Rw2G038420

1-acyl-sn-glycerol-3-phosphate acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0001488
Physical Location & Seq
Forward (+)
63372438 .. 63374400
1963 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G038420.1

Sequence Viewer

Length: 543 bp
ATGGTAACATTTGCAGTCAGATCTAAAGGACTTCCCTCAGCCCTTTTGGATTTGGTCTATGCAGTAAGACGTGCGTACTCTGCTGTTCCAGCCATTTATGTTATAACAGTGGCTATTCCTAAAACTTCACCTCCACCTACACTTGAAAGTGTAATTAAAGGGGGACCTTCTGTGGTGCATGCGTACGTCAAGCAGCATGCGACTAAAAAATGGCCTGAAACTGAAGATGCTGTTGAAAAGTGGTGCACAGAAATACTTGCAGCCAAGGGTGCATTATTGGATGAACATATAGCAGAACAAACTTTTGGCAATAAAGGATTGCAAGCTATTGGTCGGCCACTAAAGTGTTTATTGGTTGTTATATCTCTAATTGTTTTGGGGGCTCTAAAGTTCCACTTTGTCTGCTGTTCCACACTGCTTGTATTGAGTGCTGCCCTCTTTACTGGCCGGATGCTTACTCTGTTCGGCTGTGGAGTGCTTTCGCTGTTGCAATGTTTCATGGAAGCTGCTATAGCAAACATTAGTTGGTCAGAGCACCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko00564 ko01100 ko01110 ko04072 map00561 map00564 map01100 map01110 map04072
Pfam Domains
Protein Families
Acyltransf_C Acyltransferase

Protein Analysis

180

Amino Acids

19.41

Weight (kDa)

8.76

Isoelectric Point (pI)

