FvH4_6g36962

1-acyl-sn-glycerol-3-phosphate acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001488
Physical Location & Seq
Forward (+)
29035120 .. 29039256
4137 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g36962.t1

Sequence Viewer

Length: 1149 bp
ATGGCGATCGCACTTGGACTCCTCTTTTCTGTGGTGGTGGTCCTCCACCCGCTAATCGTTCATCTCATTCCGGCGGTGCTGCTCTGCTTCTCAGGCCTCTTAGCCAATCTGGTTCAGGCGATTTGTTTTATTTGTATCTGGCCGATTTCGGAGAATGCATACACAAGGTTAAACGACGTCGTTAAGGAATTGGATTGGCGGGTTCGTGTAAGTATCGTTAATTGGTGGGCTGGCTTTGTGATCCTAGAGTGTATAGAGCAGGAAGAAACAGAAACCAGTCGTTTAAAGGGGGAAGTGCATGAACTCGTACTATCCAATGCTAGAAATGATACCAATCGTCTTCTGGATCTGGTTCTCGCTCAGTGGTCAGGTTTCCTCGGCAGTTTAGTAGCTGTAGTAAAGACATCAGCAAGATACAGTCCGGTCATAGGATGGTCAATGTGGATTTCAGAATATGTTTCTTCAAGAAGTTGTGTCCATGATGCGAGTAAACTCAAGAGAACGGGTTTTGTTCAGGGTGATCTTCTAGCAGCCCAGAGGCTTCCTGTCCCTAGCAAGGTTTTGAGTTCTGATACTAAGGATTTAGTTTATGCAGTAAGACGTGCTTACTCTGCTGTTCCATCCATTTATATCATAACAGTTGCTATTCCTAGAACATCACCTCCACCCACACTTGAAAGTGTAATTAAAGGGGGACATTCTGTGGTGCATGTGTACATCAAGCGCCATATCACTAAAAAATGTCTTCAAACTGATGACGCTGTGGAAAATATGTGCACAGAAATACTGGCAGCCAAGGATGCATTATTGAACGAACGTATAGCAGAACACAGTTTTGGCGATAAAGGATTCCAAGCTATTGGTCGGCCACTAATGTGTTTCTTGGTTGTTATATCTTCAATTTTGTTGTGGGCTCTAAAGCTCAACTTTGTCTGCCGTTCTAGACTGCTTGTATCGAGTGTTGCCTTCTTTACTGGCCGGATGCTTGATGTGTTTGGCTTTGGAGTGCTTTCGATGTTGCAGTGTTTAATGGGAGCTGCTATAGCAAACATTACTTGGTTGGATCACCTTAAGCCCATCTGTGACGTGTTGATTCCTATTGTTTGCGAATCGATCTCGGTTTGCCCTTTTGGTACAATAGATTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko00564 ko01100 ko01110 ko04072 map00561 map00564 map01100 map01110 map04072
Pfam Domains
Protein Families
Acyltransf_C Acyltransferase

Protein Analysis

383

Amino Acids

42.31

Weight (kDa)

7.93

Isoelectric Point (pI)

