pycom15g21130

f-box protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
15128476 .. 15129687
1212 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g21130.1

Sequence Viewer

Length: 1212 bp
ATGAGCAAAAACCCTAGACTCCAAGTACCCTGTTCCTCTGAAAACACCACGACGTACAATACAGACAGACTTGACATGGCGAGTGGTGCAGATAATATCCCACGCGAACTGTTAGCGAACATCGGAAACCGCCTCAACACTAAAACCGATGTTTCTAGATTCCGTGCGGTCTGTAAGTCATGGCGGTCCTCTATTCCTCCCTTCAAGAACCTGCTCCAGTTACCCTCAGAAGCGTGGTTTGCAGTCGGAGAGGATGGCATAGATAGTTATTGCGTAGGCTTTACCCTCGTCGAGAGCGCAGTCTATCATATCGCACCTCCCGCGGATGATGGTCCCCGGAAAAGAGGTTGGTTGATTAACGTCAAAGAAGTAGGTACTGATCAGTTGAGTGAACAACCAACTCATCGCATGTTGCATCCACTCTCCCGCTTATTTGGAGGGCAGCCCAAGTCCTTGCCAAAGGTATTCAACTTATTGGAATTTAGGGTTTTTGAAGTGGCAAAAATGTATAGTCTAGTGTACGATCATGAGATGCCTGATGATCATTTGAAGGTGGCCGTATCCTTGAATCTCGATTTCCCTGCTGTCGTGGCGATTGATCCATTCGGAACGTTATATTACGGAGAGCTAGGTGGTGATGTCGTAGAGTGCATCAACTTCCCTTTGAAGTTGGACGACGTGTACCCTGGTTTTCAAGATGTTATTTTTTACAAAGGAAGGTTTTGTGCTGTGTGTCGTGATGGGAGAGCTGTAGGGGTTGATTCTTGTCTGAATACGGAACTGATTGCTTCTCCATTAGCGAATAGCTCTTGCCGTGACGACAAGAGGAAGAAGAAGTTGGTGGAGTCGTTGGGAGAGCTGCTTTTAGTCGATATGTATTTGTATGGCAAGCCGTCGGACTTTACATTCGAGATTTTTAAGCTGGACGCTCACAAGAAGCAGTGGGTTAAGTTTGAGGCTCAGGCTTTGGATGATCGAATATTGGTTCTCGGAGATGACGGCTGCTACTCCCTTTCTGCTCGAGATTTCCCGGGAGTCGAGGGGAGATGTATTTATTTCAAAGAGGCTCTTCATTACAGGAGTTACAAGTGCAATGAGTTGGAAAACATGTCCAGAGAAATTGCAGTGTACAGCTTGGATTCAGGCCGTGTCTCGCAGATAACTGATTTTCCAAGTTTGAACATATTTTGTCCACCCACAACCTGGAGATAG

Protein Analysis

404

Amino Acids

45.5

Weight (kDa)

5.63

Isoelectric Point (pI)

