Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001150

Physical Location & Seq

Genomic Coordinates Reverse (-)

8728115 .. 8730662

Gene Structure 2548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G008710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGCTGGTGATCTTTCAGTTGAATTGTTAGAGAAAGTTGGAAAGTGCCTTAACTTGACCAATGATATTTCTCGATTCCGTGCTGTTTGTCGGTCATGGCGGTCCTCTGTTCCTCCCTTTACAAAAAATAAGCAGCAGCTCCTCTCTCCCATCAGAGGTCCCATACAACTCCCCAAGTATCCTGATAGTAATGGGAACTGGCCTAAGATGTTGAACCTCACCAAGAGGGTGATCTATCATGTGTCCCACAGTTCAAGTACATGGGTTGTTACTGTCAAACTAAAAGAATCGGGTGAAATTGATCGTACGCTAGATCCACTCTTTCAATGCCCATTCTCACGTGAGCAGTTCCCTGAGACATTCCCAGAGGCGTTCAACTTGTTGGATGAAGATGTTCTGGTAGTTGAATTGGCAGAAGCTTATGGTCTAAGAGACATTAGTGAGGCTGGTTGTGATTATAGAGTGGCTATGTCCTTCAATCCTAGTTTATCTACTTCAATGTGGTGGAAGAAGGAGAAGAAGAAGAACTTGGTCGAATCCCTCGGGGAGCTGCTTTTAGTCGAAAGACATGGTTCTACTTTTGTTGCAAAACATTGTTCTGTGGAAGATATGCTCAAGAATGAAGTCAAGTTCAAGGTTTACAAGTTGGATGGAGTTCGGAAGCAATGGGTTGAGATGAAGGGTTCGGATTTGGATGATCGAATATTGTTTGTGGGGGAAGACTGCTGCTTTTCAGTTTCTACTCGAGACTTCCCGGGATGCCAAGGGAATTGCATATATTTTTCTTATGAAGTTTGGTGTGGTAAGAATGTCATCTCTAGTAGAATTGGAGTGTTCCACTTGGATGTTGGGAGGGGTCGCCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

288

Amino Acids

32.9

Weight (kDa)

7.99

Isoelectric Point (pI)

