Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001150

Physical Location & Seq

Genomic Coordinates Forward (+)

5491364 .. 5494028

Gene Structure 2665 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0070300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGCTGTCTTACACAGCTGCGCGCCTTTTCTGCAAAGTCCGAGCATTCCCTTATCCTTGTTTTGCCGCCAGAAACACTGCTCGCCACCGTTTTGGGCCGTCGGAGGTCCATTTCGGAGCTGTTATGGTCAGCCCAAGACGAGTGTATTGGTGGCTAAAGCGGGTCGGGGTCTAAAGTTGGGGACCCAGAAAGAGAGTGGAGGAGAAGATGGAGGCTTTGGTGATGAAGAGGAGGATGAAGGTGAAGATGGGTTTTCGGGTCGGAGTGGGTTTGTGGGGAGAGGAGAAGGGAAGGAGTTTGATCGAGACCCTGAGTTTGCTGAAATAATGGGTGCTTGTCTTGATGACCCACAAAAGGCTAGGTCCAAGATGGAGGAGAGGTTGAGGAAGAAAAGGAACAAGATATTGCATACAAAATCGGGGTTAGGGGAACCCATGAGAGTGGTATTCAATGACTTTGGTTTCTCAAATTCATACATATGGTTCGAGTTCTACAACATTCCATTGGAACAAGATGTTTCCTTAATCTCGGATACTATTCGATCGTGGCACATTATTGGACGCTTGGGTGGATGCAATTCCATGAATATGCAATTGTCACAATCCCCTTTGGATAAACGACCAAGTTATGATCCCATTCAGGGAGCAAATGTGACACCAACTACATTTTACAATATTGGAGATCTTGAGATTCAAGACAACTTGGGACGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0032392 GO:0032446 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

238

Amino Acids

26.41

Weight (kDa)

5.66

Isoelectric Point (pI)

