Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001150

Physical Location & Seq

Genomic Coordinates Forward (+)

80982191 .. 80984196

Gene Structure 2006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00142910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGAATCTGACTCCCGGACTCATTGTTTCTTACCCTCCAAGACCGAGAGCATAGTCTATCATATTACACCACTTGCCGATGATCCCGATCGAAAGCAAAGGGACTGGCTAATTAGGTTAGATAGTGACGGTAAGTTAGTCGATCCATTATCCCAAACCGACTACAAAGGAAGGACACCATTCCGGCCAAAGGTAATAAACTTTCTTGACTTTCGCGTATTTGAATTGGCAAGAACTTATTGTAGTGGCCACTGGAATAAGATGGTCGTGTCCGAGAACCTTGATGTCCCTGCGGTCATGTTGTTGAGGGATAAAATATTGTATGGTGGAAAACTAGGTCTTCACGTCAAAGATGCAACCAAGCTCTACCTAAATCCGGATTATCCTGATGTTGTTGCCTTGAATAGAAAGACAAAGACTCCTGTTGATGATCGGCGAAGCAACAAAGCAAGGTTCCGACGAAGCAACAAATCAAGGCTCGACGGCGAGACAACGGATCTAGGATCCGGCGGCGAGGAGGAACTACTAACCCACAAAATGAAGCCCTGTGTCTCTTCCGACGAAGCCCAATCCAATTCCAAGGGGGAGGAGCCGATCAACGACGAAGAGGACAAGGAAGAGCTAGAGGTCGTCGCTCACTCCGCCGACTCCGACGATGAAGACGCCGCCGAGGACAACTCCCACGGCTCGATGACGAGTCCGCAACGGCCGAGAATGACGATGACTTTGAAGAAGAGGTACATTTTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

250

Amino Acids

28.53

Weight (kDa)

5.59

Isoelectric Point (pI)

