Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001150

Physical Location & Seq

Genomic Coordinates Reverse (-)

11452914 .. 11454053

Gene Structure 1140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG134300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGCTGGTAGAGATATCCCAGATGAATTGATAGAGATAATCCTAAAGCACCTTGACCTTACAAACGAAACTGATATTAATCGATTCCGTGCCGTCTGTCAATCATGGAGGTCTTCTATTCCTAGATTTGAGAGAAAGCTCCTATTACCCAACAGATTTGAGATAGAATCTGACTCCTGGACTCATTGTTTCTTACCCTCCAAGACCGAGAGCATAGTCTATCATATTACACCACTTGCCGATGATCCCGATCGAAAGCAAAGGGGCTGGCTAATTAGGTTAGATAGTGACGGTAAGTTAGTCGATCCATTATCCCAAACCGACTACAAAGGAAGGACACCATTCCGGCCAAAGGTAATAAACTTTCTTGACTTTCGCGTATTTGAATTGGCAAGAACTTATTGTAGTGGCCACTGGAATAAGATGGCCGTGTCCGAGAACCTTGATGTCCCTGCGGTCATGATGTTGAGGGATAAAATACTGTATGGTGGAAAACTAGGTCTTCACGTCAGAGATGCAACCAAGCTCTACCTAAATCCAGATTATCCTGATGGTGTTGCCTTGAATAGAAAGACAAAGACTCCTGTTGATGATGTTATTTTTTGTCAAGGAAAGTTTTATGGTGTCTCAGAGACTGGGGGAGCTATAGTGATGGATTCTTCATGTAATTTTAAAGCGGTATACGTAGCGTGGCCAATATGTAATTTCATCAGTTGTGACAAGAAGATGTATTTGGTGGAATCACTCGGGGAGTTGTTGTTAGTTGAGAGATTAGGGCCTAGATTCATCGGCGAAGGTTATTTGGTGGACAATGTGCTCAACAAGGAAGTTGTATTCATGGTTTACAAGTTGGAAGAAAGGGAGGGATGGGTGGAGATGAAAGCTTCAGAATTAAGTGATCGAATATTGTTTGTGGCTGATGGTCTCTTTAGCTTCTCTGTTTCTGCTAAAGAGTTCCCAGGATGCCGAGGGAGTTGCATTTATTTCTCTTATGAACGTCGAGTTGCAAGGGGTACTCCTAAAAGTATCTCTAGTCAGATTGGAGTGTTCAACTTATATACGCAAAGGGCATCGCAGTTAGGATCTTATCCAGCCAGTGCTAATATCTTTTTGCCACCCCCGACTTGGCCTAGGCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

379

Amino Acids

43.26

Weight (kDa)

7.99

Isoelectric Point (pI)