42.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 113 - 377 3.7e-25 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 219
AccB7I CCANNNNNTGG 1 cut(s) 1203
AccII CGCG 2 cut(s) 105, 323
AciI CCGC 6 cut(s) 130, 167, 184, 321, 323, 427
AclI AACGTT 1 cut(s) 611
AclWI GGATC 1 cut(s) 593
AcoI YGGCCR 1 cut(s) 555
AcsI RAATTY 1 cut(s) 479
AfaI GTAC 6 cut(s) 27, 56, 376, 521, 683, 1130
AfiI CCNNNNNNNGG 1 cut(s) 1203
AflIII ACRYGT 2 cut(s) 678, 1107
AgsI TTSAA 9 cut(s) 205, 469, 494, 550, 568, 667, 695, 1060, 1180
AjiI CACGTC 1 cut(s) 679
AjnI CCWGG 2 cut(s) 685, 1202
AjuI GAANNNNNNNTTGG 2 cut(s) 821, 853
AluBI AGCT 6 cut(s) 628, 749, 807, 859, 922, 1134
AluI AGCT 6 cut(s) 628, 749, 807, 859, 922, 1134
Alw26I GTCTC 1 cut(s) 1156
AlwI GGATC 1 cut(s) 593
Ama87I CYCGRG 2 cut(s) 1020, 1030
AoxI GGCC 2 cut(s) 555, 1144
ApeKI GCWGC 3 cut(s) 442, 859, 1002
ApoI RAATTY 1 cut(s) 479
ArsI GACNNNNNNTTYG 2 cut(s) 890, 922
AspLEI GCGC 1 cut(s) 299
AspS9I GGNCC 2 cut(s) 186, 332
AsuC2I CCSGG 3 cut(s) 337, 1031, 1032
AsuHPI GGTGA 1 cut(s) 647
AvaI CYCGRG 2 cut(s) 1020, 1030
AvaII GGWCC 2 cut(s) 186, 332
BbvI GCAGC 3 cut(s) 454, 846, 989
BccI CCATC 3 cut(s) 248, 323, 734
BceAI ACGGC 5 cut(s) 542, 798, 877, 1015, 1131
BcgI CGANNNNNNTGC 2 cut(s) 563, 597
BciT130I CCWGG 2 cut(s) 687, 1204
BciVI GTATCC 1 cut(s) 571
BclI TGATCA 2 cut(s) 379, 541
BcnI CCSGG 3 cut(s) 337, 1031, 1032
BcoDI GTCTC 1 cut(s) 1156
BfaI CTAG 4 cut(s) 15, 156, 515, 629
BfmI CTRYAG 1 cut(s) 750
BfuAI ACCTGC 1 cut(s) 219
BfuI GTATCC 1 cut(s) 571
BisI GCNGC 3 cut(s) 443, 860, 1003
BlsI GCNGC 3 cut(s) 444, 861, 1004
Bme1390I CCNGG 5 cut(s) 337, 687, 1031, 1032, 1204
Bme18I GGWCC 2 cut(s) 186, 332
BmeT110I CYCGRG 2 cut(s) 1020, 1030
BmgBI CACGTC 1 cut(s) 679
BmgT120I GGNCC 2 cut(s) 186, 332
BmiI GGNNCC 1 cut(s) 334
BmrFI CCNGG 5 cut(s) 337, 687, 1031, 1032, 1204
BmsI GCATC 3 cut(s) 424, 522, 660
BpmI CTGGAG 1 cut(s) 200
Bpu10I CCTNAGC 1 cut(s) 960
BpuMI CCSGG 3 cut(s) 337, 1031, 1032
BsaJI CCNNGG 4 cut(s) 321, 335, 685, 1030
Bsc4I CCNNNNNNNGG 1 cut(s) 1203
Bse1I ACTGG 1 cut(s) 217
Bse3DI GCAATG 1 cut(s) 1099
BseBI CCWGG 2 cut(s) 687, 1204
BseDI CCNNGG 4 cut(s) 321, 335, 685, 1030
BseGI GGATG 4 cut(s) 259, 331, 415, 976
BseLI CCNNNNNNNGG 1 cut(s) 1203
BseMI GCAATG 1 cut(s) 1099
BseMII CTCAG 2 cut(s) 240, 974