67.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3531	PF12049	146 - 238	5.9e-28	Protein of unknown function (DUF3531)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001150)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10320 FvH4_1g10321 FvH4_1g10850
malus_domestica	MD14G1159500.v1.1 MD15G1237600.v1.1
prunus_persica	Prupe.7G176500_v2.0.a1 Prupe.7G176700_v2.0.a1 Prupe.7G176800_v2.0.a1 Prupe.7G176900_v2.0.a1
pyrus_communis	pycom02g09650 pycom02g09800 pycom14g13320 pycom15g21130
rosa_chinensis	RchiOBHm_Chr2g0097161 RchiOBHm_Chr2g0097171 RchiOBHm_Chr2g0098141 RchiOBHm_Chr2g0099621
rosa_laevigata	RLG00000014898 RLG00000016709 RLG00000016710 RLG00000016759 RLG00000016765 RLG00000016898
rosa_multiflora	Rmu_co8490487.1_g000001 Rmu_sc0001182.1_g000008 Rmu_sc0001182.1_g000009 Rmu_sc0002880.1_g000006 Rmu_sc0005120.1_g000014
rosa_roxburghii	Rroxscaffold_2G00142910 Rroxscaffold_2G00144250 Rroxscaffold_2G00144300 Rroxscaffold_2G00144910 Rroxscaffold_2G00144920
rosa_rugosa	Rorug02G0064900.1 Rorug02G0065400 Rorug02G0070300 Rorug02G0070300 Rorug02G0070400 Rorug02G0081700
rosa_samantha	Rh1CG355800 Rh2AG111900 Rh2AG117600 Rh2AG117900 Rh2BG114000 Rh2BG114100 Rh2BG120500 Rh2BG134300 Rh2CG116200 Rh2CG135200 Rh2DG115200 Rh2DG115300 Rh2DG115400 Rh2DG122200 Rh2DG135700
rosa_wichuraiana	Rw2G008710 Rw2G009180 Rw2G009210 Rw2G010130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	23
AciI	CCGC	2 cut(s)	67, 161
AclWI	GGATC	1 cut(s)	626
AcsI	RAATTY	1 cut(s)	469
AfiI	CCNNNNNNNGG	2 cut(s)	355, 641
AflIII	ACRYGT	1 cut(s)	709
AgsI	TTSAA	2 cut(s)	451, 695
AjiI	CACGTC	1 cut(s)	710
AluBI	AGCT	2 cut(s)	18, 120
AluI	AGCT	2 cut(s)	18, 120
Alw26I	GTCTC	1 cut(s)	300
AlwI	GGATC	1 cut(s)	626
AoxI	GGCC	1 cut(s)	96
ApeKI	GCWGC	1 cut(s)	18
ApoI	RAATTY	1 cut(s)	469
ArsI	GACNNNNNNTTYG	2 cut(s)	299, 331
AspLEI	GCGC	2 cut(s)	23, 25
AspS9I	GGNCC	4 cut(s)	96, 107, 183, 363
AsuHPI	GGTGA	2 cut(s)	233, 254
AvaII	GGWCC	3 cut(s)	107, 183, 363
BbvI	GCAGC	1 cut(s)	5
BccI	CCATC	3 cut(s)	203, 242, 364
BceAI	ACGGC	1 cut(s)	83
BciVI	GTATCC	1 cut(s)	526
BcoDI	GTCTC	1 cut(s)	300
BfaI	CTAG	1 cut(s)	360
BfuI	GTATCC	1 cut(s)	526
BglII	AGATCT	1 cut(s)	682
BisI	GCNGC	2 cut(s)	19, 67
BlsI	GCNGC	2 cut(s)	20, 68
Bme18I	GGWCC	3 cut(s)	107, 183, 363
BmgBI	CACGTC	1 cut(s)	710
BmgT120I	GGNCC	4 cut(s)	96, 107, 183, 363
BmiI	GGNNCC	3 cut(s)	184, 185, 432
BmsI	GCATC	1 cut(s)	563
BpuEI	CTTGAG	1 cut(s)	707
BsaI	GGTCTC	1 cut(s)	300
BsaXI	ACNNNNNCTCC	4 cut(s)	365, 395, 636, 666
Bsc4I	CCNNNNNNNGG	2 cut(s)	355, 641
BseGI	GGATG	2 cut(s)	241, 578
BseLI	CCNNNNNNNGG	2 cut(s)	355, 641