34.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	5 - 44	3.3e-06	F-box domain
Beta-prop_KIB1-4	PF03478	87 - 351	4e-28	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001150)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10320 FvH4_1g10321 FvH4_1g10850
malus_domestica	MD14G1159500.v1.1 MD15G1237600.v1.1
prunus_persica	Prupe.7G176500_v2.0.a1 Prupe.7G176700_v2.0.a1 Prupe.7G176800_v2.0.a1 Prupe.7G176900_v2.0.a1
pyrus_communis	pycom02g09650 pycom02g09800 pycom14g13320 pycom15g21130
rosa_chinensis	RchiOBHm_Chr2g0097161 RchiOBHm_Chr2g0097171 RchiOBHm_Chr2g0098141 RchiOBHm_Chr2g0099621
rosa_laevigata	RLG00000014898 RLG00000016709 RLG00000016710 RLG00000016759 RLG00000016765 RLG00000016898
rosa_multiflora	Rmu_co8490487.1_g000001 Rmu_sc0001182.1_g000008 Rmu_sc0001182.1_g000009 Rmu_sc0002880.1_g000006 Rmu_sc0005120.1_g000014
rosa_roxburghii	Rroxscaffold_2G00142910 Rroxscaffold_2G00144250 Rroxscaffold_2G00144300 Rroxscaffold_2G00144910 Rroxscaffold_2G00144920
rosa_rugosa	Rorug02G0064900.1 Rorug02G0065400 Rorug02G0070300 Rorug02G0070300 Rorug02G0070400 Rorug02G0081700
rosa_samantha	Rh1CG355800 Rh2AG111900 Rh2AG117600 Rh2AG117900 Rh2BG114000 Rh2BG114100 Rh2BG120500 Rh2BG134300 Rh2CG116200 Rh2CG135200 Rh2DG115200 Rh2DG115300 Rh2DG115400 Rh2DG122200 Rh2DG135700
rosa_wichuraiana	Rw2G008710 Rw2G009180 Rw2G009210 Rw2G010130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	681
AccII	CGCG	1 cut(s)	378
AciI	CCGC	2 cut(s)	455, 677
AclWI	GGATC	3 cut(s)	239, 299, 1090
AcoI	YGGCCR	4 cut(s)	347, 409, 426, 692
AcuI	CTGAAG	1 cut(s)	870
AfaI	GTAC	1 cut(s)	1015
AfiI	CCNNNNNNNGG	2 cut(s)	352, 1125
AgsI	TTSAA	3 cut(s)	386, 565, 1051
AjiI	CACGTC	1 cut(s)	508
AjnI	CCWGG	2 cut(s)	176, 958
AjuI	GAANNNNNNNTTGG	2 cut(s)	716, 748
AluBI	AGCT	5 cut(s)	139, 526, 644, 884, 933
AluI	AGCT	5 cut(s)	139, 526, 644, 884, 933
Alw21I	GWGCWC	1 cut(s)	819
Alw26I	GTCTC	3 cut(s)	626, 631, 929
AlwI	GGATC	3 cut(s)	239, 299, 1090
AlwNI	CAGNNNCTG	1 cut(s)	635
Ama87I	CYCGRG	1 cut(s)	746
AoxI	GGCC	7 cut(s)	347, 409, 426, 692, 776, 1127, 1133
AseI	ATTAAT	1 cut(s)	78
AspA2I	CCTAGG	1 cut(s)	1130
AspS9I	GGNCC	2 cut(s)	776, 1134
AvaI	CYCGRG	1 cut(s)	746
AvrII	CCTAGG	1 cut(s)	1130
BalI	TGGCCA	2 cut(s)	411, 694
BbsI	GAAGAC	2 cut(s)	105, 494
Bbv12I	GWGCWC	1 cut(s)	819
BccI	CCATC	5 cut(s)	418, 545, 646, 861, 914
BceAI	ACGGC	2 cut(s)	77, 413
BcgI	CGANNNNNNTGC	2 cut(s)	957, 991
