Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001150

Physical Location & Seq

Genomic Coordinates Reverse (-)

5629223 .. 5630697

Gene Structure 1475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g10320.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGCGGATAGAGGTCTCCCAGACGAATTGATAGAGATGATTAGAGAGTACCTTGACCCTAAAACCCGAATGCATGTTGCTCAGTTCCGTGCCGTCTCTAAATCATGGAGATCTTTTATTCCTTCATTCAATCCACTCAAGCCACCACCTCAAGATCATCCTCTATTGCCCTCCAGATTTGGAATACATCTACCTACAGAGTCTCTTTACACCATCCAGCGTAGCATAGTCTATCATATTGCACCTTATCCTCCTCCTCATCACAATGATGAAAGGAAACAAGGCTGGTTAATGCGATTGGATACAAACCAAAAGTTACTTCCTCTATTATCATGGCGTGATGGAGGTTTGGAAAACCCAAGGGTGATGATTAACTCACTAGACTTTGGCGTACGTGAAGTGGCAAGACCCTATCTCTTAGCAAGTAACCAAGATAAGAACTATCTCAAGCTAGCTGTTTCCTTATACGTCGAGTTCTTCCCTGCAGTCATGTTGGTTAGGGATGGAGTTTTATACCTCGGAAAGTGGTCTTATCGTGGTGTTAAAGTTAAACAACGTTGCGTCCAACTCACTCGGGTAAATCCTGATGAGGATGATGGTAATGATCCATCATGTGGAAAAATGAGTAATTCTGATAAATATGATGATGTTATTTTCTATAAAGGGAAGTTCTGTGTAGTGTCTCAGTCTGGGAAAGCTGCAGCGATGGATTCTTCCTTTAAGTGGGAAGTGATTGCGTTTCCAGTACCTATTTCAATGTGGGATAAGAAGAAGAAGAAGTACTTGGTTGAATCGCTCCGGGAGCTTCTTTTAGTCGAAAGGCATGGGTCTACTTTTGTTGCGAAAGGTCATTCAGAGGAGGACATGCTCACGAAGGAAGTCAAGTTCAAGGTTTACAAGTTGGATGGAAATTGGAAGCAATGGATTGAGATGGAGGGTTCAGATTTGGATGATCGAATGTTGGTTGTGGGGGAAGATTGCTGCTTCTCAGTCTCCAGTAGAGACTTCCCAGGATGCCAAGGAAATTGTGTTTTATTTTCTTATGAAGTTTGGCGTGGTAAGACTATCTTTAGTAAAATTGGTGTGTTTCACTTGGATGTTGGGACCGCTTCGCCACTGGAAGCCGGCACTAACATCTTCCGTTCACCCCCATTGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

387

Amino Acids

44.28

Weight (kDa)

8.51

Isoelectric Point (pI)