37.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyltransf_C PF16076 228 - 298 4.1e-06 Acyltransferase C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 180
AciI CCGC 3 cut(s) 50, 74, 199
AclWI GGATC 3 cut(s) 235, 354, 1071
AcoI YGGCCR 3 cut(s) 140, 866, 976
AcyI GRCGYC 1 cut(s) 177
AfaI GTAC 3 cut(s) 309, 716, 1135
AfiI CCNNNNNNNGG 2 cut(s) 428, 556
AflII CTTAAG 1 cut(s) 1070
AflIII ACRYGT 1 cut(s) 1086
AgsI TTSAA 5 cut(s) 465, 677, 749, 811, 900
AjiI CACGTC 2 cut(s) 602, 1087
AjuI GAANNNNNNNTTGG 2 cut(s) 819, 851
AleI CACNNNNGTG 1 cut(s) 874
AloI GAACNNNNNNTCC 2 cut(s) 646, 678
AluBI AGCT 4 cut(s) 392, 857, 922, 1037
AluI AGCT 4 cut(s) 392, 857, 922, 1037
Alw21I GWGCWC 1 cut(s) 779
Alw44I GTGCAC 1 cut(s) 775
AlwI GGATC 3 cut(s) 235, 354, 1071
AoxI GGCC 4 cut(s) 94, 140, 866, 976
ApaLI GTGCAC 1 cut(s) 775
ApeKI GCWGC 4 cut(s) 79, 530, 791, 1037
AsiSI GCGATCGC 1 cut(s) 9
AspLEI GCGC 1 cut(s) 726
AspS9I GGNCC 1 cut(s) 40
AsuHPI GGTGA 3 cut(s) 530, 651, 1058
AvaII GGWCC 1 cut(s) 40
BaeGI GKGCMC 1 cut(s) 779
BanII GRGCYC 1 cut(s) 916
BbsI GAAGAC 2 cut(s) 332, 737
Bbv12I GWGCWC 1 cut(s) 779
BbvI GCAGC 4 cut(s) 66, 542, 803, 1024
BccI CCATC 3 cut(s) 426, 628, 1085
BceAI ACGGC 1 cut(s) 921
BfaI CTAG 6 cut(s) 245, 321, 527, 552, 651, 942
BfmI CTRYAG 2 cut(s) 393, 1041
BfoI RGCGCY 1 cut(s) 727
BfrI CTTAAG 1 cut(s) 1070
BisI GCNGC 4 cut(s) 80, 531, 792, 1038
BlsI GCNGC 4 cut(s) 81, 532, 793, 1039
Bme18I GGWCC 1 cut(s) 40
BmgBI CACGTC 2 cut(s) 602, 1087
BmgT120I GGNCC 1 cut(s) 40
BmsI GCATC 3 cut(s) 472, 790, 972
BpiI GAAGAC 2 cut(s) 332, 737
BpuEI CTTGAG 1 cut(s) 479
Bsa29I ATCGAT 1 cut(s) 1112
BsaBI GATNNNNATC 1 cut(s) 333
BsaHI GRCGYC 1 cut(s) 177
BsaJI CCNNGG 2 cut(s) 376, 795
BsaWI WCCGGW 1 cut(s) 421
BsaXI ACNNNNNCTCC 3 cut(s) 33, 646, 676
Bsc4I CCNNNNNNNGG 2 cut(s) 428, 556
Bse1I ACTGG 3 cut(s) 276, 792, 979
Bse8I GATNNNNATC 1 cut(s) 333
BseCI ATCGAT 1 cut(s) 1112
BseDI CCNNGG 2 cut(s) 376, 795
BseGI GGATG 4 cut(s) 437, 620, 805, 987
BseJI GATNNNNATC 1 cut(s) 333
BseLI CCNNNNNNNGG 2 cut(s) 428, 556
BseMII CTCAG 2 cut(s) 105, 374
BseNI ACTGG 3 cut(s) 276, 792, 979
BseRI GAGGAG 1 cut(s) 11
BseSI GKGCMC 1 cut(s) 779
BseXI GCAGC 4 cut(s) 66, 542, 803, 1024
