Rorug04G0357400

1-acyl-sn-glycerol-3-phosphate acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001488
Physical Location & Seq
Forward (+)
52945442 .. 52946537
1096 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0357400.1

Sequence Viewer

Length: 435 bp
ATGGCAGTTTGCAGCGGCAACAAACCTCAAAAGATGGCGACTTTGCAGAAGTTCAAGCTCCTAGCTCTGCACTGCGGGGCGGCCCAAAGCCCAACGCGGAGCCCAAGAACGAGTCCGTTGATCCAGCTCCCTCGCCGGAAACCCAGCCTGCTGATGCTTCTTAGCCGGAGCGGGAGCCGGCGATCGACGAGACGACAGGACCAGCCGGTGCCTGTGCAGCCGCCGCCGGAGAGGAGGAACAGCCTGAAGGACCTGTTTGTGTCGTCCCCGCCTTTTGAAGAGAGTGAGAAAATAGAGAAGCGGCGAGAGTTTGGGTTGGTAGTGGTAGCCGGTGGAGTTGGACCGGGTTCGCCTAGACCGGGGTGGACCGGTTTCCGGTACAAGTCGTTGTTGAGGAGGGCTTGGCGTCCTGTGTTGGTTACTATTCCTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko00564 ko01100 ko01110 ko04072 map00561 map00564 map01100 map01110 map04072
Pfam Domains
Protein Families
Acyltransf_C Acyltransferase

Protein Analysis

144

Amino Acids

16.12

Weight (kDa)

11.61

Isoelectric Point (pI)