37.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	183 - 363	1.2e-26	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001150)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10320 FvH4_1g10321 FvH4_1g10850
malus_domestica	MD14G1159500.v1.1 MD15G1237600.v1.1
prunus_persica	Prupe.7G176500_v2.0.a1 Prupe.7G176700_v2.0.a1 Prupe.7G176800_v2.0.a1 Prupe.7G176900_v2.0.a1
pyrus_communis	pycom02g09650 pycom02g09800 pycom14g13320 pycom15g21130
rosa_chinensis	RchiOBHm_Chr2g0097161 RchiOBHm_Chr2g0097171 RchiOBHm_Chr2g0098141 RchiOBHm_Chr2g0099621
rosa_laevigata	RLG00000014898 RLG00000016709 RLG00000016710 RLG00000016759 RLG00000016765 RLG00000016898
rosa_multiflora	Rmu_co8490487.1_g000001 Rmu_sc0001182.1_g000008 Rmu_sc0001182.1_g000009 Rmu_sc0002880.1_g000006 Rmu_sc0005120.1_g000014
rosa_roxburghii	Rroxscaffold_2G00142910 Rroxscaffold_2G00144250 Rroxscaffold_2G00144300 Rroxscaffold_2G00144910 Rroxscaffold_2G00144920
rosa_rugosa	Rorug02G0064900.1 Rorug02G0065400 Rorug02G0070300 Rorug02G0070300 Rorug02G0070400 Rorug02G0081700
rosa_samantha	Rh1CG355800 Rh2AG111900 Rh2AG117600 Rh2AG117900 Rh2BG114000 Rh2BG114100 Rh2BG120500 Rh2BG134300 Rh2CG116200 Rh2CG135200 Rh2DG115200 Rh2DG115300 Rh2DG115400 Rh2DG122200 Rh2DG135700
rosa_wichuraiana	Rw2G008710 Rw2G009180 Rw2G009210 Rw2G010130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	614
AccI	GTMKAC	1 cut(s)	830
AciI	CCGC	2 cut(s)	5, 1107
AclI	AACGTT	1 cut(s)	556
AclWI	GGATC	1 cut(s)	599
AfaI	GTAC	4 cut(s)	50, 393, 747, 782
AfiI	CCNNNNNNNGG	2 cut(s)	614, 723
AgsI	TTSAA	4 cut(s)	130, 756, 791, 889
AjnI	CCWGG	1 cut(s)	1009
AjuI	GAANNNNNNNTTGG	4 cut(s)	303, 335, 767, 799
AloI	GAACNNNNNNTCC	2 cut(s)	869, 901
AluBI	AGCT	4 cut(s)	451, 455, 698, 805
AluI	AGCT	4 cut(s)	451, 455, 698, 805
Alw26I	GTCTC	6 cut(s)	20, 100, 207, 687, 996, 997
AlwI	GGATC	1 cut(s)	599
Ama87I	CYCGRG	1 cut(s)	573
ApeKI	GCWGC	3 cut(s)	698, 701, 981
AspS9I	GGNCC	1 cut(s)	1104
AsuC2I	CCSGG	1 cut(s)	800
AsuHPI	GGTGA	2 cut(s)	376, 1137
AsuNHI	GCTAGC	1 cut(s)	451
AvaI	CYCGRG	1 cut(s)	573
AvaII	GGWCC	1 cut(s)	1104
BarI	GAAGNNNNNNTAC	2 cut(s)	764, 796
BbvI	GCAGC	3 cut(s)	685, 713, 968
BccI	CCATC	8 cut(s)	221, 335, 497, 590, 616, 700, 899, 925
BceAI	ACGGC	1 cut(s)	77
BciT130I	CCWGG	1 cut(s)	1011
BciVI	GTATCC	1 cut(s)	295
BcnI	CCSGG	1 cut(s)	800
BcoDI	GTCTC	6 cut(s)	20, 100, 207, 687, 996, 997
BfaI	CTAG	3 cut(s)	380, 452, 1159
BfmI	CTRYAG	3 cut(s)	195, 483, 699
BfuI	GTATCC	1 cut(s)	295
BglII	AGATCT	1 cut(s)	110
