMI RGGWCCY 1 cut(s) 413
PsiI TTATAA 1 cut(s) 353
Psp5II RGGWCCY 1 cut(s) 413
PspN4I GGNNCC 2 cut(s) 14, 414
PspPI GGNCC 1 cut(s) 413
PspPPI RGGWCCY 1 cut(s) 413
PsrI GAACNNNNNNTAC 2 cut(s) 232, 264
PsuI RGATCY 2 cut(s) 12, 190
RsaI GTAC 3 cut(s) 327, 434, 782
RsaNI GTAC 3 cut(s) 326, 433, 781
RseI CAYNNNNRTG 1 cut(s) 592
SapI GCTCTTC 1 cut(s) 51
SaqAI TTAA 5 cut(s) 5, 47, 405, 438, 850
SatI GCNGC 3 cut(s) 270, 678, 753
Sau3AI GATC 2 cut(s) 12, 190
Sau96I GGNCC 1 cut(s) 413
SchI GAGTC 1 cut(s) 313
SduI GDGCHC 2 cut(s) 497, 631
SetI ASST 9 cut(s) 136, 157, 264, 271, 300, 323, 382, 418, 786
SfaNI GCATC 4 cut(s) 82, 466, 508, 687
SfcI CTRYAG 2 cut(s) 387, 756
SinI GGWCC 1 cut(s) 413
SmiMI CAYNNNNRTG 1 cut(s) 592
SmlI CTYRAG 1 cut(s) 785
SmoI CTYRAG 1 cut(s) 785
SphI GCATGC 1 cut(s) 449
Sse9I AATT 4 cut(s) 7, 110, 402, 615
SsiI CCGC 2 cut(s) 542, 753
SspMI CTAG 5 cut(s) 17, 84, 233, 266, 291
StyI CCWWGG 1 cut(s) 139
TaaI ACNGT 3 cut(s) 41, 358, 391
TaiI ACGT 1 cut(s) 323
TasI AATT 4 cut(s) 7, 110, 402, 615
TatI WGTACW 1 cut(s) 432
TauI GCSGC 1 cut(s) 755
Tru1I TTAA 5 cut(s) 5, 47, 405, 438, 850
Tru9I TTAA 5 cut(s) 5, 47, 405, 438, 850
TscAI CASTG 3 cut(s) 85, 131, 363
TseI GCWGC 2 cut(s) 269, 677
TspDTI ATGAA 2 cut(s) 78, 733
TspRI CASTG 3 cut(s) 85, 131, 363
VneI GTGCAC 1 cut(s) 493
VpaK11BI GGWCC 1 cut(s) 413
XceI RCATGY 2 cut(s) 431, 449
XmnI GAANNNNTTC 1 cut(s) 114
XspI CTAG 5 cut(s) 17, 84, 233, 266, 291
Zsp2I ATGCAT 1 cut(s) 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.