44.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyltransf_C PF16076 51 - 121 8e-14 Acyltransferase C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 104
AcoI YGGCCR 2 cut(s) 335, 445
AcuI CTGAAG 1 cut(s) 243
AfaI GTAC 2 cut(s) 77, 185
AgsI TTSAA 2 cut(s) 146, 236
AjiI CACGTC 1 cut(s) 71
AjuI GAANNNNNNNTTGG 2 cut(s) 288, 320
AleI CACNNNNGTG 1 cut(s) 343
AluBI AGCT 2 cut(s) 326, 506
AluI AGCT 2 cut(s) 326, 506
Alw21I GWGCWC 2 cut(s) 248, 537
Alw44I GTGCAC 1 cut(s) 244
AoxI GGCC 3 cut(s) 212, 335, 445
ApaLI GTGCAC 1 cut(s) 244
ApeKI GCWGC 4 cut(s) 193, 260, 431, 506
AspS9I GGNCC 1 cut(s) 164
AsuHPI GGTGA 1 cut(s) 120
AvaII GGWCC 1 cut(s) 164
BaeGI GKGCMC 1 cut(s) 248
BanII GRGCYC 1 cut(s) 385
Bbv12I GWGCWC 2 cut(s) 248, 537
BbvCI CCTCAGC 1 cut(s) 37
BbvI GCAGC 4 cut(s) 205, 272, 418, 493
BfaI CTAG 1 cut(s) 541
BfmI CTRYAG 1 cut(s) 510
BglII AGATCT 1 cut(s) 20
BisI GCNGC 4 cut(s) 194, 261, 432, 507
BlsI GCNGC 4 cut(s) 195, 262, 433, 508
Bme18I GGWCC 1 cut(s) 164
BmgBI CACGTC 1 cut(s) 71
BmgT120I GGNCC 1 cut(s) 164
BmiI GGNNCC 1 cut(s) 165
BmsI GCATC 2 cut(s) 217, 441
Bpu10I CCTNAGC 1 cut(s) 37
BsaJI CCNNGG 1 cut(s) 264
BsaXI ACNNNNNCTCC 2 cut(s) 115, 145
Bse1I ACTGG 1 cut(s) 448
Bse3DI GCAATG 1 cut(s) 497
BseDI CCNNGG 1 cut(s) 264
BseGI GGATG 2 cut(s) 286, 456
BseMI GCAATG 1 cut(s) 497
BseMII CTCAG 1 cut(s) 51
BseNI ACTGG 1 cut(s) 448
BseSI GKGCMC 1 cut(s) 248
BseXI GCAGC 4 cut(s) 205, 272, 418, 493
BshFI GGCC 3 cut(s) 214, 337, 447
BsiHKAI GWGCWC 2 cut(s) 248, 537
BsiSI CCGG 1 cut(s) 448
BsiWI CGTACG 1 cut(s) 183
BslFI GGGAC 1 cut(s) 177
BsmFI GGGAC 1 cut(s) 177
BsnI GGCC 3 cut(s) 214, 337, 447
Bsp1286I GDGCHC 3 cut(s) 248, 385, 537
Bsp143I GATC 1 cut(s) 20
BspANI GGCC 3 cut(s) 214, 337, 447
BspCNI CTCAG 1 cut(s) 50
BspLI GGNNCC 1 cut(s) 165
BsrDI GCAATG 1 cut(s) 497
BsrI ACTGG 1 cut(s) 448
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 1 cut(s) 20
BssT1I CCWWGG 1 cut(s) 264
Bst4CI ACNGT 1 cut(s) 109
BstC8I GCNNGC 3 cut(s) 180, 198, 324
BstDEI CTNAG 1 cut(s) 37
BstF5I GGATG 2 cut(s) 286, 456
BstKTI GATC 1 cut(s) 23
BstMBI GATC 1 cut(s) 20
BstMWI GCNNNNNNNGC 4 cut(s) 80, 89, 269, 512
BstNSI RCATGY 2 cut(s) 182, 200
BstSFI CTRYAG 1 cut(s) 510
BstSLI GKGCMC 1 cut(s) 248
BstV1I GCAGC 4 cut(s) 205, 272, 418, 493
BstX2I RGATCY 1 cut(s) 20
BstYI RGATCY 1 cut(s) 20
BsuRI GGCC 3 cut(s) 214, 337, 447
BtrI CACGTC 1 cut(s) 71
BtsCI GGATG 2 cut(s) 286, 456
BtsI GCAGTG 1 cut(s) 413
BtsIMutI CAGTG 2 cut(s) 114, 413
Cac8I GCNNGC 3 cut(s) 180, 198, 324
Cfr13I GGNCC 1 cut(s) 164
Csp6I GTAC 2 cut(s) 76, 184
CspCI CAANNNNNGTGG 2 cut(s) 400, 435
CviAII CATG 3 cut(s) 179, 197, 499
CviQI GTAC 2 cut(s) 76, 184
DdeI CTNAG 1 cut(s) 37
DpnI GATC 1 cut(s) 22
DpnII GATC 1 cut(s) 20
EaeI YGGCCR 2 cut(s) 335, 445
Eco130I CCWWGG 1 cut(s) 264
Eco24I GRGCYC 1 cut(s) 385
Eco47I GGWCC 1 cut(s) 164
Eco57I CTGAAG 1 cut(s) 243