102.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 208
AccBSI CCGCTC 1 cut(s) 171
AccII CGCG 1 cut(s) 97
AciI CCGC 9 cut(s) 15, 75, 80, 97, 171, 221, 224, 269, 301
AclWI GGATC 1 cut(s) 115
AcuI CTGAAG 1 cut(s) 266
AcyI GRCGYC 1 cut(s) 406
AfaI GTAC 1 cut(s) 380
AfiI CCNNNNNNNGG 2 cut(s) 359, 375
AgeI ACCGGT 1 cut(s) 368
AgsI TTSAA 2 cut(s) 55, 278
AluBI AGCT 3 cut(s) 58, 65, 127
AluI AGCT 3 cut(s) 58, 65, 127
Alw26I GTCTC 1 cut(s) 184
AlwI GGATC 1 cut(s) 115
AoxI GGCC 1 cut(s) 81
ApeKI GCWGC 2 cut(s) 12, 217
AsiGI ACCGGT 1 cut(s) 368
AspS9I GGNCC 5 cut(s) 82, 199, 250, 341, 366
AsuC2I CCSGG 2 cut(s) 345, 360
AvaII GGWCC 4 cut(s) 199, 250, 341, 366
BanI GGYRCC 1 cut(s) 208
BanII GRGCYC 1 cut(s) 104
BbvI GCAGC 2 cut(s) 24, 229
BccI CCATC 1 cut(s) 28
BcnI CCSGG 2 cut(s) 345, 360
BcoDI GTCTC 1 cut(s) 184
BfaI CTAG 2 cut(s) 62, 354
BisI GCNGC 7 cut(s) 13, 16, 81, 218, 221, 224, 302
BlsI GCNGC 7 cut(s) 14, 17, 82, 219, 222, 225, 303
Bme1390I CCNGG 2 cut(s) 345, 360
Bme18I GGWCC 4 cut(s) 199, 250, 341, 366
BmgT120I GGNCC 5 cut(s) 82, 199, 250, 341, 366
BmiI GGNNCC 3 cut(s) 101, 176, 210
BmrFI CCNGG 2 cut(s) 345, 360
BmsI GCATC 1 cut(s) 144
BpuMI CCSGG 2 cut(s) 345, 360
BsaHI GRCGYC 1 cut(s) 406
BsaJI CCNNGG 1 cut(s) 359
BsaWI WCCGGW 2 cut(s) 368, 375
Bsc4I CCNNNNNNNGG 2 cut(s) 359, 375
Bse118I RCCGGY 4 cut(s) 177, 205, 329, 368
BseDI CCNNGG 1 cut(s) 359
BseLI CCNNNNNNNGG 2 cut(s) 359, 375
BseMII CTCAG 1 cut(s) 420
BseRI GAGGAG 2 cut(s) 247, 409
BseXI GCAGC 2 cut(s) 24, 229
BseYI CCCAGC 1 cut(s) 143
BsgI GTGCAG 2 cut(s) 53, 236
Bsh1236I CGCG 1 cut(s) 97
Bsh1285I CGRYCG 1 cut(s) 185
BshFI GGCC 1 cut(s) 83
BshNI GGYRCC 1 cut(s) 208
BshTI ACCGGT 1 cut(s) 368
BsiEI CGRYCG 1 cut(s) 185
BslFI GGGAC 1 cut(s) 250
BslI CCNNNNNNNGG 2 cut(s) 359, 375
BsmAI GTCTC 1 cut(s) 184
BsmBI CGTCTC 1 cut(s) 184
BsmFI GGGAC 1 cut(s) 250
BsnI GGCC 1 cut(s) 83
Bsp1286I GDGCHC 1 cut(s) 104
Bsp143I GATC 2 cut(s) 120, 182
BspACI CCGC 9 cut(s) 15, 75, 80, 97, 171, 221, 224, 269, 301
BspANI GGCC 1 cut(s) 83
BspCNI CTCAG 1 cut(s) 421
BspFNI CGCG 1 cut(s) 97
BspLI GGNNCC 3 cut(s) 101, 176, 210
BspPI GGATC 1 cut(s) 115
BspT107I GGYRCC 1 cut(s) 208
BsrBI CCGCTC 1 cut(s) 171
BsrFI RCCGGY 4 cut(s) 177, 205, 329, 368
BssAI RCCGGY 4 cut(s) 177, 205, 329, 368
BssECI CCNNGG 1 cut(s) 359
BssMI GATC 2 cut(s) 120, 182
BssNI GRCGYC 1 cut(s) 406
Bst6I CTCTTC 1 cut(s) 273
BstACI GRCGYC 1 cut(s) 406
BstC8I GCNNGC 2 cut(s) 149, 179
BstDEI CTNAG 2 cut(s) 161, 429
BstFNI CGCG 1 cut(s) 97
BstKTI GATC 2 cut(s) 123, 185
BstMAI GTCTC 1 cut(s) 184
BstMBI GATC 2 cut(s) 120, 182
BstMCI CGRYCG 1 cut(s) 185
BstMWI GCNNNNNNNGC 2 cut(s) 217, 223
BstSCI CCNGG 2 cut(s) 343, 358
BstUI CGCG 1 cut(s) 97
BstV1I GCAGC 2 cut(s) 24, 229
BsuRI GGCC 1 cut(s) 83
BtsI GCAGTG 1 cut(s) 70
BtsIMutI CAGTG 1 cut(s) 70
Cac8I GCNNGC 2 cut(s) 149, 179
Cfr10I RCCGGY 4 cut(s) 177, 205, 329, 368
Cfr13I GGNCC 5 cut(s) 82, 199, 250, 341, 366
CseI GACGC 1 cut(s) 395