BseMII	CTCAG	1 cut(s)	303
BsePI	GCGCGC	1 cut(s)	21
BseRI	GAGGAG	4 cut(s)	216, 245, 297, 389
BseXI	GCAGC	1 cut(s)	5
Bsh1236I	CGCG	1 cut(s)	23
Bsh1285I	CGRYCG	1 cut(s)	545
BshFI	GGCC	1 cut(s)	98
BsiEI	CGRYCG	1 cut(s)	545
BslFI	GGGAC	1 cut(s)	196
BslI	CCNNNNNNNGG	2 cut(s)	355, 641
BsmAI	GTCTC	1 cut(s)	300
BsmFI	GGGAC	1 cut(s)	196
BsmI	GAATGC	1 cut(s)	45
BsnI	GGCC	1 cut(s)	98
Bso31I	GGTCTC	1 cut(s)	300
Bsp143I	GATC	4 cut(s)	301, 542, 631, 682
BspACI	CCGC	2 cut(s)	67, 161
BspANI	GGCC	1 cut(s)	98
BspCNI	CTCAG	1 cut(s)	304
BspFNI	CGCG	1 cut(s)	23
BspLI	GGNNCC	3 cut(s)	184, 185, 432
BspPI	GGATC	1 cut(s)	626
BspTNI	GGTCTC	1 cut(s)	300
BssHII	GCGCGC	1 cut(s)	21
BssMI	GATC	4 cut(s)	301, 542, 631, 682
Bst4CI	ACNGT	1 cut(s)	90
Bst6I	CTCTTC	1 cut(s)	222
BstC8I	GCNNGC	2 cut(s)	23, 83
BstDEI	CTNAG	1 cut(s)	312
BstF5I	GGATG	2 cut(s)	241, 578
BstFNI	CGCG	1 cut(s)	23
BstHHI	GCGC	2 cut(s)	23, 25
BstKTI	GATC	4 cut(s)	304, 545, 634, 685
BstMAI	GTCTC	1 cut(s)	300
BstMBI	GATC	4 cut(s)	301, 542, 631, 682
BstMCI	CGRYCG	1 cut(s)	545
BstMWI	GCNNNNNNNGC	1 cut(s)	31
BstUI	CGCG	1 cut(s)	23
BstV1I	GCAGC	1 cut(s)	5
BstX2I	RGATCY	1 cut(s)	682
BstXI	CCANNNNNNTGG	2 cut(s)	93, 442
BstYI	RGATCY	1 cut(s)	682
BsuI	GTATCC	1 cut(s)	526
BsuRI	GGCC	1 cut(s)	98
BtrI	CACGTC	1 cut(s)	710
BtsCI	GGATG	2 cut(s)	241, 578
BtsI	GCAGTG	1 cut(s)	76
BtsIMutI	CAGTG	1 cut(s)	76
Cac8I	GCNNGC	2 cut(s)	23, 83
CfoI	GCGC	2 cut(s)	23, 25
Cfr13I	GGNCC	4 cut(s)	96, 107, 183, 363
CseI	GACGC	1 cut(s)	570
CviAII	CATG	2 cut(s)	436, 583
CviJI	RGCY	8 cut(s)	5, 18, 98, 120, 133, 155, 216, 359
CviKI_1	RGCY	8 cut(s)	5, 18, 98, 120, 133, 155, 216, 359
DdeI	CTNAG	1 cut(s)	312
DpnI	GATC	4 cut(s)	303, 544, 633, 684
DpnII	GATC	4 cut(s)	301, 542, 631, 682
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
Eco31I	GGTCTC	1 cut(s)	300
Eco47I	GGWCC	3 cut(s)	107, 183, 363
EcoO109I	RGGNCCY	1 cut(s)	183
FaeI	CATG	2 cut(s)	439, 586
FaiI	YATR	9 cut(s)	126, 411, 437, 475, 479, 481, 584, 590, 630
FaqI	GGGAC	1 cut(s)	196
FatI	CATG	2 cut(s)	435, 582
FauI	CCCGC	1 cut(s)	154
FauNDI	CATATG	1 cut(s)	479
Fnu4HI	GCNGC	2 cut(s)	19, 67
FokI	GGATG	2 cut(s)	248, 585
Fsp4HI	GCNGC	2 cut(s)	19, 67
FspBI	CTAG	1 cut(s)	360
GlaI	GCGC	2 cut(s)	22, 24
GluI	GCNGC	2 cut(s)	19, 67
HaeIII	GGCC	1 cut(s)	98
HgaI	GACGC	1 cut(s)	570
HhaI	GCGC	2 cut(s)	23, 25
Hin1II	CATG	2 cut(s)	439, 586
Hin6I	GCGC	2 cut(s)	21, 23
HinP1I	GCGC	2 cut(s)	21, 23
HinfI	GANTC	1 cut(s)	691
HphI	GGTGA	2 cut(s)	233, 254
Hpy188I	TCNGA	5 cut(s)	42, 104, 117, 264, 532
Hpy188III	TCNNGA	4 cut(s)	305, 341, 686, 695
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	3 cut(s)	233, 281, 286