33.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	133 - 279	5.9e-25	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001150)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10320 FvH4_1g10321 FvH4_1g10850
malus_domestica	MD14G1159500.v1.1 MD15G1237600.v1.1
prunus_persica	Prupe.7G176500_v2.0.a1 Prupe.7G176700_v2.0.a1 Prupe.7G176800_v2.0.a1 Prupe.7G176900_v2.0.a1
pyrus_communis	pycom02g09650 pycom02g09800 pycom14g13320 pycom15g21130
rosa_chinensis	RchiOBHm_Chr2g0097161 RchiOBHm_Chr2g0097171 RchiOBHm_Chr2g0098141 RchiOBHm_Chr2g0099621
rosa_laevigata	RLG00000014898 RLG00000016709 RLG00000016710 RLG00000016759 RLG00000016765 RLG00000016898
rosa_multiflora	Rmu_co8490487.1_g000001 Rmu_sc0001182.1_g000008 Rmu_sc0001182.1_g000009 Rmu_sc0002880.1_g000006 Rmu_sc0005120.1_g000014
rosa_roxburghii	Rroxscaffold_2G00142910 Rroxscaffold_2G00144250 Rroxscaffold_2G00144300 Rroxscaffold_2G00144910 Rroxscaffold_2G00144920
rosa_rugosa	Rorug02G0064900.1 Rorug02G0065400 Rorug02G0070300 Rorug02G0070300 Rorug02G0070400 Rorug02G0081700
rosa_samantha	Rh1CG355800 Rh2AG111900 Rh2AG117600 Rh2AG117900 Rh2BG114000 Rh2BG114100 Rh2BG120500 Rh2BG134300 Rh2CG116200 Rh2CG135200 Rh2DG115200 Rh2DG115300 Rh2DG115400 Rh2DG122200 Rh2DG135700
rosa_wichuraiana	Rw2G008710 Rw2G009180 Rw2G009210 Rw2G010130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	100
AclWI	GGATC	1 cut(s)	308
AcvI	CACGTG	1 cut(s)	341
AfaI	GTAC	2 cut(s)	259, 307
AfiI	CCNNNNNNNGG	1 cut(s)	155
AgsI	TTSAA	9 cut(s)	23, 214, 255, 326, 376, 407, 478, 498, 634
AjuI	GAANNNNNNNTTGG	2 cut(s)	512, 544
AluBI	AGCT	3 cut(s)	139, 419, 550
AluI	AGCT	3 cut(s)	139, 419, 550
Alw26I	GTCTC	3 cut(s)	350, 426, 741
AlwI	GGATC	1 cut(s)	308
Ama87I	CYCGRG	3 cut(s)	542, 744, 754
AoxI	GGCC	1 cut(s)	200
ApeKI	GCWGC	4 cut(s)	133, 136, 550, 726
Asp700I	GAANNNNTTC	1 cut(s)	393
AspS9I	GGNCC	2 cut(s)	102, 158
AsuC2I	CCSGG	2 cut(s)	755, 756
AsuHPI	GGTGA	4 cut(s)	20, 211, 241, 305
AvaI	CYCGRG	3 cut(s)	542, 744, 754
AvaII	GGWCC	2 cut(s)	102, 158
BbrPI	CACGTG	1 cut(s)	341
BbsI	GAAGAC	1 cut(s)	726
BbvI	GCAGC	4 cut(s)	145, 148, 537, 713
BccI	CCATC	2 cut(s)	158, 644
BciVI	GTATCC	1 cut(s)	189
BcnI	CCSGG	2 cut(s)	755, 756
BcoDI	GTCTC	3 cut(s)	350, 426, 741
BfaI	CTAG	4 cut(s)	311, 483, 819, 865
BfuI	GTATCC	1 cut(s)	189
BisI	GCNGC	4 cut(s)	134, 137, 551, 727
BlsI	GCNGC	4 cut(s)	135, 138, 552, 728
Bme1390I	CCNGG	2 cut(s)	755, 756
Bme18I	GGWCC	2 cut(s)	102, 158
BmeT110I	CYCGRG	3 cut(s)	542, 744, 754
BmgT120I	GGNCC	2 cut(s)	102, 158
BmiI	GGNNCC	1 cut(s)	160
BmrFI	CCNGG	2 cut(s)	755, 756
BmsI	GCATC	1 cut(s)	749
BpiI	GAAGAC	1 cut(s)	726
BpuEI	CTTGAG	1 cut(s)	599
BpuMI	CCSGG	2 cut(s)	755, 756
BsaAI	YACGTR	1 cut(s)	341
BsaJI	CCNNGG	3 cut(s)	541, 754, 763
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse1I	ACTGG	1 cut(s)	203
Bse3DI	GCAATG	1 cut(s)	671