EcoO109I RGGNCCY 1 cut(s) 164
EcoT14I CCWWGG 1 cut(s) 264
EcoT38I GRGCYC 1 cut(s) 385
ErhI CCWWGG 1 cut(s) 264
FaeI CATG 3 cut(s) 182, 200, 502
FalI AAGNNNNNCTT 2 cut(s) 380, 412
FaqI GGGAC 1 cut(s) 177
FatI CATG 3 cut(s) 178, 196, 498
Fnu4HI GCNGC 4 cut(s) 194, 261, 432, 507
FokI GGATG 2 cut(s) 293, 463
FriOI GRGCYC 1 cut(s) 385
Fsp4HI GCNGC 4 cut(s) 194, 261, 432, 507
FspBI CTAG 1 cut(s) 541
GluI GCNGC 4 cut(s) 194, 261, 432, 507
HaeIII GGCC 3 cut(s) 214, 337, 447
HapII CCGG 1 cut(s) 448
Hin1II CATG 3 cut(s) 182, 200, 502
HpaII CCGG 1 cut(s) 448
HphI GGTGA 1 cut(s) 120
Hpy166II GTNNAC 1 cut(s) 246
Hpy188I TCNGA 2 cut(s) 20, 532
Hpy8I GTNNAC 1 cut(s) 246
HpyAV CCTTC 1 cut(s) 177
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4IV ACGT 2 cut(s) 70, 186
HpyCH4V TGCA 8 cut(s) 14, 62, 178, 246, 260, 272, 322, 490
HpyF10VI GCNNNNNNNGC 4 cut(s) 80, 89, 269, 512
HpyF3I CTNAG 1 cut(s) 37
HpySE526I ACGT 2 cut(s) 70, 186
Hsp92II CATG 3 cut(s) 182, 200, 502
Kzo9I GATC 1 cut(s) 20
LpnPI CCDG 4 cut(s) 102, 228, 429, 461
Lsp1109I GCAGC 4 cut(s) 205, 272, 418, 493
LweI GCATC 2 cut(s) 217, 441
MaeI CTAG 1 cut(s) 541
MaeII ACGT 2 cut(s) 70, 186
MaeIII GTNAC 1 cut(s) 4
MalI GATC 1 cut(s) 22
MboI GATC 1 cut(s) 20
MboII GAAGA 1 cut(s) 236
MflI RGATCY 1 cut(s) 20
MhlI GDGCHC 3 cut(s) 248, 385, 537
MluCI AATT 2 cut(s) 153, 369
MnlI CCTC 3 cut(s) 46, 141, 446
MseI TTAA 1 cut(s) 156
MslI CAYNNNNRTG 1 cut(s) 343
MspI CCGG 1 cut(s) 448
MwoI GCNNNNNNNGC 4 cut(s) 80, 89, 269, 512
NdeII GATC 1 cut(s) 20
NlaIII CATG 3 cut(s) 182, 200, 502
NlaIV GGNNCC 1 cut(s) 165
NspI RCATGY 2 cut(s) 182, 200
OliI CACNNNNGTG 1 cut(s) 343
PaeI GCATGC 2 cut(s) 182, 200
Pfl23II CGTACG 1 cut(s) 183
PkrI GCNGC 4 cut(s) 195, 262, 433, 508
PpuMI RGGWCCY 1 cut(s) 164
PsiI TTATAA 1 cut(s) 104
Psp5II RGGWCCY 1 cut(s) 164
PspLI CGTACG 1 cut(s) 183
PspN4I GGNNCC 1 cut(s) 165
PspPI GGNCC 1 cut(s) 164
PspPPI RGGWCCY 1 cut(s) 164
PsuI RGATCY 1 cut(s) 20
RsaI GTAC 2 cut(s) 77, 185
RsaNI GTAC 2 cut(s) 76, 184
RseI CAYNNNNRTG 1 cut(s) 343
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 4 cut(s) 194, 261, 432, 507
Sau3AI GATC 1 cut(s) 20
Sau96I GGNCC 1 cut(s) 164
SduI GDGCHC 3 cut(s) 248, 385, 537
SetI ASST 8 cut(s) 73, 133, 139, 169, 189, 328, 508, 540
SfaNI GCATC 2 cut(s) 217, 441
SfcI CTRYAG 1 cut(s) 510
SinI GGWCC 1 cut(s) 164
SmiMI CAYNNNNRTG 1 cut(s) 343
SphI GCATGC 2 cut(s) 182, 200
Sse9I AATT 2 cut(s) 153, 369
SspMI CTAG 1 cut(s) 541
StyI CCWWGG 1 cut(s) 264
TaaI ACNGT 1 cut(s) 109
TaiI ACGT 2 cut(s) 73, 189
TasI AATT 2 cut(s) 153, 369
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 2 cut(s) 114, 420
TseI GCWGC 4 cut(s) 193, 260, 431, 506
TspDTI ATGAA 2 cut(s) 297, 487
TspRI CASTG 2 cut(s) 114, 420
VneI GTGCAC 1 cut(s) 244
VpaK11BI GGWCC 1 cut(s) 164
XceI RCATGY 2 cut(s) 182, 200
XspI CTAG 1 cut(s) 541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.