BseNI ACTGG 1 cut(s) 217
BseXI GCAGC 3 cut(s) 454, 846, 989
BsgI GTGCAG 1 cut(s) 108
Bsh1236I CGCG 2 cut(s) 105, 323
BshFI GGCC 2 cut(s) 557, 1146
BsiHKCI CYCGRG 2 cut(s) 1020, 1030
BsiSI CCGG 2 cut(s) 337, 1031
BslFI GGGAC 1 cut(s) 318
BslI CCNNNNNNNGG 1 cut(s) 1203
BsmAI GTCTC 1 cut(s) 1156
BsmFI GGGAC 1 cut(s) 318
BsnI GGCC 2 cut(s) 557, 1146
BsoBI CYCGRG 2 cut(s) 1020, 1030
Bsp1407I TGTACA 1 cut(s) 1128
Bsp143I GATC 5 cut(s) 379, 523, 541, 598, 973
BspACI CCGC 6 cut(s) 130, 167, 184, 321, 323, 427
BspANI GGCC 2 cut(s) 557, 1146
BspCNI CTCAG 2 cut(s) 239, 973
BspFNI CGCG 2 cut(s) 105, 323
BspHI TCATGA 1 cut(s) 526
BspLI GGNNCC 1 cut(s) 334
BspMI ACCTGC 1 cut(s) 219
BspPI GGATC 1 cut(s) 593
BspQI GCTCTTC 1 cut(s) 1074
BsrDI GCAATG 1 cut(s) 1099
BsrGI TGTACA 1 cut(s) 1128
BsrI ACTGG 1 cut(s) 217
BssECI CCNNGG 4 cut(s) 321, 335, 685, 1030
BssMI GATC 5 cut(s) 379, 523, 541, 598, 973
Bst2UI CCWGG 2 cut(s) 687, 1204
Bst4CI ACNGT 1 cut(s) 111
Bst6I CTCTTC 1 cut(s) 1074
BstAUI TGTACA 1 cut(s) 1128
BstC8I GCNNGC 1 cut(s) 890
BstDEI CTNAG 2 cut(s) 226, 960
BstDSI CCRYGG 1 cut(s) 321
BstF5I GGATG 4 cut(s) 259, 331, 415, 976
BstFNI CGCG 2 cut(s) 105, 323
BstHHI GCGC 1 cut(s) 299
BstKTI GATC 5 cut(s) 382, 526, 544, 601, 976
BstMAI GTCTC 1 cut(s) 1156
BstMBI GATC 5 cut(s) 379, 523, 541, 598, 973
BstMWI GCNNNNNNNGC 4 cut(s) 86, 239, 320, 590
BstNI CCWGG 2 cut(s) 687, 1204
BstNSI RCATGY 2 cut(s) 412, 1111
BstSCI CCNGG 5 cut(s) 335, 685, 1029, 1030, 1202
BstSFI CTRYAG 1 cut(s) 750
BstUI CGCG 2 cut(s) 105, 323
BstV1I GCAGC 3 cut(s) 454, 846, 989
BsuI GTATCC 1 cut(s) 571
BsuRI GGCC 2 cut(s) 557, 1146
BtgI CCRYGG 1 cut(s) 321
BtgZI GCGATG 1 cut(s) 389
BtrI CACGTC 1 cut(s) 679
BtsCI GGATG 4 cut(s) 259, 331, 415, 976
BtsI GCAGTG 2 cut(s) 947, 1131
BtsIMutI CAGTG 2 cut(s) 947, 1131
BveI ACCTGC 1 cut(s) 219
Cac8I GCNNGC 1 cut(s) 890
CciI TCATGA 1 cut(s) 526
CfoI GCGC 1 cut(s) 299
Cfr13I GGNCC 2 cut(s) 186, 332
Cfr42I CCGCGG 1 cut(s) 324
Cfr9I CCCGGG 1 cut(s) 1030
CseI GACGC 1 cut(s) 935
Csp6I GTAC 6 cut(s) 26, 55, 375, 520, 682, 1129
CviAII CATG 5 cut(s) 76, 180, 409, 527, 1108
CviQI GTAC 6 cut(s) 26, 55, 375, 520, 682, 1129
DdeI CTNAG 2 cut(s) 226, 960
DpnI GATC 5 cut(s) 381, 525, 543, 600, 975
DpnII GATC 5 cut(s) 379, 523, 541, 598, 973
EaeI YGGCCR 1 cut(s) 555