BseDI	CCNNGG	3 cut(s)	541, 754, 763
BseGI	GGATG	5 cut(s)	391, 655, 700, 764, 850
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseMI	GCAATG	1 cut(s)	671
BseMII	CTCAG	1 cut(s)	345
BseNI	ACTGG	1 cut(s)	203
BseRI	GAGGAG	1 cut(s)	131
BseXI	GCAGC	4 cut(s)	145, 148, 537, 713
BshFI	GGCC	1 cut(s)	202
BsiHKCI	CYCGRG	3 cut(s)	542, 744, 754
BsiSI	CCGG	1 cut(s)	755
BsiWI	CGTACG	1 cut(s)	305
BslFI	GGGAC	2 cut(s)	144, 229
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmAI	GTCTC	3 cut(s)	350, 426, 741
BsmFI	GGGAC	2 cut(s)	144, 229
BsnI	GGCC	1 cut(s)	202
BsoBI	CYCGRG	3 cut(s)	542, 744, 754
Bsp143I	GATC	5 cut(s)	10, 231, 301, 313, 697
BspACI	CCGC	1 cut(s)	100
BspANI	GGCC	1 cut(s)	202
BspCNI	CTCAG	1 cut(s)	346
BspLI	GGNNCC	1 cut(s)	160
BspPI	GGATC	1 cut(s)	308
BsrDI	GCAATG	1 cut(s)	671
BsrI	ACTGG	1 cut(s)	203
BssECI	CCNNGG	3 cut(s)	541, 754, 763
BssMI	GATC	5 cut(s)	10, 231, 301, 313, 697
BssT1I	CCWWGG	1 cut(s)	763
Bst4CI	ACNGT	2 cut(s)	251, 274
BstBAI	YACGTR	1 cut(s)	341
BstDEI	CTNAG	3 cut(s)	204, 354, 428
BstF5I	GGATG	5 cut(s)	391, 655, 700, 764, 850
BstKTI	GATC	5 cut(s)	13, 234, 304, 316, 700
BstMAI	GTCTC	3 cut(s)	350, 426, 741
BstMBI	GATC	5 cut(s)	10, 231, 301, 313, 697
BstSCI	CCNGG	2 cut(s)	753, 754
BstV1I	GCAGC	4 cut(s)	145, 148, 537, 713
BstV2I	GAAGAC	1 cut(s)	726
BstX2I	RGATCY	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	313
BsuI	GTATCC	1 cut(s)	189
BsuRI	GGCC	1 cut(s)	202
BtsCI	GGATG	5 cut(s)	391, 655, 700, 764, 850
Cfr13I	GGNCC	2 cut(s)	102, 158
Cfr9I	CCCGGG	1 cut(s)	754
Csp6I	GTAC	2 cut(s)	258, 306
CviAII	CATG	4 cut(s)	96, 239, 261, 569
CviJI	RGCY	7 cut(s)	5, 139, 202, 419, 446, 467, 550
CviKI_1	RGCY	7 cut(s)	5, 139, 202, 419, 446, 467, 550
CviQI	GTAC	2 cut(s)	258, 306
DdeI	CTNAG	3 cut(s)	204, 354, 428
DpnI	GATC	5 cut(s)	12, 233, 303, 315, 699
DpnII	GATC	5 cut(s)	10, 231, 301, 313, 697
Eco130I	CCWWGG	1 cut(s)	763
Eco47I	GGWCC	2 cut(s)	102, 158
Eco72I	CACGTG	1 cut(s)	341
Eco88I	CYCGRG	3 cut(s)	542, 744, 754
EcoO109I	RGGNCCY	1 cut(s)	158
EcoT14I	CCWWGG	1 cut(s)	763
ErhI	CCWWGG	1 cut(s)	763
FaeI	CATG	4 cut(s)	99, 242, 264, 572
FalI	AAGNNNNNCTT	2 cut(s)	512, 544
FaqI	GGGAC	2 cut(s)	144, 229
FatI	CATG	4 cut(s)	95, 238, 260, 568
Fnu4HI	GCNGC	4 cut(s)	134, 137, 551, 727
FokI	GGATG	5 cut(s)	398, 662, 707, 771, 857
Fsp4HI	GCNGC	4 cut(s)	134, 137, 551, 727
FspBI	CTAG	4 cut(s)	311, 483, 819, 865
GluI	GCNGC	4 cut(s)	134, 137, 551, 727
HaeIII	GGCC	1 cut(s)	202
HapII	CCGG	1 cut(s)	755
Hin1II	CATG	4 cut(s)	99, 242, 264, 572
HindIII	AAGCTT	1 cut(s)	417
HinfI	GANTC	3 cut(s)	75, 287, 536
HpaII	CCGG	1 cut(s)	755
HphI	GGTGA	4 cut(s)	20, 211, 241, 305
Hpy166II	GTNNAC	1 cut(s)	640
Hpy188I	TCNGA	3 cut(s)	155, 660, 688
Hpy188III	TCNNGA	4 cut(s)	72, 182, 616, 746
Hpy8I	GTNNAC	1 cut(s)	640
HpyAV	CCTTC	3 cut(s)	484, 505, 673
HpyCH4III	ACNGT	2 cut(s)	251, 274