48.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001150)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10320 FvH4_1g10321 FvH4_1g10850
malus_domestica	MD14G1159500.v1.1 MD15G1237600.v1.1
prunus_persica	Prupe.7G176500_v2.0.a1 Prupe.7G176700_v2.0.a1 Prupe.7G176800_v2.0.a1 Prupe.7G176900_v2.0.a1
pyrus_communis	pycom02g09650 pycom02g09800 pycom14g13320 pycom15g21130
rosa_chinensis	RchiOBHm_Chr2g0097161 RchiOBHm_Chr2g0097171 RchiOBHm_Chr2g0098141 RchiOBHm_Chr2g0099621
rosa_laevigata	RLG00000014898 RLG00000016709 RLG00000016710 RLG00000016759 RLG00000016765 RLG00000016898
rosa_multiflora	Rmu_co8490487.1_g000001 Rmu_sc0001182.1_g000008 Rmu_sc0001182.1_g000009 Rmu_sc0002880.1_g000006 Rmu_sc0005120.1_g000014
rosa_roxburghii	Rroxscaffold_2G00142910 Rroxscaffold_2G00144250 Rroxscaffold_2G00144300 Rroxscaffold_2G00144910 Rroxscaffold_2G00144920
rosa_rugosa	Rorug02G0064900.1 Rorug02G0065400 Rorug02G0070300 Rorug02G0070300 Rorug02G0070400 Rorug02G0081700
rosa_samantha	Rh1CG355800 Rh2AG111900 Rh2AG117600 Rh2AG117900 Rh2BG114000 Rh2BG114100 Rh2BG120500 Rh2BG134300 Rh2CG116200 Rh2CG135200 Rh2DG115200 Rh2DG115300 Rh2DG115400 Rh2DG122200 Rh2DG135700
rosa_wichuraiana	Rw2G008710 Rw2G009180 Rw2G009210 Rw2G010130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	216
AccIII	TCCGGA	1 cut(s)	376
AciI	CCGC	5 cut(s)	293, 510, 642, 666, 701
AclWI	GGATC	5 cut(s)	77, 137, 498, 504, 511
AcoI	YGGCCR	3 cut(s)	185, 247, 707
AcyI	GRCGYC	1 cut(s)	663
AfaI	GTAC	1 cut(s)	740
AfiI	CCNNNNNNNGG	2 cut(s)	190, 376
AgsI	TTSAA	3 cut(s)	224, 403, 730
AjiI	CACGTC	1 cut(s)	346
AluBI	AGCT	2 cut(s)	364, 622
AluI	AGCT	2 cut(s)	364, 622
Alw26I	GTCTC	2 cut(s)	482, 556
AlwI	GGATC	5 cut(s)	77, 137, 498, 504, 511
Aor13HI	TCCGGA	1 cut(s)	376
AoxI	GGCC	3 cut(s)	185, 247, 707
ArsI	GACNNNNNNTTYG	2 cut(s)	709, 741
AsuC2I	CCSGG	1 cut(s)	16
BalI	TGGCCA	1 cut(s)	249
BamHI	GGATCC	1 cut(s)	503
BarI	GAAGNNNNNNTAC	1 cut(s)	722
BbsI	GAAGAC	2 cut(s)	332, 666
BccI	CCATC	1 cut(s)	256
BceAI	ACGGC	3 cut(s)	499, 700, 722
BcnI	CCSGG	1 cut(s)	16
BcoDI	GTCTC	2 cut(s)	482, 556
BfaI	CTAG	3 cut(s)	335, 500, 623
BisI	GCNGC	2 cut(s)	511, 666
BlsI	GCNGC	2 cut(s)	512, 667
Bme1390I	CCNGG	1 cut(s)	16
BmgBI	CACGTC	1 cut(s)	346
BmiI	GGNNCC	3 cut(s)	455, 505, 591
BmrFI	CCNGG	1 cut(s)	16
BmsI	GCATC	1 cut(s)	343
BpiI	GAAGAC	2 cut(s)	332, 666
BplI	GAGNNNNNCTC	2 cut(s)	662, 694
BpuMI	CCSGG	1 cut(s)	16
BsaBI	GATNNNNATC	1 cut(s)	87
BsaHI	GRCGYC	1 cut(s)	663
BsaJI	CCNNGG	3 cut(s)	579, 669, 682
BsaWI	WCCGGW	1 cut(s)	376
BsaXI	ACNNNNNCTCC	2 cut(s)	403, 433
Bsc4I	CCNNNNNNNGG	2 cut(s)	190, 376
Bse1I	ACTGG	2 cut(s)	110, 257
Bse8I	GATNNNNATC	1 cut(s)	87