BciT130I	CCWGG	2 cut(s)	178, 960
BcoDI	GTCTC	3 cut(s)	626, 631, 929
BfaI	CTAG	5 cut(s)	123, 497, 780, 1032, 1131
BfmI	CTRYAG	1 cut(s)	645
BlnI	CCTAGG	1 cut(s)	1130
Bme1390I	CCNGG	2 cut(s)	178, 960
BmeT110I	CYCGRG	1 cut(s)	746
BmgBI	CACGTC	1 cut(s)	508
BmgT120I	GGNCC	2 cut(s)	776, 1134
BmrFI	CCNGG	2 cut(s)	178, 960
BmrI	ACTGGG	1 cut(s)	645
BmsI	GCATC	3 cut(s)	505, 953, 1079
BmuI	ACTGGG	1 cut(s)	645
BpiI	GAAGAC	2 cut(s)	105, 494
Bsa29I	ATCGAT	1 cut(s)	82
BsaAI	YACGTR	1 cut(s)	685
BsaBI	GATNNNNATC	2 cut(s)	78, 249
BsaI	GGTCTC	1 cut(s)	929
BsaJI	CCNNGG	3 cut(s)	958, 967, 1130
BsaXI	ACNNNNNCTCC	6 cut(s)	565, 595, 633, 663, 743, 773
Bsc4I	CCNNNNNNNGG	2 cut(s)	352, 1125
Bse1I	ACTGG	3 cut(s)	419, 640, 1095
Bse8I	GATNNNNATC	2 cut(s)	78, 249
BseBI	CCWGG	2 cut(s)	178, 960
BseCI	ATCGAT	1 cut(s)	82
BseDI	CCNNGG	3 cut(s)	958, 967, 1130
BseGI	GGATG	2 cut(s)	872, 968
BseJI	GATNNNNATC	2 cut(s)	78, 249
BseLI	CCNNNNNNNGG	2 cut(s)	352, 1125
BseMII	CTCAG	1 cut(s)	642
BseNI	ACTGG	3 cut(s)	419, 640, 1095
Bsh1236I	CGCG	1 cut(s)	378
Bsh1285I	CGRYCG	1 cut(s)	253
BshFI	GGCC	7 cut(s)	349, 411, 428, 694, 778, 1129, 1135
BshVI	ATCGAT	1 cut(s)	82
BsiEI	CGRYCG	1 cut(s)	253
BsiHKAI	GWGCWC	1 cut(s)	819
BsiHKCI	CYCGRG	1 cut(s)	746
BsiSI	CCGG	1 cut(s)	346
BslFI	GGGAC	1 cut(s)	434
BslI	CCNNNNNNNGG	2 cut(s)	352, 1125
BsmAI	GTCTC	3 cut(s)	626, 631, 929
BsmFI	GGGAC	1 cut(s)	434
BsnI	GGCC	7 cut(s)	349, 411, 428, 694, 778, 1129, 1135
Bso31I	GGTCTC	1 cut(s)	929
BsoBI	CYCGRG	1 cut(s)	746
Bsp1286I	GDGCHC	1 cut(s)	819
Bsp143I	GATC	5 cut(s)	244, 250, 304, 898, 1082
BspACI	CCGC	2 cut(s)	455, 677
BspANI	GGCC	7 cut(s)	349, 411, 428, 694, 778, 1129, 1135
BspCNI	CTCAG	1 cut(s)	641
BspDI	ATCGAT	1 cut(s)	82
BspFNI	CGCG	1 cut(s)	378
BspHI	TCATGA	1 cut(s)	459
BspPI	GGATC	3 cut(s)	239, 299, 1090
BspTNI	GGTCTC	1 cut(s)	929
BsrI	ACTGG	3 cut(s)	419, 640, 1095
BssECI	CCNNGG	3 cut(s)	958, 967, 1130
BssMI	GATC	5 cut(s)	244, 250, 304, 898, 1082
BssNAI	GTATAC	1 cut(s)	682
BssT1I	CCWWGG	1 cut(s)	1130
Bst1107I	GTATAC	1 cut(s)	682
Bst2UI	CCWGG	2 cut(s)	178, 960
Bst4CI	ACNGT	2 cut(s)	293, 483
BstBAI	YACGTR	1 cut(s)	685
BstC8I	GCNNGC	1 cut(s)	269
BstDEI	CTNAG	1 cut(s)	628
BstF5I	GGATG	2 cut(s)	872, 968
BstFNI	CGCG	1 cut(s)	378
BstKTI	GATC	5 cut(s)	247, 253, 307, 901, 1085
BstMAI	GTCTC	3 cut(s)	626, 631, 929
BstMBI	GATC	5 cut(s)	244, 250, 304, 898, 1082
BstMCI	CGRYCG	1 cut(s)	253