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 4 cut(s) 96, 142, 868, 978
BshVI ATCGAT 1 cut(s) 1112
BsiEI CGRYCG 1 cut(s) 9
BsiHKAI GWGCWC 1 cut(s) 779
BsiSI CCGG 3 cut(s) 71, 422, 979
BslFI GGGAC 2 cut(s) 533, 708
BslI CCNNNNNNNGG 2 cut(s) 428, 556
BsmFI GGGAC 2 cut(s) 533, 708
BsmI GAATGC 1 cut(s) 160
BsnI GGCC 4 cut(s) 96, 142, 868, 978
Bsp1286I GDGCHC 2 cut(s) 779, 916
Bsp1407I TGTACA 1 cut(s) 714
Bsp143I GATC 6 cut(s) 6, 240, 346, 520, 1063, 1113
BspACI CCGC 3 cut(s) 50, 74, 199
BspANI GGCC 4 cut(s) 96, 142, 868, 978
BspCNI CTCAG 2 cut(s) 104, 373
BspDI ATCGAT 1 cut(s) 1112
BspPI GGATC 3 cut(s) 235, 354, 1071
BspTI CTTAAG 1 cut(s) 1070
BsrGI TGTACA 1 cut(s) 714
BsrI ACTGG 3 cut(s) 276, 792, 979
BssECI CCNNGG 2 cut(s) 376, 795
BssMI GATC 6 cut(s) 6, 240, 346, 520, 1063, 1113
BssNI GRCGYC 1 cut(s) 177
BssT1I CCWWGG 1 cut(s) 795
Bst4CI ACNGT 3 cut(s) 419, 640, 833
BstACI GRCGYC 1 cut(s) 177
BstAFI CTTAAG 1 cut(s) 1070
BstAUI TGTACA 1 cut(s) 714
BstC8I GCNNGC 1 cut(s) 232
BstDEI CTNAG 4 cut(s) 91, 100, 360, 576
BstF5I GGATG 4 cut(s) 437, 620, 805, 987
BstH2I RGCGCY 1 cut(s) 727
BstHHI GCGC 1 cut(s) 726
BstKTI GATC 6 cut(s) 9, 243, 349, 523, 1066, 1116
BstMBI GATC 6 cut(s) 6, 240, 346, 520, 1063, 1113
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 4 cut(s) 93, 611, 800, 1043
BstNSI RCATGY 1 cut(s) 713
BstSFI CTRYAG 2 cut(s) 393, 1041
BstSLI GKGCMC 1 cut(s) 779
BstV1I GCAGC 4 cut(s) 66, 542, 803, 1024
BstV2I GAAGAC 2 cut(s) 332, 737
BstX2I RGATCY 1 cut(s) 346
BstXI CCANNNNNNTGG 1 cut(s) 860
BstYI RGATCY 1 cut(s) 346
Bsu15I ATCGAT 1 cut(s) 1112
BsuRI GGCC 4 cut(s) 96, 142, 868, 978
BsuTUI ATCGAT 1 cut(s) 1112
BtrI CACGTC 2 cut(s) 602, 1087
BtsCI GGATG 4 cut(s) 437, 620, 805, 987
BtsI GCAGTG 1 cut(s) 1028
BtsIMutI CAGTG 2 cut(s) 368, 1028
Cac8I GCNNGC 1 cut(s) 232
CfoI GCGC 1 cut(s) 726
Cfr13I GGNCC 1 cut(s) 40
ClaI ATCGAT 1 cut(s) 1112
CseI GACGC 1 cut(s) 767
Csp6I GTAC 3 cut(s) 308, 715, 1134
CviAII CATG 3 cut(s) 299, 479, 710
CviQI GTAC 3 cut(s) 308, 715, 1134
DdeI CTNAG 4 cut(s) 91, 100, 360, 576
DpnI GATC 6 cut(s) 8, 242, 348, 522, 1065, 1115
DpnII GATC 6 cut(s) 6, 240, 346, 520, 1063, 1113
DraI TTTAAA 1 cut(s) 285
EaeI YGGCCR 3 cut(s) 140, 866, 976
Eco130I CCWWGG 1 cut(s) 795
Eco147I AGGCCT 1 cut(s) 96