Csp6I GTAC 1 cut(s) 379
CspAI ACCGGT 1 cut(s) 368
CviQI GTAC 1 cut(s) 379
DdeI CTNAG 2 cut(s) 161, 429
DpnI GATC 2 cut(s) 122, 184
DpnII GATC 2 cut(s) 120, 182
Eam1104I CTCTTC 1 cut(s) 273
EarI CTCTTC 1 cut(s) 273
Eco24I GRGCYC 1 cut(s) 104
Eco47I GGWCC 4 cut(s) 199, 250, 341, 366
Eco57I CTGAAG 1 cut(s) 266
EcoO109I RGGNCCY 1 cut(s) 250
EcoT38I GRGCYC 1 cut(s) 104
Esp3I CGTCTC 1 cut(s) 184
FaqI GGGAC 1 cut(s) 250
FauI CCCGC 3 cut(s) 68, 164, 276
Fnu4HI GCNGC 7 cut(s) 13, 16, 81, 218, 221, 224, 302
FriOI GRGCYC 1 cut(s) 104
Fsp4HI GCNGC 7 cut(s) 13, 16, 81, 218, 221, 224, 302
FspBI CTAG 2 cut(s) 62, 354
GluI GCNGC 7 cut(s) 13, 16, 81, 218, 221, 224, 302
GsaI CCCAGC 1 cut(s) 147
HaeIII GGCC 1 cut(s) 83
HgaI GACGC 1 cut(s) 395
Hin1I GRCGYC 1 cut(s) 406
HinfI GANTC 1 cut(s) 112
Hpy166II GTNNAC 1 cut(s) 366
Hpy188III TCNNGA 1 cut(s) 428
Hpy8I GTNNAC 1 cut(s) 366
Hpy99I CGWCG 1 cut(s) 190
HpyAV CCTTC 1 cut(s) 241
HpyCH4V TGCA 4 cut(s) 12, 46, 70, 217
HpyF10VI GCNNNNNNNGC 2 cut(s) 217, 223
HpyF3I CTNAG 2 cut(s) 161, 429
Hsp92I GRCGYC 1 cut(s) 406
KroI GCCGGC 1 cut(s) 177
KroNI GCCGGC 1 cut(s) 179
Kzo9I GATC 2 cut(s) 120, 182
LmnI GCTCC 5 cut(s) 63, 99, 132, 168, 174
Lsp1109I GCAGC 2 cut(s) 24, 229
LweI GCATC 1 cut(s) 144
MaeI CTAG 2 cut(s) 62, 354
MaeIII GTNAC 1 cut(s) 418
MalI GATC 2 cut(s) 122, 184
MbiI CCGCTC 1 cut(s) 171
MboI GATC 2 cut(s) 120, 182
MboII GAAGA 1 cut(s) 290
MhlI GDGCHC 1 cut(s) 104
MlyI GAGTC 1 cut(s) 121
MmeI TCCRAC 1 cut(s) 319
MnlI CCTC 6 cut(s) 36, 141, 225, 228, 387, 390
MroNI GCCGGC 1 cut(s) 177
MspA1I CMGCKG 1 cut(s) 15
MspR9I CCNGG 2 cut(s) 345, 360
MvnI CGCG 1 cut(s) 97
MwoI GCNNNNNNNGC 2 cut(s) 217, 223
NaeI GCCGGC 1 cut(s) 179
NciI CCSGG 2 cut(s) 345, 360
NdeII GATC 2 cut(s) 120, 182
NgoMIV GCCGGC 1 cut(s) 177
NlaIV GGNNCC 3 cut(s) 101, 176, 210
PdiI GCCGGC 1 cut(s) 179
PinAI ACCGGT 1 cut(s) 368
PkrI GCNGC 7 cut(s) 14, 17, 82, 219, 222, 225, 303
Ple19I CGATCG 1 cut(s) 185
PleI GAGTC 1 cut(s) 120
PpsI GAGTC 1 cut(s) 120
PpuMI RGGWCCY 1 cut(s) 250
Psp5II RGGWCCY 1 cut(s) 250
PspFI CCCAGC 1 cut(s) 143
PspN4I GGNNCC 3 cut(s) 101, 176, 210
PspPI GGNCC 5 cut(s) 82, 199, 250, 341, 366
PspPPI RGGWCCY 1 cut(s) 250
PvuI CGATCG 1 cut(s) 185
RsaI GTAC 1 cut(s) 380
RsaNI GTAC 1 cut(s) 379
SatI GCNGC 7 cut(s) 13, 16, 81, 218, 221, 224, 302
Sau3AI GATC 2 cut(s) 120, 182
Sau96I GGNCC 5 cut(s) 82, 199, 250, 341, 366
SchI GAGTC 1 cut(s) 121
ScrFI CCNGG 2 cut(s) 345, 360
SduI GDGCHC 1 cut(s) 104
SetI ASST 5 cut(s) 28, 60, 67, 129, 255
SfaNI GCATC 1 cut(s) 144
SinI GGWCC 4 cut(s) 199, 250, 341, 366
SsiI CCGC 9 cut(s) 15, 75, 80, 97, 171, 221, 224, 269, 301
SspMI CTAG 2 cut(s) 62, 354
StyD4I CCNGG 2 cut(s) 343, 358
TaqI TCGA 1 cut(s) 185
TauI GCSGC 5 cut(s) 18, 83, 223, 226, 304
TscAI CASTG 1 cut(s) 77
TseI GCWGC 2 cut(s) 12, 217
TspGWI ACGGA 1 cut(s) 105
TspRI CASTG 1 cut(s) 77
VpaK11BI GGWCC 4 cut(s) 199, 250, 341, 366
XspI CTAG 2 cut(s) 62, 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.