BstNI	CCWGG	2 cut(s)	178, 960
BstSCI	CCNGG	2 cut(s)	176, 958
BstSFI	CTRYAG	1 cut(s)	645
BstSNI	TACGTA	1 cut(s)	685
BstUI	CGCG	1 cut(s)	378
BstV2I	GAAGAC	2 cut(s)	105, 494
BstX2I	RGATCY	1 cut(s)	1082
BstYI	RGATCY	1 cut(s)	1082
BstZ17I	GTATAC	1 cut(s)	682
Bsu15I	ATCGAT	1 cut(s)	82
BsuRI	GGCC	7 cut(s)	349, 411, 428, 694, 778, 1129, 1135
BsuTUI	ATCGAT	1 cut(s)	82
BtgZI	GCGATG	1 cut(s)	1056
BtrI	CACGTC	1 cut(s)	508
BtsCI	GGATG	2 cut(s)	872, 968
BtsIMutI	CAGTG	2 cut(s)	412, 1102
Cac8I	GCNNGC	1 cut(s)	269
CaiI	CAGNNNCTG	1 cut(s)	635
CciI	TCATGA	1 cut(s)	459
Cfr13I	GGNCC	2 cut(s)	776, 1134
ClaI	ATCGAT	1 cut(s)	82
Csp6I	GTAC	1 cut(s)	1014
CviAII	CATG	4 cut(s)	105, 460, 663, 838
CviQI	GTAC	1 cut(s)	1014
DdeI	CTNAG	1 cut(s)	628
DpnI	GATC	5 cut(s)	246, 252, 306, 900, 1084
DpnII	GATC	5 cut(s)	244, 250, 304, 898, 1082
DraI	TTTAAA	1 cut(s)	673
EaeI	YGGCCR	4 cut(s)	347, 409, 426, 692
Eco105I	TACGTA	1 cut(s)	685
Eco130I	CCWWGG	1 cut(s)	1130
Eco31I	GGTCTC	1 cut(s)	929
Eco32I	GATATC	1 cut(s)	16
Eco57I	CTGAAG	1 cut(s)	870
Eco88I	CYCGRG	1 cut(s)	746
EcoO109I	RGGNCCY	2 cut(s)	776, 1134
EcoRII	CCWGG	2 cut(s)	176, 958
EcoRV	GATATC	1 cut(s)	16
EcoT14I	CCWWGG	1 cut(s)	1130
ErhI	CCWWGG	1 cut(s)	1130
FaeI	CATG	4 cut(s)	108, 463, 666, 841
FaqI	GGGAC	1 cut(s)	434
FatI	CATG	4 cut(s)	104, 459, 662, 837
FblI	GTMKAC	1 cut(s)	681
FokI	GGATG	2 cut(s)	879, 975
FspBI	CTAG	5 cut(s)	123, 497, 780, 1032, 1131
HaeIII	GGCC	7 cut(s)	349, 411, 428, 694, 778, 1129, 1135
HapII	CCGG	1 cut(s)	346
Hin1II	CATG	4 cut(s)	108, 463, 666, 841
HindIII	AAGCTT	1 cut(s)	882
HinfI	GANTC	8 cut(s)	84, 167, 173, 181, 580, 656, 740, 783
HpaII	CCGG	1 cut(s)	346
Hpy166II	GTNNAC	3 cut(s)	682, 808, 844
Hpy188I	TCNGA	6 cut(s)	172, 436, 512, 631, 889, 1038
Hpy188III	TCNNGA	5 cut(s)	248, 368, 460, 539, 548
Hpy8I	GTNNAC	3 cut(s)	682, 808, 844
Hpy99I	CGWCG	1 cut(s)	1002
HpyAV	CCTTC	2 cut(s)	327, 788
HpyCH4III	ACNGT	2 cut(s)	293, 483
HpyCH4IV	ACGT	3 cut(s)	507, 684, 997
HpyCH4V	TGCA	3 cut(s)	518, 978, 1007
HpyF3I	CTNAG	1 cut(s)	628
HpySE526I	ACGT	3 cut(s)	507, 684, 997
Hsp92II	CATG	4 cut(s)	108, 463, 666, 841
Kzo9I	GATC	5 cut(s)	244, 250, 304, 898, 1082
LmnI	GCTCC	2 cut(s)	144, 641
LweI	GCATC	3 cut(s)	505, 953, 1079
MaeI	CTAG	5 cut(s)	123, 497, 780, 1032, 1131
MaeII	ACGT	3 cut(s)	507, 684, 997
MaeIII	GTNAC	2 cut(s)	287, 716
MalI	GATC	5 cut(s)	246, 252, 306, 900, 1084
MboI	GATC	5 cut(s)	244, 250, 304, 898, 1082