HpyCH4IV	ACGT	1 cut(s)	340
HpyCH4V	TGCA	2 cut(s)	587, 774
HpyF3I	CTNAG	3 cut(s)	204, 354, 428
HpySE526I	ACGT	1 cut(s)	340
Hsp92II	CATG	4 cut(s)	99, 242, 264, 572
Kzo9I	GATC	5 cut(s)	10, 231, 301, 313, 697
LmnI	GCTCC	2 cut(s)	144, 547
LpnPI	CCDG	7 cut(s)	184, 195, 366, 378, 383, 432, 768
Lsp1109I	GCAGC	4 cut(s)	145, 148, 537, 713
LweI	GCATC	1 cut(s)	749
MaeI	CTAG	4 cut(s)	311, 483, 819, 865
MaeII	ACGT	1 cut(s)	340
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	5 cut(s)	12, 233, 303, 315, 699
MboI	GATC	5 cut(s)	10, 231, 301, 313, 697
MboII	GAAGA	7 cut(s)	401, 520, 529, 532, 535, 617, 731
MflI	RGATCY	1 cut(s)	313
MluCI	AATT	5 cut(s)	23, 297, 407, 769, 825
MmeI	TCCRAC	3 cut(s)	19, 363, 627
MroXI	GAANNNNTTC	1 cut(s)	393
MseI	TTAA	1 cut(s)	51
MslI	CAYNNNNRTG	1 cut(s)	843
MspI	CCGG	1 cut(s)	755
MspR9I	CCNGG	2 cut(s)	755, 756
NciI	CCSGG	2 cut(s)	755, 756
NdeII	GATC	5 cut(s)	10, 231, 301, 313, 697
NlaIII	CATG	4 cut(s)	99, 242, 264, 572
NlaIV	GGNNCC	1 cut(s)	160
PaeR7I	CTCGAG	1 cut(s)	744
PdmI	GAANNNNTTC	1 cut(s)	393
PfeI	GAWTC	3 cut(s)	75, 287, 536
Pfl23II	CGTACG	1 cut(s)	305
PkrI	GCNGC	4 cut(s)	135, 138, 552, 728
PmaCI	CACGTG	1 cut(s)	341
PmlI	CACGTG	1 cut(s)	341
Ppu21I	YACGTR	1 cut(s)	341
PpuMI	RGGWCCY	1 cut(s)	158
Psp5II	RGGWCCY	1 cut(s)	158
PspCI	CACGTG	1 cut(s)	341
PspLI	CGTACG	1 cut(s)	305
PspN4I	GGNNCC	1 cut(s)	160
PspPI	GGNCC	2 cut(s)	102, 158
PspPPI	RGGWCCY	1 cut(s)	158
PsuI	RGATCY	1 cut(s)	313
RsaI	GTAC	2 cut(s)	259, 307
RsaNI	GTAC	2 cut(s)	258, 306
RseI	CAYNNNNRTG	1 cut(s)	843
SaqAI	TTAA	1 cut(s)	51
SatI	GCNGC	4 cut(s)	134, 137, 551, 727
Sau3AI	GATC	5 cut(s)	10, 231, 301, 313, 697
Sau96I	GGNCC	2 cut(s)	102, 158
ScrFI	CCNGG	2 cut(s)	755, 756
SetI	ASST	7 cut(s)	141, 160, 219, 343, 421, 552, 639
SfaNI	GCATC	1 cut(s)	749
Sfr274I	CTCGAG	1 cut(s)	744
SinI	GGWCC	2 cut(s)	102, 158
SlaI	CTCGAG	1 cut(s)	744
SmaI	CCCGGG	1 cut(s)	756
SmiMI	CAYNNNNRTG	1 cut(s)	843
SmlI	CTYRAG	2 cut(s)	614, 744
SmoI	CTYRAG	2 cut(s)	614, 744
Sse9I	AATT	5 cut(s)	23, 297, 407, 769, 825
SsiI	CCGC	1 cut(s)	100
SspI	AATATT	1 cut(s)	705
SspMI	CTAG	4 cut(s)	311, 483, 819, 865
StyD4I	CCNGG	2 cut(s)	753, 754
StyI	CCWWGG	1 cut(s)	763
TaaI	ACNGT	2 cut(s)	251, 274
TaiI	ACGT	1 cut(s)	343
TaqI	TCGA	5 cut(s)	73, 534, 561, 700, 745
TaqII	GACCGA	1 cut(s)	81
TasI	AATT	5 cut(s)	23, 297, 407, 769, 825
TatI	WGTACW	1 cut(s)	257
TfiI	GAWTC	3 cut(s)	75, 287, 536
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TseI	GCWGC	4 cut(s)	133, 136, 550, 726
TspDTI	ATGAA	4 cut(s)	402, 636, 692, 804
TspGWI	ACGGA	1 cut(s)	68
TspMI	CCCGGG	1 cut(s)	754
VpaK11BI	GGWCC	2 cut(s)	102, 158
XcmI	CCANNNNNNNNNTGG	1 cut(s)	845
XhoI	CTCGAG	1 cut(s)	744
XmaI	CCCGGG	1 cut(s)	754
XmnI	GAANNNNTTC	1 cut(s)	393
XspI	CTAG	4 cut(s)	311, 483, 819, 865

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.