BisI	GCNGC	3 cut(s)	699, 702, 982
BlsI	GCNGC	3 cut(s)	700, 703, 983
BmcAI	AGTACT	1 cut(s)	782
Bme1390I	CCNGG	2 cut(s)	800, 1011
Bme18I	GGWCC	1 cut(s)	1104
BmeT110I	CYCGRG	1 cut(s)	573
BmgT120I	GGNCC	1 cut(s)	1104
BmiI	GGNNCC	1 cut(s)	1105
BmrFI	CCNGG	2 cut(s)	800, 1011
BmsI	GCATC	1 cut(s)	1004
BmtI	GCTAGC	1 cut(s)	455
BpmI	CTGGAG	2 cut(s)	157, 979
BpuEI	CTTGAG	3 cut(s)	122, 135, 431
BpuMI	CCSGG	1 cut(s)	800
BsaAI	YACGTR	1 cut(s)	395
BsaI	GGTCTC	1 cut(s)	20
BsaJI	CCNNGG	4 cut(s)	359, 517, 1009, 1018
Bsc4I	CCNNNNNNNGG	2 cut(s)	614, 723
Bse118I	RCCGGY	1 cut(s)	1124
Bse1I	ACTGG	3 cut(s)	743, 996, 1122
Bse3DI	GCAATG	1 cut(s)	926
BseBI	CCWGG	1 cut(s)	1011
BseDI	CCNNGG	4 cut(s)	359, 517, 1009, 1018
BseGI	GGATG	8 cut(s)	157, 213, 508, 598, 910, 955, 1019, 1102
BseLI	CCNNNNNNNGG	2 cut(s)	614, 723
BseMI	GCAATG	1 cut(s)	926
BseMII	CTCAG	3 cut(s)	95, 698, 1002
BseNI	ACTGG	3 cut(s)	743, 996, 1122
BseRI	GAGGAG	3 cut(s)	243, 246, 872
BseXI	GCAGC	3 cut(s)	685, 713, 968
BsiHKCI	CYCGRG	1 cut(s)	573
BsiSI	CCGG	2 cut(s)	799, 1125
BsiWI	CGTACG	1 cut(s)	391
BslFI	GGGAC	1 cut(s)	1117
BslI	CCNNNNNNNGG	2 cut(s)	614, 723
BsmAI	GTCTC	6 cut(s)	20, 100, 207, 687, 996, 997
BsmBI	CGTCTC	1 cut(s)	100
BsmFI	GGGAC	1 cut(s)	1117
BsmI	GAATGC	1 cut(s)	75
Bso31I	GGTCTC	1 cut(s)	20
BsoBI	CYCGRG	1 cut(s)	573
Bsp143I	GATC	5 cut(s)	110, 154, 604, 952, 1155
BspACI	CCGC	2 cut(s)	5, 1107
BspCNI	CTCAG	3 cut(s)	94, 697, 1001
BspLI	GGNNCC	1 cut(s)	1105
BspMAI	CTGCAG	2 cut(s)	487, 703
BspOI	GCTAGC	1 cut(s)	455
BspPI	GGATC	1 cut(s)	599
BspTNI	GGTCTC	1 cut(s)	20
BsrDI	GCAATG	1 cut(s)	926
BsrFI	RCCGGY	1 cut(s)	1124
BsrI	ACTGG	3 cut(s)	743, 996, 1122
BssAI	RCCGGY	1 cut(s)	1124
BssECI	CCNNGG	4 cut(s)	359, 517, 1009, 1018
BssMI	GATC	5 cut(s)	110, 154, 604, 952, 1155
BssT1I	CCWWGG	2 cut(s)	359, 1018
Bst2UI	CCWGG	1 cut(s)	1011
BstBAI	YACGTR	1 cut(s)	395
BstC8I	GCNNGC	2 cut(s)	453, 1126
BstDEI	CTNAG	4 cut(s)	81, 418, 684, 988
BstF5I	GGATG	8 cut(s)	157, 213, 508, 598, 910, 955, 1019, 1102
BstKTI	GATC	5 cut(s)	113, 157, 607, 955, 1158
BstMAI	GTCTC	6 cut(s)	20, 100, 207, 687, 996, 997
BstMBI	GATC	5 cut(s)	110, 154, 604, 952, 1155
BstMWI	GCNNNNNNNGC	1 cut(s)	802
BstNI	CCWGG	1 cut(s)	1011
BstNSI	RCATGY	2 cut(s)	77, 868
BstSCI	CCNGG	2 cut(s)	798, 1009
BstSFI	CTRYAG	3 cut(s)	195, 483, 699
BstV1I	GCAGC	3 cut(s)	685, 713, 968
BstX2I	RGATCY	1 cut(s)	110
BstYI	RGATCY	1 cut(s)	110
BsuI	GTATCC	1 cut(s)	295
BtgZI	GCGATG	1 cut(s)	719
BtsCI	GGATG	8 cut(s)	157, 213, 508, 598, 910, 955, 1019, 1102