MboII	GAAGA	5 cut(s)	105, 494, 651, 736, 866
MflI	RGATCY	1 cut(s)	1082
MhlI	GDGCHC	1 cut(s)	819
MlsI	TGGCCA	2 cut(s)	411, 694
MluCI	AATT	6 cut(s)	26, 273, 386, 667, 703, 890
MluNI	TGGCCA	2 cut(s)	411, 694
MlyI	GAGTC	3 cut(s)	167, 175, 574
MmeI	TCCRAC	1 cut(s)	831
MnlI	CCTC	5 cut(s)	102, 208, 462, 856, 962
Mox20I	TGGCCA	2 cut(s)	411, 694
MscI	TGGCCA	2 cut(s)	411, 694
MseI	TTAA	3 cut(s)	78, 672, 893
Msp20I	TGGCCA	2 cut(s)	411, 694
MspI	CCGG	1 cut(s)	346
MspR9I	CCNGG	2 cut(s)	178, 960
MvaI	CCWGG	2 cut(s)	178, 960
MvnI	CGCG	1 cut(s)	378
NdeII	GATC	5 cut(s)	244, 250, 304, 898, 1082
NlaIII	CATG	4 cut(s)	108, 463, 666, 841
NmeAIII	GCCGAG	1 cut(s)	992
NmuCI	GTSAC	2 cut(s)	287, 716
PagI	TCATGA	1 cut(s)	459
PfeI	GAWTC	5 cut(s)	84, 167, 656, 740, 783
PfoI	TCCNGGA	1 cut(s)	176
Ple19I	CGATCG	1 cut(s)	253
PleI	GAGTC	3 cut(s)	167, 175, 574
PpsI	GAGTC	3 cut(s)	167, 175, 574
Ppu21I	YACGTR	1 cut(s)	685
PshBI	ATTAAT	1 cut(s)	78
Psp6I	CCWGG	2 cut(s)	176, 958
PspGI	CCWGG	2 cut(s)	176, 958
PspPI	GGNCC	2 cut(s)	776, 1134
PstNI	CAGNNNCTG	1 cut(s)	635
PsuI	RGATCY	1 cut(s)	1082
PvuI	CGATCG	1 cut(s)	253
RsaI	GTAC	1 cut(s)	1015
RsaNI	GTAC	1 cut(s)	1014
SaqAI	TTAA	3 cut(s)	78, 672, 893
Sau3AI	GATC	5 cut(s)	244, 250, 304, 898, 1082
Sau96I	GGNCC	2 cut(s)	776, 1134
SchI	GAGTC	3 cut(s)	167, 175, 574
ScrFI	CCNGG	2 cut(s)	178, 960
SduI	GDGCHC	1 cut(s)	819
SfaNI	GCATC	3 cut(s)	505, 953, 1079
SfcI	CTRYAG	1 cut(s)	645
SnaBI	TACGTA	1 cut(s)	685
Sse9I	AATT	6 cut(s)	26, 273, 386, 667, 703, 890
SsiI	CCGC	2 cut(s)	455, 677
SspI	AATATT	1 cut(s)	906
SspMI	CTAG	5 cut(s)	123, 497, 780, 1032, 1131
StyD4I	CCNGG	2 cut(s)	176, 958
StyI	CCWWGG	1 cut(s)	1130
TaaI	ACNGT	2 cut(s)	293, 483
TaiI	ACGT	3 cut(s)	510, 687, 1000
TaqI	TCGA	5 cut(s)	82, 253, 303, 901, 1000
TaqII	GACCGA	1 cut(s)	221
TasI	AATT	6 cut(s)	26, 273, 386, 667, 703, 890
TfiI	GAWTC	5 cut(s)	84, 167, 656, 740, 783
Tru1I	TTAA	3 cut(s)	78, 672, 893
Tru9I	TTAA	3 cut(s)	78, 672, 893
TscAI	CASTG	2 cut(s)	419, 1102
TseFI	GTSAC	2 cut(s)	287, 716
Tsp45I	GTSAC	2 cut(s)	287, 716
TspDTI	ATGAA	7 cut(s)	39, 651, 697, 775, 826, 893, 1008
TspGWI	ACGGA	1 cut(s)	77
TspRI	CASTG	2 cut(s)	419, 1102
VspI	ATTAAT	1 cut(s)	78
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1122
XmaJI	CCTAGG	1 cut(s)	1130
XmiI	GTMKAC	1 cut(s)	681
XspI	CTAG	5 cut(s)	123, 497, 780, 1032, 1131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.