Eco24I GRGCYC 1 cut(s) 916
Eco47I GGWCC 1 cut(s) 40
EcoT14I CCWWGG 1 cut(s) 795
EcoT22I ATGCAT 2 cut(s) 160, 805
EcoT38I GRGCYC 1 cut(s) 916
ErhI CCWWGG 1 cut(s) 795
FaeI CATG 3 cut(s) 302, 482, 713
FalI AAGNNNNNCTT 4 cut(s) 589, 621, 911, 943
FaqI GGGAC 2 cut(s) 533, 708
FatI CATG 3 cut(s) 298, 478, 709
FauI CCCGC 2 cut(s) 57, 192
Fnu4HI GCNGC 4 cut(s) 80, 531, 792, 1038
FokI GGATG 4 cut(s) 444, 607, 812, 994
FriOI GRGCYC 1 cut(s) 916
Fsp4HI GCNGC 4 cut(s) 80, 531, 792, 1038
FspBI CTAG 6 cut(s) 245, 321, 527, 552, 651, 942
GlaI GCGC 1 cut(s) 725
GluI GCNGC 4 cut(s) 80, 531, 792, 1038
HaeII RGCGCY 1 cut(s) 727
HaeIII GGCC 4 cut(s) 96, 142, 868, 978
HapII CCGG 3 cut(s) 71, 422, 979
HgaI GACGC 1 cut(s) 767
HhaI GCGC 1 cut(s) 726
Hin1I GRCGYC 1 cut(s) 177
Hin1II CATG 3 cut(s) 302, 482, 713
Hin6I GCGC 1 cut(s) 724
HinP1I GCGC 1 cut(s) 724
HinfI GANTC 4 cut(s) 18, 849, 1093, 1109
HpaII CCGG 3 cut(s) 71, 422, 979
HphI GGTGA 3 cut(s) 530, 651, 1058
Hpy166II GTNNAC 3 cut(s) 491, 715, 777
Hpy188I TCNGA 3 cut(s) 151, 451, 571
Hpy188III TCNNGA 4 cut(s) 344, 465, 496, 942
Hpy8I GTNNAC 3 cut(s) 491, 715, 777
Hpy99I CGWCG 2 cut(s) 179, 182
HpyAV CCTTC 1 cut(s) 976
HpyCH4III ACNGT 3 cut(s) 419, 640, 833
HpyCH4IV ACGT 4 cut(s) 177, 601, 817, 1086
HpyCH4V TGCA 7 cut(s) 158, 298, 593, 709, 777, 803, 1021
HpyF10VI GCNNNNNNNGC 4 cut(s) 93, 611, 800, 1043
HpyF3I CTNAG 4 cut(s) 91, 100, 360, 576
HpySE526I ACGT 4 cut(s) 177, 601, 817, 1086
Hsp92I GRCGYC 1 cut(s) 177
Hsp92II CATG 3 cut(s) 302, 482, 713
HspAI GCGC 1 cut(s) 724
Kzo9I GATC 6 cut(s) 6, 240, 346, 520, 1063, 1113
LmnI GCTCC 1 cut(s) 1034
Lsp1109I GCAGC 4 cut(s) 66, 542, 803, 1024
LweI GCATC 3 cut(s) 472, 790, 972
MaeI CTAG 6 cut(s) 245, 321, 527, 552, 651, 942
MaeII ACGT 4 cut(s) 177, 601, 817, 1086
MaeIII GTNAC 1 cut(s) 1082
MalI GATC 6 cut(s) 8, 242, 348, 522, 1065, 1115
MboI GATC 6 cut(s) 6, 240, 346, 520, 1063, 1113
MboII GAAGA 6 cut(s) 275, 332, 453, 515, 737, 888
MflI RGATCY 1 cut(s) 346
MhlI GDGCHC 2 cut(s) 779, 916
MluCI AATT 4 cut(s) 188, 220, 684, 900
MlyI GAGTC 1 cut(s) 12
MmeI TCCRAC 1 cut(s) 1041
MnlI CCTC 6 cut(s) 32, 53, 107, 386, 531, 672
Mph1103I ATGCAT 2 cut(s) 160, 805
MseI TTAA 7 cut(s) 170, 183, 219, 284, 687, 1028, 1071
MslI CAYNNNNRTG 1 cut(s) 874