BseAI	TCCGGA	1 cut(s)	376
BseDI	CCNNGG	3 cut(s)	579, 669, 682
BseJI	GATNNNNATC	1 cut(s)	87
BseLI	CCNNNNNNNGG	2 cut(s)	190, 376
BseNI	ACTGG	2 cut(s)	110, 257
BseRI	GAGGAG	2 cut(s)	530, 602
BseX3I	CGGCCG	1 cut(s)	707
Bsh1236I	CGCG	1 cut(s)	216
Bsh1285I	CGRYCG	2 cut(s)	91, 710
BshFI	GGCC	3 cut(s)	187, 249, 709
BsiEI	CGRYCG	2 cut(s)	91, 710
BsiSI	CCGG	4 cut(s)	16, 184, 377, 507
BslFI	GGGAC	2 cut(s)	116, 272
BslI	CCNNNNNNNGG	2 cut(s)	190, 376
BsmAI	GTCTC	2 cut(s)	482, 556
BsmFI	GGGAC	2 cut(s)	116, 272
BsnI	GGCC	3 cut(s)	187, 249, 709
Bsp13I	TCCGGA	1 cut(s)	376
Bsp143I	GATC	7 cut(s)	82, 88, 142, 430, 496, 503, 594
BspACI	CCGC	5 cut(s)	293, 510, 642, 666, 701
BspANI	GGCC	3 cut(s)	187, 249, 709
BspEI	TCCGGA	1 cut(s)	376
BspFNI	CGCG	1 cut(s)	216
BspLI	GGNNCC	3 cut(s)	455, 505, 591
BspPI	GGATC	5 cut(s)	77, 137, 498, 504, 511
BspQI	GCTCTTC	1 cut(s)	612
BsrI	ACTGG	2 cut(s)	110, 257
BssECI	CCNNGG	3 cut(s)	579, 669, 682
BssMI	GATC	7 cut(s)	82, 88, 142, 430, 496, 503, 594
BssNI	GRCGYC	1 cut(s)	663
BssT1I	CCWWGG	1 cut(s)	579
Bst4CI	ACNGT	1 cut(s)	131
Bst6I	CTCTTC	4 cut(s)	559, 600, 612, 728
BstACI	GRCGYC	1 cut(s)	663
BstDSI	CCRYGG	1 cut(s)	682
BstFNI	CGCG	1 cut(s)	216
BstKTI	GATC	7 cut(s)	85, 91, 145, 433, 499, 506, 597
BstMAI	GTCTC	2 cut(s)	482, 556
BstMBI	GATC	7 cut(s)	82, 88, 142, 430, 496, 503, 594
BstMCI	CGRYCG	2 cut(s)	91, 710
BstMWI	GCNNNNNNNGC	1 cut(s)	641
BstSCI	CCNGG	1 cut(s)	14
BstUI	CGCG	1 cut(s)	216
BstV2I	GAAGAC	2 cut(s)	332, 666
BstX2I	RGATCY	2 cut(s)	496, 503
BstYI	RGATCY	2 cut(s)	496, 503
BstZI	CGGCCG	1 cut(s)	707
BsuRI	GGCC	3 cut(s)	187, 249, 709
BtgI	CCRYGG	1 cut(s)	682
BtrI	CACGTC	1 cut(s)	346
BtsIMutI	CAGTG	1 cut(s)	250
CseI	GACGC	1 cut(s)	671
Csp6I	GTAC	1 cut(s)	739
CviAII	CATG	1 cut(s)	298
CviQI	GTAC	1 cut(s)	739
DpnI	GATC	7 cut(s)	84, 90, 144, 432, 498, 505, 596
DpnII	GATC	7 cut(s)	82, 88, 142, 430, 496, 503, 594
EaeI	YGGCCR	3 cut(s)	185, 247, 707
EagI	CGGCCG	1 cut(s)	707
Eam1104I	CTCTTC	4 cut(s)	559, 600, 612, 728
EarI	CTCTTC	4 cut(s)	559, 600, 612, 728
EciI	GGCGGA	1 cut(s)	631
EclXI	CGGCCG	1 cut(s)	707
Eco130I	CCWWGG	1 cut(s)	579
Eco52I	CGGCCG	1 cut(s)	707
EcoT14I	CCWWGG	1 cut(s)	579
ErhI	CCWWGG	1 cut(s)	579
FaeI	CATG	1 cut(s)	301
FaiI	YATR	4 cut(s)	53, 63, 299, 324
FaqI	GGGAC	2 cut(s)	116, 272
FatI	CATG	1 cut(s)	297
Fnu4HI	GCNGC	2 cut(s)	511, 666
Fsp4HI	GCNGC	2 cut(s)	511, 666
FspBI	CTAG	3 cut(s)	335, 500, 623
GluI	GCNGC	2 cut(s)	511, 666
HaeIII	GGCC	3 cut(s)	187, 249, 709
HapII	CCGG	4 cut(s)	16, 184, 377, 507
HgaI	GACGC	1 cut(s)	671
Hin1I	GRCGYC	1 cut(s)	663
Hin1II	CATG	1 cut(s)	301
HinfI	GANTC	6 cut(s)	5, 11, 19, 418, 647, 697
HpaII	CCGG	4 cut(s)	16, 184, 377, 507