Eam1104I CTCTTC 1 cut(s) 1074
EarI CTCTTC 1 cut(s) 1074
Eco47I GGWCC 2 cut(s) 186, 332
Eco88I CYCGRG 2 cut(s) 1020, 1030
EcoRII CCWGG 2 cut(s) 685, 1202
FaeI CATG 5 cut(s) 79, 183, 412, 530, 1111
FalI AAGNNNNNCTT 2 cut(s) 1053, 1085
FaqI GGGAC 1 cut(s) 318
FatI CATG 5 cut(s) 75, 179, 408, 526, 1107
FauI CCCGC 2 cut(s) 328, 434
FbaI TGATCA 2 cut(s) 379, 541
Fnu4HI GCNGC 3 cut(s) 443, 860, 1003
FokI GGATG 4 cut(s) 266, 338, 402, 983
Fsp4HI GCNGC 3 cut(s) 443, 860, 1003
FspBI CTAG 4 cut(s) 15, 156, 515, 629
GlaI GCGC 1 cut(s) 298
GluI GCNGC 3 cut(s) 443, 860, 1003
GsuI CTGGAG 1 cut(s) 200
HaeIII GGCC 2 cut(s) 557, 1146
HapII CCGG 2 cut(s) 337, 1031
HgaI GACGC 1 cut(s) 935
HhaI GCGC 1 cut(s) 299
Hin1II CATG 5 cut(s) 79, 183, 412, 530, 1111
Hin6I GCGC 1 cut(s) 297
HinP1I GCGC 1 cut(s) 297
HinfI GANTC 7 cut(s) 18, 159, 568, 761, 845, 1035, 1139
HpaII CCGG 2 cut(s) 337, 1031
HphI GGTGA 1 cut(s) 647
Hpy166II GTNNAC 5 cut(s) 392, 520, 682, 1129, 1193
Hpy188I TCNGA 8 cut(s) 40, 125, 229, 248, 608, 771, 898, 992
Hpy8I GTNNAC 5 cut(s) 392, 520, 682, 1129, 1193
Hpy99I CGWCG 4 cut(s) 55, 293, 680, 898
HpyAV CCTTC 3 cut(s) 211, 544, 711
HpyCH4III ACNGT 1 cut(s) 111
HpyCH4IV ACGT 4 cut(s) 53, 360, 611, 678
HpyCH4V TGCA 6 cut(s) 89, 242, 415, 651, 1092, 1124
HpyF10VI GCNNNNNNNGC 4 cut(s) 86, 239, 320, 590
HpyF3I CTNAG 2 cut(s) 226, 960
HpySE526I ACGT 4 cut(s) 53, 360, 611, 678
Hsp92II CATG 5 cut(s) 79, 183, 412, 530, 1111
HspAI GCGC 1 cut(s) 297
Ksp22I TGATCA 2 cut(s) 379, 541
KspI CCGCGG 1 cut(s) 324
Kzo9I GATC 5 cut(s) 379, 523, 541, 598, 973
LguI GCTCTTC 1 cut(s) 1074
LmnI GCTCC 1 cut(s) 219
Lsp1109I GCAGC 3 cut(s) 454, 846, 989
LweI GCATC 3 cut(s) 424, 522, 660
MaeI CTAG 4 cut(s) 15, 156, 515, 629
MaeII ACGT 4 cut(s) 53, 360, 611, 678
MaeIII GTNAC 3 cut(s) 219, 815, 1082
MalI GATC 5 cut(s) 381, 525, 543, 600, 975
MboI GATC 5 cut(s) 379, 523, 541, 598, 973
MboII GAAGA 3 cut(s) 841, 844, 1061
MluCI AATT 2 cut(s) 479, 1119
MlyI GAGTC 3 cut(s) 12, 854, 1044
MmeI TCCRAC 4 cut(s) 226, 651, 876, 1080
MseI TTAA 3 cut(s) 357, 918, 948
MspA1I CMGCKG 1 cut(s) 323
MspI CCGG 2 cut(s) 337, 1031
MspR9I CCNGG 5 cut(s) 337, 687, 1031, 1032, 1204
MvaI CCWGG 2 cut(s) 687, 1204
MvnI CGCG 2 cut(s) 105, 323
MwoI GCNNNNNNNGC 4 cut(s) 86, 239, 320, 590
NciI CCSGG 3 cut(s) 337, 1031, 1032