MspCI CTTAAG 1 cut(s) 1070
MspI CCGG 3 cut(s) 71, 422, 979
Mva1269I GAATGC 1 cut(s) 160
MwoI GCNNNNNNNGC 4 cut(s) 93, 611, 800, 1043
NdeII GATC 6 cut(s) 6, 240, 346, 520, 1063, 1113
NlaIII CATG 3 cut(s) 302, 482, 713
NmeAIII GCCGAG 1 cut(s) 357
NmuCI GTSAC 1 cut(s) 1082
NsiI ATGCAT 2 cut(s) 160, 805
NspI RCATGY 1 cut(s) 713
OliI CACNNNNGTG 1 cut(s) 874
PceI AGGCCT 1 cut(s) 96
PctI GAATGC 1 cut(s) 160
PfeI GAWTC 3 cut(s) 849, 1093, 1109
PkrI GCNGC 4 cut(s) 81, 532, 793, 1039
Ple19I CGATCG 1 cut(s) 9
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PspPI GGNCC 1 cut(s) 40
PsuI RGATCY 1 cut(s) 346
PvuI CGATCG 1 cut(s) 9
RgaI GCGATCGC 1 cut(s) 9
RsaI GTAC 3 cut(s) 309, 716, 1135
RsaNI GTAC 3 cut(s) 308, 715, 1134
RseI CAYNNNNRTG 1 cut(s) 874
SaqAI TTAA 7 cut(s) 170, 183, 219, 284, 687, 1028, 1071
SatI GCNGC 4 cut(s) 80, 531, 792, 1038
Sau3AI GATC 6 cut(s) 6, 240, 346, 520, 1063, 1113
Sau96I GGNCC 1 cut(s) 40
SchI GAGTC 1 cut(s) 12
SduI GDGCHC 2 cut(s) 779, 916
SfaAI GCGATCGC 1 cut(s) 9
SfaNI GCATC 3 cut(s) 472, 790, 972
SfcI CTRYAG 2 cut(s) 393, 1041
SgfI GCGATCGC 1 cut(s) 9
SinI GGWCC 1 cut(s) 40
SmiMI CAYNNNNRTG 1 cut(s) 874
SmlI CTYRAG 2 cut(s) 494, 1070
SmoI CTYRAG 2 cut(s) 494, 1070
Sse9I AATT 4 cut(s) 188, 220, 684, 900
SseBI AGGCCT 1 cut(s) 96
SsiI CCGC 3 cut(s) 50, 74, 199
SspMI CTAG 6 cut(s) 245, 321, 527, 552, 651, 942
StuI AGGCCT 1 cut(s) 96
StyI CCWWGG 1 cut(s) 795
TaaI ACNGT 3 cut(s) 419, 640, 833
TaiI ACGT 4 cut(s) 180, 604, 820, 1089
TaqI TCGA 3 cut(s) 956, 1013, 1112
TasI AATT 4 cut(s) 188, 220, 684, 900
TatI WGTACW 1 cut(s) 714
TfiI GAWTC 3 cut(s) 849, 1093, 1109
Tru1I TTAA 7 cut(s) 170, 183, 219, 284, 687, 1028, 1071
Tru9I TTAA 7 cut(s) 170, 183, 219, 284, 687, 1028, 1071
TscAI CASTG 2 cut(s) 368, 1028
TseFI GTSAC 1 cut(s) 1082
TseI GCWGC 4 cut(s) 79, 530, 791, 1037
Tsp45I GTSAC 1 cut(s) 1082
TspDTI ATGAA 2 cut(s) 50, 315
TspRI CASTG 2 cut(s) 368, 1028
Vha464I CTTAAG 1 cut(s) 1070
VneI GTGCAC 1 cut(s) 775
VpaK11BI GGWCC 1 cut(s) 40
XbaI TCTAGA 1 cut(s) 941
XceI RCATGY 1 cut(s) 713
XcmI CCANNNNNNNNNTGG 1 cut(s) 340
XspI CTAG 6 cut(s) 245, 321, 527, 552, 651, 942
ZraI GACGTC 1 cut(s) 178
Zsp2I ATGCAT 2 cut(s) 160, 805
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.