Hpy188I	TCNGA	5 cut(s)	10, 274, 458, 559, 652
Hpy188III	TCNNGA	4 cut(s)	86, 206, 377, 386
Hpy99I	CGWCG	6 cut(s)	462, 485, 563, 605, 635, 656
HpyAV	CCTTC	1 cut(s)	165
HpyCH4III	ACNGT	1 cut(s)	131
HpyCH4IV	ACGT	1 cut(s)	345
HpyCH4V	TGCA	1 cut(s)	356
HpyF10VI	GCNNNNNNNGC	1 cut(s)	641
HpySE526I	ACGT	1 cut(s)	345
Hsp92I	GRCGYC	1 cut(s)	663
Hsp92II	CATG	1 cut(s)	301
Kpn2I	TCCGGA	1 cut(s)	376
Kzo9I	GATC	7 cut(s)	82, 88, 142, 430, 496, 503, 594
LguI	GCTCTTC	1 cut(s)	612
LmnI	GCTCC	1 cut(s)	589
LweI	GCATC	1 cut(s)	343
MaeI	CTAG	3 cut(s)	335, 500, 623
MaeII	ACGT	1 cut(s)	345
MaeIII	GTNAC	1 cut(s)	125
MalI	GATC	7 cut(s)	84, 90, 144, 432, 498, 505, 596
MboI	GATC	7 cut(s)	82, 88, 142, 430, 496, 503, 594
MboII	GAAGA	7 cut(s)	332, 546, 617, 629, 671, 742, 745
MflI	RGATCY	2 cut(s)	496, 503
MlsI	TGGCCA	1 cut(s)	249
MluCI	AATT	3 cut(s)	111, 224, 574
MluNI	TGGCCA	1 cut(s)	249
MlyI	GAGTC	5 cut(s)	5, 13, 412, 641, 706
MmeI	TCCRAC	3 cut(s)	481, 582, 675
MnlI	CCTC	9 cut(s)	46, 300, 508, 511, 580, 601, 619, 664, 729
Mox20I	TGGCCA	1 cut(s)	249
MroI	TCCGGA	1 cut(s)	376
MscI	TGGCCA	1 cut(s)	249
Msp20I	TGGCCA	1 cut(s)	249
MspI	CCGG	4 cut(s)	16, 184, 377, 507
MspR9I	CCNGG	1 cut(s)	16
MvnI	CGCG	1 cut(s)	216
MwoI	GCNNNNNNNGC	1 cut(s)	641
NciI	CCSGG	1 cut(s)	16
NdeII	GATC	7 cut(s)	82, 88, 142, 430, 496, 503, 594
NlaIII	CATG	1 cut(s)	301
NlaIV	GGNNCC	3 cut(s)	455, 505, 591
NmeAIII	GCCGAG	2 cut(s)	694, 735
NmuCI	GTSAC	1 cut(s)	125
PciSI	GCTCTTC	1 cut(s)	612
PfeI	GAWTC	1 cut(s)	5
PfoI	TCCNGGA	1 cut(s)	14
PkrI	GCNGC	2 cut(s)	512, 667
Ple19I	CGATCG	1 cut(s)	91
PleI	GAGTC	5 cut(s)	5, 13, 412, 641, 705
PpsI	GAGTC	5 cut(s)	5, 13, 412, 641, 705
PspN4I	GGNNCC	3 cut(s)	455, 505, 591
PsuI	RGATCY	2 cut(s)	496, 503
PvuI	CGATCG	1 cut(s)	91
RsaI	GTAC	1 cut(s)	740
RsaNI	GTAC	1 cut(s)	739
SapI	GCTCTTC	1 cut(s)	612
SatI	GCNGC	2 cut(s)	511, 666
Sau3AI	GATC	7 cut(s)	82, 88, 142, 430, 496, 503, 594
SchI	GAGTC	5 cut(s)	5, 13, 412, 641, 706
ScrFI	CCNGG	1 cut(s)	16
SfaNI	GCATC	1 cut(s)	343
Sse9I	AATT	3 cut(s)	111, 224, 574
SsiI	CCGC	5 cut(s)	293, 510, 642, 666, 701
SspI	AATATT	1 cut(s)	318
SspMI	CTAG	3 cut(s)	335, 500, 623
StyD4I	CCNGG	1 cut(s)	14
StyI	CCWWGG	1 cut(s)	579
TaaI	ACNGT	1 cut(s)	131
TaiI	ACGT	1 cut(s)	348
TaqI	TCGA	4 cut(s)	91, 141, 480, 689
TaqII	GACCGA	1 cut(s)	59
TasI	AATT	3 cut(s)	111, 224, 574
TauI	GCSGC	2 cut(s)	513, 668
TfiI	GAWTC	1 cut(s)	5
TscAI	CASTG	1 cut(s)	257
TseFI	GTSAC	1 cut(s)	125
Tsp45I	GTSAC	1 cut(s)	125
TspDTI	ATGAA	2 cut(s)	554, 672
TspGWI	ACGGA	1 cut(s)	509
TspRI	CASTG	1 cut(s)	257
XspI	CTAG	3 cut(s)	335, 500, 623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.