NdeII GATC 5 cut(s) 379, 523, 541, 598, 973
NlaIII CATG 5 cut(s) 79, 183, 412, 530, 1111
NlaIV GGNNCC 1 cut(s) 334
NmuCI GTSAC 1 cut(s) 815
NspI RCATGY 2 cut(s) 412, 1111
PaeR7I CTCGAG 1 cut(s) 1020
PagI TCATGA 1 cut(s) 526
PciI ACATGT 1 cut(s) 1107
PciSI GCTCTTC 1 cut(s) 1074
PfeI GAWTC 4 cut(s) 159, 568, 761, 1139
PflMI CCANNNNNTGG 1 cut(s) 1203
PkrI GCNGC 3 cut(s) 444, 861, 1004
PleI GAGTC 3 cut(s) 12, 853, 1043
PpsI GAGTC 3 cut(s) 12, 853, 1043
PscI ACATGT 1 cut(s) 1107
Psp1406I AACGTT 1 cut(s) 611
Psp6I CCWGG 2 cut(s) 685, 1202
PspGI CCWGG 2 cut(s) 685, 1202
PspN4I GGNNCC 1 cut(s) 334
PspPI GGNCC 2 cut(s) 186, 332
RsaI GTAC 6 cut(s) 27, 56, 376, 521, 683, 1130
RsaNI GTAC 6 cut(s) 26, 55, 375, 520, 682, 1129
SacII CCGCGG 1 cut(s) 324
SapI GCTCTTC 1 cut(s) 1074
SaqAI TTAA 3 cut(s) 357, 918, 948
SatI GCNGC 3 cut(s) 443, 860, 1003
Sau3AI GATC 5 cut(s) 379, 523, 541, 598, 973
Sau96I GGNCC 2 cut(s) 186, 332
SchI GAGTC 3 cut(s) 12, 854, 1044
ScrFI CCNGG 5 cut(s) 337, 687, 1031, 1032, 1204
SfaNI GCATC 3 cut(s) 424, 522, 660
SfcI CTRYAG 1 cut(s) 750
Sfr274I CTCGAG 1 cut(s) 1020
Sfr303I CCGCGG 1 cut(s) 324
SgrBI CCGCGG 1 cut(s) 324
SinI GGWCC 2 cut(s) 186, 332
SlaI CTCGAG 1 cut(s) 1020
SmaI CCCGGG 1 cut(s) 1032
SmlI CTYRAG 1 cut(s) 1020
SmoI CTYRAG 1 cut(s) 1020
Sse9I AATT 2 cut(s) 479, 1119
SsiI CCGC 6 cut(s) 130, 167, 184, 321, 323, 427
SspI AATATT 1 cut(s) 981
SspMI CTAG 4 cut(s) 15, 156, 515, 629
StyD4I CCNGG 5 cut(s) 335, 685, 1029, 1030, 1202
TaaI ACNGT 1 cut(s) 111
TaiI ACGT 4 cut(s) 56, 363, 614, 681
TaqI TCGA 7 cut(s) 291, 573, 870, 909, 976, 1021, 1038
TasI AATT 2 cut(s) 479, 1119
TatI WGTACW 1 cut(s) 1128
TfiI GAWTC 4 cut(s) 159, 568, 761, 1139
Tru1I TTAA 3 cut(s) 357, 918, 948
Tru9I TTAA 3 cut(s) 357, 918, 948
TscAI CASTG 2 cut(s) 947, 1131
TseFI GTSAC 1 cut(s) 815
TseI GCWGC 3 cut(s) 442, 859, 1002
Tsp45I GTSAC 1 cut(s) 815
TspDTI ATGAA 1 cut(s) 1061
TspGWI ACGGA 3 cut(s) 152, 636, 791
TspMI CCCGGG 1 cut(s) 1030
TspRI CASTG 2 cut(s) 947, 1131
Van91I CCANNNNNTGG 1 cut(s) 1203
VpaK11BI GGWCC 2 cut(s) 186, 332
XapI RAATTY 1 cut(s) 479
XbaI TCTAGA 1 cut(s) 155
XceI RCATGY 2 cut(s) 412, 1111
XcmI CCANNNNNNNNNTGG 1 cut(s) 1200
XhoI CTCGAG 1 cut(s) 1020
XmaI CCCGGG 1 cut(s) 1030
XspI CTAG 4 cut(s) 15, 156, 515, 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.