BtsIMutI	CAGTG	1 cut(s)	1115
Cac8I	GCNNGC	2 cut(s)	453, 1126
Cfr10I	RCCGGY	1 cut(s)	1124
Cfr13I	GGNCC	1 cut(s)	1104
CseI	GACGC	1 cut(s)	550
Csp6I	GTAC	4 cut(s)	49, 392, 746, 781
CviAII	CATG	7 cut(s)	74, 105, 333, 490, 612, 824, 865
CviJI	RGCY	7 cut(s)	142, 285, 451, 455, 698, 805, 1124
CviKI_1	RGCY	7 cut(s)	142, 285, 451, 455, 698, 805, 1124
CviQI	GTAC	4 cut(s)	49, 392, 746, 781
DdeI	CTNAG	4 cut(s)	81, 418, 684, 988
DpnI	GATC	5 cut(s)	112, 156, 606, 954, 1157
DpnII	GATC	5 cut(s)	110, 154, 604, 952, 1155
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	359, 1018
Eco31I	GGTCTC	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	1104
Eco88I	CYCGRG	1 cut(s)	573
EcoRII	CCWGG	1 cut(s)	1009
EcoT14I	CCWWGG	2 cut(s)	359, 1018
EcoT22I	ATGCAT	1 cut(s)	75
ErhI	CCWWGG	2 cut(s)	359, 1018
Esp3I	CGTCTC	1 cut(s)	100
FaeI	CATG	7 cut(s)	77, 108, 336, 493, 615, 827, 868
FalI	AAGNNNNNCTT	4 cut(s)	767, 799, 1052, 1084
FaqI	GGGAC	1 cut(s)	1117
FatI	CATG	7 cut(s)	73, 104, 332, 489, 611, 823, 864
FblI	GTMKAC	1 cut(s)	830
Fnu4HI	GCNGC	3 cut(s)	699, 702, 982
FokI	GGATG	8 cut(s)	144, 200, 515, 605, 917, 962, 1026, 1109
Fsp4HI	GCNGC	3 cut(s)	699, 702, 982
FspBI	CTAG	3 cut(s)	380, 452, 1159
GluI	GCNGC	3 cut(s)	699, 702, 982
GsuI	CTGGAG	2 cut(s)	157, 979
HapII	CCGG	2 cut(s)	799, 1125
HgaI	GACGC	1 cut(s)	550
Hin1II	CATG	7 cut(s)	77, 108, 336, 493, 615, 827, 868
HinfI	GANTC	3 cut(s)	200, 710, 791
HpaII	CCGG	2 cut(s)	799, 1125
HphI	GGTGA	2 cut(s)	376, 1137
Hpy166II	GTNNAC	3 cut(s)	831, 895, 1145
Hpy188I	TCNGA	4 cut(s)	521, 634, 856, 943
Hpy188III	TCNNGA	4 cut(s)	152, 174, 584, 871
Hpy8I	GTNNAC	3 cut(s)	831, 895, 1145
Hpy99I	CGWCG	1 cut(s)	473
HpyAV	CCTTC	2 cut(s)	132, 868
HpyCH4IV	ACGT	3 cut(s)	394, 468, 556
HpyCH4V	TGCA	4 cut(s)	73, 242, 485, 701
HpyF10VI	GCNNNNNNNGC	1 cut(s)	802
HpyF3I	CTNAG	4 cut(s)	81, 418, 684, 988
HpySE526I	ACGT	3 cut(s)	394, 468, 556
Hsp92II	CATG	7 cut(s)	77, 108, 336, 493, 615, 827, 868
KroI	GCCGGC	1 cut(s)	1124
KroNI	GCCGGC	1 cut(s)	1126
Kzo9I	GATC	5 cut(s)	110, 154, 604, 952, 1155
LmnI	GCTCC	2 cut(s)	801, 802
Lsp1109I	GCAGC	3 cut(s)	685, 713, 968
LweI	GCATC	1 cut(s)	1004
MaeI	CTAG	3 cut(s)	380, 452, 1159
MaeII	ACGT	3 cut(s)	394, 468, 556
MaeIII	GTNAC	2 cut(s)	315, 425
MalI	GATC	5 cut(s)	112, 156, 606, 954, 1157
MboI	GATC	5 cut(s)	110, 154, 604, 952, 1155
MboII	GAAGA	7 cut(s)	469, 705, 781, 784, 787, 986, 1129
MflI	RGATCY	1 cut(s)	110
MluCI	AATT	5 cut(s)	26, 628, 910, 1024, 1077
MlyI	GAGTC	1 cut(s)	209