HpyCH4III	ACNGT	1 cut(s)	90
HpyCH4IV	ACGT	1 cut(s)	709
HpyCH4V	TGCA	4 cut(s)	34, 409, 576, 592
HpyF10VI	GCNNNNNNNGC	1 cut(s)	31
HpyF3I	CTNAG	1 cut(s)	312
HpySE526I	ACGT	1 cut(s)	709
Hsp92II	CATG	2 cut(s)	439, 586
HspAI	GCGC	2 cut(s)	21, 23
KflI	GGGWCCC	1 cut(s)	183
Kzo9I	GATC	4 cut(s)	301, 542, 631, 682
LmnI	GCTCC	2 cut(s)	117, 644
LpnPI	CCDG	4 cut(s)	83, 200, 324, 626
Lsp1109I	GCAGC	1 cut(s)	5
LweI	GCATC	1 cut(s)	563
MaeI	CTAG	1 cut(s)	360
MaeII	ACGT	1 cut(s)	709
MaeIII	GTNAC	2 cut(s)	597, 652
MalI	GATC	4 cut(s)	303, 544, 633, 684
MboI	GATC	4 cut(s)	301, 542, 631, 682
MboII	GAAGA	4 cut(s)	218, 239, 257, 400
MfeI	CAATTG	1 cut(s)	593
MflI	RGATCY	1 cut(s)	682
MluCI	AATT	3 cut(s)	469, 577, 593
MmeI	TCCRAC	2 cut(s)	82, 242
MnlI	CCTC	9 cut(s)	98, 194, 206, 223, 226, 275, 367, 372, 378
MseI	TTAA	1 cut(s)	524
MslI	CAYNNNNRTG	3 cut(s)	440, 478, 587
MspA1I	CMGCKG	1 cut(s)	18
MunI	CAATTG	1 cut(s)	593
Mva1269I	GAATGC	1 cut(s)	45
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	1 cut(s)	31
NdeI	CATATG	1 cut(s)	479
NdeII	GATC	4 cut(s)	301, 542, 631, 682
NlaIII	CATG	2 cut(s)	439, 586
NlaIV	GGNNCC	3 cut(s)	184, 185, 432
NmuCI	GTSAC	2 cut(s)	597, 652
PauI	GCGCGC	1 cut(s)	21
PctI	GAATGC	1 cut(s)	45
PfeI	GAWTC	1 cut(s)	691
PkrI	GCNGC	2 cut(s)	20, 68
Ple19I	CGATCG	1 cut(s)	545
PpuMI	RGGWCCY	1 cut(s)	183
Psp5II	RGGWCCY	1 cut(s)	183
PspN4I	GGNNCC	3 cut(s)	184, 185, 432
PspPI	GGNCC	4 cut(s)	96, 107, 183, 363
PspPPI	RGGWCCY	1 cut(s)	183
PsuI	RGATCY	1 cut(s)	682
PteI	GCGCGC	1 cut(s)	21
PvuI	CGATCG	1 cut(s)	545
PvuII	CAGCTG	1 cut(s)	18
RseI	CAYNNNNRTG	3 cut(s)	440, 478, 587
SaqAI	TTAA	1 cut(s)	524
SatI	GCNGC	2 cut(s)	19, 67
Sau3AI	GATC	4 cut(s)	301, 542, 631, 682
Sau96I	GGNCC	4 cut(s)	96, 107, 183, 363
SetI	ASST	7 cut(s)	20, 109, 122, 244, 365, 383, 712
SfaNI	GCATC	1 cut(s)	563
SinI	GGWCC	3 cut(s)	107, 183, 363
SmiMI	CAYNNNNRTG	3 cut(s)	440, 478, 587
SmlI	CTYRAG	1 cut(s)	686
SmoI	CTYRAG	1 cut(s)	686
Sse9I	AATT	3 cut(s)	469, 577, 593
SsiI	CCGC	2 cut(s)	67, 161
SspI	AATATT	1 cut(s)	676
SspMI	CTAG	1 cut(s)	360
TaaI	ACNGT	1 cut(s)	90
TaiI	ACGT	1 cut(s)	712
TaqI	TCGA	3 cut(s)	304, 486, 541
TasI	AATT	3 cut(s)	469, 577, 593
TauI	GCSGC	1 cut(s)	69
TfiI	GAWTC	1 cut(s)	691
Tru1I	TTAA	1 cut(s)	524
Tru9I	TTAA	1 cut(s)	524
TscAI	CASTG	1 cut(s)	83
TseFI	GTSAC	2 cut(s)	597, 652
TseI	GCWGC	1 cut(s)	18
Tsp45I	GTSAC	2 cut(s)	597, 652
TspDTI	ATGAA	4 cut(s)	240, 252, 462, 599
TspRI	CASTG	1 cut(s)	83
VpaK11BI	GGWCC	3 cut(s)	107, 183, 363
XapI	RAATTY	1 cut(s)	469
XcmI	CCANNNNNNNNNTGG	1 cut(s)	194
XspI	CTAG	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.