MmeI	TCCRAC	2 cut(s)	589, 882
Mph1103I	ATGCAT	1 cut(s)	75
MroNI	GCCGGC	1 cut(s)	1124
MseI	TTAA	5 cut(s)	290, 372, 543, 549, 720
MslI	CAYNNNNRTG	3 cut(s)	264, 267, 1095
MspI	CCGG	2 cut(s)	799, 1125
MspR9I	CCNGG	2 cut(s)	800, 1011
Mva1269I	GAATGC	1 cut(s)	75
MvaI	CCWGG	1 cut(s)	1011
MwoI	GCNNNNNNNGC	1 cut(s)	802
NaeI	GCCGGC	1 cut(s)	1126
NciI	CCSGG	1 cut(s)	800
NdeII	GATC	5 cut(s)	110, 154, 604, 952, 1155
NgoMIV	GCCGGC	1 cut(s)	1124
NheI	GCTAGC	1 cut(s)	451
NlaIII	CATG	7 cut(s)	77, 108, 336, 493, 615, 827, 868
NlaIV	GGNNCC	1 cut(s)	1105
NsiI	ATGCAT	1 cut(s)	75
NspI	RCATGY	2 cut(s)	77, 868
PctI	GAATGC	1 cut(s)	75
PdiI	GCCGGC	1 cut(s)	1126
PfeI	GAWTC	2 cut(s)	710, 791
Pfl23II	CGTACG	1 cut(s)	391
PflMI	CCANNNNNTGG	1 cut(s)	614
PfoI	TCCNGGA	1 cut(s)	798
PkrI	GCNGC	3 cut(s)	700, 703, 983
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
Ppu21I	YACGTR	1 cut(s)	395
Psp1406I	AACGTT	1 cut(s)	556
Psp6I	CCWGG	1 cut(s)	1009
PspGI	CCWGG	1 cut(s)	1009
PspLI	CGTACG	1 cut(s)	391
PspN4I	GGNNCC	1 cut(s)	1105
PspPI	GGNCC	1 cut(s)	1104
PstI	CTGCAG	2 cut(s)	487, 703
PsuI	RGATCY	1 cut(s)	110
RsaI	GTAC	4 cut(s)	50, 393, 747, 782
RsaNI	GTAC	4 cut(s)	49, 392, 746, 781
RseI	CAYNNNNRTG	3 cut(s)	264, 267, 1095
SaqAI	TTAA	5 cut(s)	290, 372, 543, 549, 720
SatI	GCNGC	3 cut(s)	699, 702, 982
Sau3AI	GATC	5 cut(s)	110, 154, 604, 952, 1155
Sau96I	GGNCC	1 cut(s)	1104
ScaI	AGTACT	1 cut(s)	782
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	2 cut(s)	800, 1011
SfaNI	GCATC	1 cut(s)	1004
SfcI	CTRYAG	3 cut(s)	195, 483, 699
SinI	GGWCC	1 cut(s)	1104
SmiMI	CAYNNNNRTG	3 cut(s)	264, 267, 1095
SmlI	CTYRAG	3 cut(s)	137, 150, 446
SmoI	CTYRAG	3 cut(s)	137, 150, 446
Sse9I	AATT	5 cut(s)	26, 628, 910, 1024, 1077
SsiI	CCGC	2 cut(s)	5, 1107
SspMI	CTAG	3 cut(s)	380, 452, 1159
StyD4I	CCNGG	2 cut(s)	798, 1009
StyI	CCWWGG	2 cut(s)	359, 1018
TaiI	ACGT	3 cut(s)	397, 471, 559
TaqI	TCGA	3 cut(s)	471, 816, 955
TasI	AATT	5 cut(s)	26, 628, 910, 1024, 1077
TatI	WGTACW	1 cut(s)	780
TfiI	GAWTC	2 cut(s)	710, 791
Tru1I	TTAA	5 cut(s)	290, 372, 543, 549, 720
Tru9I	TTAA	5 cut(s)	290, 372, 543, 549, 720
TscAI	CASTG	1 cut(s)	1122
TseI	GCWGC	3 cut(s)	698, 701, 981
TspDTI	ATGAA	3 cut(s)	114, 285, 1059
TspGWI	ACGGA	2 cut(s)	77, 1130
TspRI	CASTG	1 cut(s)	1122
Van91I	CCANNNNNTGG	1 cut(s)	614
VpaK11BI	GGWCC	1 cut(s)	1104
XceI	RCATGY	2 cut(s)	77, 868
XmiI	GTMKAC	1 cut(s)	830
XspI	CTAG	3 cut(s)	380, 452, 1159
ZrmI	AGTACT	1 cut(s)	782
Zsp2I	ATGCAT	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.